Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2016
Sammendrag
Fungi within the Colletotrichum acutatum species complex occur asymptomatically on plant parts of many different plant species. Leaves from apple orchards in southern Norway were sampled, frozen for five hours and incubated for six days to reveal presence of asymptomatic infections of C. acutatum. Number of leaves (incidence) and leaf area covered (severity) with conidial masses of C. acutatum were assessed biweekly on cv. Aroma from late May to late September during three growing seasons. The first finding of conidial masses occurred in the second half of July, and there was a higher incidence occurring in August and September. Sampling of leaves from fruit spurs and vegetative shoots of cvs. Aroma and Elstar showed that conidial masses of C. acutatum developed on leaves on both shoot types, and there was no difference in incidence between these two types. The fungus was detected on leaves from six of eight commercial orchards of cv. Aroma over three years, with a mean incidence of 5.5 %. After storage, bitter rot was found on apple fruit from all eight orchards. There was no correlation between incidence of conidial masses of C. acutatum on leaves and on fruit. In all orchards and seasons investigated, incidence and severity on leaves varied from 0 to 67%and 0 to 85 %, respectively. The discovery of apple leaves containing conidial masses of C. acutatum clearly indicate for leaves as a potential source of inoculum for fruit infections.
Sammendrag
The necrotrophic fungus Drechslera teres causes net blotch disease in barley by secreting necrotrophic effectors (NEs) which, in the presence of corresponding host susceptibility factors (SF), act as virulence factors in order to enable host colonization. At present the resistance within most Norwegian cultivars is insufficient. This study aims at detecting QTL associated with resistance and susceptibility in the Nordic barley breeding material and at discovering new NE _ SF interactions. This knowledge together with an understanding of the genetic background of the Norwegian net blotch population will be utilized to speed up resistance breeding. Resistance of a segregating mapping population of a cross between the closely related Norwegian varieties Arve and Lavrans to three Norwegian D. teres isolates was assessed at seedling stage in the greenhouse and in adult plants in the field. QTL mapping revealed four major QTL on chromosomes 4H, 5H, 6H and 7H. The 5H and