Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2016
Sammendrag
Background: Many wingless ectoparasites have a limited capacity for active movement and are therefore primarily dependent on hitchhiking on their hosts for transportation. The distribution of the tick Ixodes ricinus is expected to depend mainly on transportation by hosts and tick subsequent survival in areas where they drop off. In Europe, the most important hosts of adult female I. ricinus are cervids. The extensive space use of large hosts provides a much larger dispersal potential for I. ricinus than that of smaller mammalian hosts. We aim to determine the contribution of red deer (Cervus elaphus) space use on the spatial distribution of I. ricinus, after accounting for landscape factors. Methods: We analysed the spatial distribution of I. ricinus with generalised mixed effects models (GLMMs) based on data from extensive field surveys of questing density in two coastal regions in Norway, from which home range data from 73 red deer with GPS collars were available. Red deer home ranges were derived using the kernel method to identify areas most frequently used by deer. We first fitted a baseline model with tick questing densities relative to landscape features that are likely to affect local climate conditions and hence, survival. We then added deer space use variables to the baseline model with only landscape variables to test whether areas more frequently used by red deer had higher questing tick densities. Results: Questing I. ricinus density was predicted by several landscape features, such as elevation, distance to the fjord and topographic slope. In addition, we found that areas more heavily used within the red deer home ranges, correlated with higher questing tick densities. Increased effects of deer space use were additive to the landscape model, suggesting that correlations were more than just shared landscape preferences between deer and ticks. Conclusions: Our results imply that the distribution of I. ricinus is controlled by a complex set of factors that include both local conditions related to landscape properties that affect survival and how the large host population redistributes ticks. In particular, we have provided evidence that the local distribution of large hosts, with their extensive space use, redistributes ticks at the local scale.
Sammendrag
Oidium neolycopersici, the cause of powdery mildew in tomato, was exposed to UV radiation from 250 to 400 nm for 1, 12, or 24 min. Radiation ≤ 280 nm strongly reduced conidial germination, hyphal expansion, penetration attempt and infection of O. neolycopersici. From 290 to 310 nm the effect depended on duration of exposure, while there was no effect ≥310 nm. There were no significant differences within the effective UV range (250–280 nm). Conidial germination on a water agar surface was b20% or around 40%, respectively, if samples were exposed for 1 min within the effective UV range followed by 24 h or 48 h incubation. Twelve or 24 min exposure reduced germination to close to nil. A similar trend occurred for germination of conidia on leaf disks on water agar in Petri dishes. The effective UV range significantly reduced all subsequent developmental stages of O. neolycopersici. There was no cytoplasmic mitochondrial streaming in conidia exposed to the effective UV range, indicating that there may be a direct effect via cell cycle arrest. There was no indication of reactive oxygen species involvement in UV mediated inhibition of O. neolycopersici. Optical properties of O. neolycopersici indicat- ed that the relative absorption of UV was high within the range of 250 to 320 nm, and very low within the range of 340 to 400 nm. Identification of UV wavelengths effective against O. neolycopersici provides a future basis for precise disease control.
Sammendrag
Microsatellite markers are one of the most valuable genetic marker because of high polymorphism, codominant, high reproducibility and relatively high abundance in the genome. Classical techniques to identify and to develop microsatellite markers are time-consuming and require cloning and library construction followed by Sanger sequencing. In the recent years Next Generation Sequencing (NGS) have been widely used to identify molecular markers for non-model organisms. To test the efficiency of NGS techniques in developing molecular markers, we have used double digest Restriction site Associated DNA Sequencing (ddRADseq) to identify microsatellites in Heracleum. Genomic DNA from three individuals digested with SbfI and NdeI followed by size selection and library construction and then DNA fragments were sequenced with Ion Torrent PGM. After trimming adaptors and evaluating the quality of reads, QDD software was used to screen reads with microsatellite motives containing two, three, four, five and six nucleotide repeats. Almost 2% of all sequences were consisted microsatellites repeats. Fifty four singleton and consensus sequences were bioanformatically confirmed and were checked for contamination and similarity with NCBI nucleotide database. Seventy percent of the sequences were represented by (AT)n, (AT)n, (GA)n and (AC)n motives. Twenty five primer pairs were selected to test for amplification and the results showed that most of the loci produced the expected size on Agarose gel. Our results show the high efficiency of ddRADseq in developing sufficient number of markers in a short time where the budget is also limited. Keywords: Microsatellites, Next Generation Sequencing, ddRADseq, Heracleum
Forfattere
Ingerd Skow Hofgaard Shiori Koga Heidi Udnes Aamot Ulrike Böcker Erik Lysøe Guro Brodal Ruth Dill-Macky Anne Kjersti UhlenSammendrag
The proportion of Norwegian wheat used for food has recently been dramatically lower due to both reduced production and poor quality. Furthermore, the Norwegian milling and baking industries have experienced major challenges in utilizing Norwegian wheat due to the instability of factors, such as protein content and gluten functionality, that are of major importance for baking quality. The variation in the wheat quality can itself cause economic losses for the milling and baking industry due to uncertainty in the marketplace. In the same period as a large variation in baking quality was reported in Norwegian wheat, serious contamination of Fusarium spp. and mycotoxins were observed in some grain lots. We have revealed the severe degradation of gluten proteins in some Norwegian wheat samples leading to an almost complete loss in the gluten functionality. The degradation of the gluten appears to be caused by exogenous proteases, and was associated with the presence of Fusarium spp., and their metabolites, and other microorganisms in the wheat. Increased knowledge is needed to establish the cause of the poor gluten functionality and to develop control measures to reduce the amount of poor quality wheat entering the food value chain. In 2014, a new project was established to generate deeper knowledge in the interface between gluten functionality and effects of Fusarium spp. and other microorganism on wheat quality, and to better utilize Norwegian wheat grown in this challenging environment. A metagenomic analysis, designed to identify microorganisms associated with reduced baking quality, has been undertaken. To study the influence of the identified microorganisms and their metabolites on gluten functionality, wheat plants were inoculated with microorganisms, selected based upon the results of the metagenomics study. Fusarium species are among those microorganisms being tested.
Sammendrag
Satisfactory seed yield of red clover (Trifolium pratense L.) cultivars is crucial for the availability of seeds on the market. Many breeders and researchers have used seed yield components to measure, compare, and explain differences in seed yield between diploid and tetraploid red clover cultivars and populations; however, the relative importance of each component varies between studies. In 2011 and 2012, single-plant trials with several tetraploid and one diploid red clover cultivar were established at the Norwegian plant breeding station at Bjørke. The goal was to study the impact of different seed-yield components on the seed yield of tetraploid plants. Seed weight per flower head was the seed-yield component that correlated best with the seed yield plant−1 (r = 0.91 and r = 0.68 in 2011 and 2012, respectively). Path coefficient analysis has also shown that the seed weight per flower head had the highest direct impact on seed yield plant−1 (direct path coefficients were 0.867 and 0.783 in 2011 and 2012, respectively). In comparison, the direct path coefficients for calculated number of flower heads, which was previously highlighted as the most important seed-yield component, were lower and more variable (0.739 and 0.392 in 2011 and 2012, respectively). Since previously seed yield per flower head was also identified as the most important seed-yield component in dense plant canopy, this component might have the potential to select for improved seed yield of new cultivars based on single plants. However, further studies are required to confirm this conclusion.
Forfattere
Rolf Nestby Ilian Badjakov I. Dincheva V. Kindakova R. BatchvarovaSammendrag
In this study we present Our initial results on the assessment of Genetic diversity among Wild Bulgarian berry accessions (Rubus idaeus L. Fragaria vesca L. Vaccinium vitis-Idaea L. Vaccinium myrtillus L.)using Random Amplified Polymophic DNA (RAPDs) markers. Leaves and fruits were collected from two Natural habitats - the Balkan Mountain and the Mountain of Orpheus - Rhodope Mountain. All asseccions were screened for their polymorphism using five RAPD primers. The phylogenetic distance calculated from RAPD data ranged from0.29 to 0.82 thus indicating that a high Level of gene diversity is present in the selected genotypes. In order to characterize further the structure and grouping of berry accessions a dendrogram deriving from UPGMA cluster analysis based on the basic similarity (GS) coefficient Matrix was designed. RADP analysis provided to be efficient for discrimination of accessions within the same species With similar morphological characters.
Sammendrag
The production of accurate and reliable data on copper ecotoxicology of marine algae depends on the use of trace metal clean techniques during experimentation. We reviewed the methodologies used in the literature on copper ecotoxicology of marine macro- and microalgae, specifically the use of trace metal clean procedures such as the labware used (glassware vs. plasticware), methods of cleaning the labware (acid soaking and ultrapure water rinsing), stock solution preparation (copper source and acidification), and measurement and reporting of dissolved copper concentrations. In terms of taxonomic classification, the most studied algal groups were the Phyla Ochrophyta, Bacillariophyta, Rhodophyta, and Chlorophyta. In terms of methodology, ∼50% of the articles did not specify the labware, ∼25% used glassware, and ∼25% plasticware; ∼30% of the studies specified cleaning protocols for labware to remove trace metal impurities; the copper form used to prepare the stock solutions was specified in ∼80% of studies but acidification to stabilise the dissolved copper was performed in only ∼20%; and the dissolved copper concentration was measured in only ∼40% of studies. We discuss the importance of following trace metal clean techniques for the comparison and interpretation of data obtained on copper ecotoxicology in algae.
Sammendrag
In this paper, we estimate the cost-effectiveness of tillage methods as a measure to reduce phosphorus loss. The study was based on real-world information on costs. Data on phosphorus loss for different soil tillage methods were modelled. The cost-effectiveness of various soil tillage methods were related to autumn ploughing. The results showed large variation in cost-effectiveness related to erosion risk. Furthermore, spring harrowing was the most cost-effective method to reduce phosphorus loss, followed by autumn harrowing and spring ploughing in spring cereals. Implementation of changed tillage methods showed lower costs for spring cereals compared to winter wheat. The differences in costs between areas were most evident for spring tillage due to differences in yields and agronomic management. Cost-effectiveness is an important criterion in selecting mitigation methods, but due to large variations in the effect of changed tillage, these should be locally adapted to the high risk areas of erosion.
Sammendrag
The two-spotted spider mite, Tetranychus urticae, is a serious pest of numerous crops worldwide. Sustainable management solutions for T. urticae include predators and entomopathogens. Neozygites floridana is a naturally occurring obligate fungal pathogen of T. urticae and can cause declines in T. urticae populations. The purpose of this study was to determine whether releasing the predatory mite Phytoseiulus persimilis into T. urticae populations has the potential to increase transmission of N. floridana and accelerate the development of an epizootic. This is the first study quantifying the effect of P. persimilis on transmission of N. floridana to T. urticae in a controlled microcosm study. Our results show that introducing P. persimilis into T. urticae, populations increased the proportion of T. urticae infected with N. floridana. By the final sampling occasion, the number of T. urticae in the treatment with both the predator and the pathogen had declined to zero in both experiments, while in the fungus-only treatment T. urticae populations still persisted. We suggest that releasing P. persimilis into crops in which N. floridana is naturally present has the potential to improve spider mite control more than through predation alone.
Sammendrag
We assessed milk production with 24 mid-lactation Norwegian Red dairy cows on a spring pasture dominated by timothy (Phleum pratense) for a period of 21 days using three pasture allocation techniques (n=8). Cows received weekly allowances at once (7 day-set-paddocking; 7SP), grazed 1/7 of 7SP allowance each day (daily-strip-grazing; 1SG), or grazed like 1SG but also had access to the previously grazed part of the paddock (daily-forward-grazing; 1FG). We hypothesized that 7SP would deteriorate sward quality and quantity over the grazing days whilst the other two treatments would provide balanced pasture quality and intake. These changes were expected to result in differences in milk yield and its components. However, changes in sward chemical composition (e.g. neutral netergent fiber, crude protein) over the grazing days in each week were not different among treatments (treatment × grazing day; P>0.05). Furthermore, no effect of treatments on milk yield and its components was observed. Nonetheless, the effects of grazing days over a week on milk yield and components were different among treatments (treatment × grazing day; P<0.05). These treatment by grazing day interaction effects, in the absence main effect of treatment, could be due to fluctuations in daily DMI among treatments over the grazing days in each week.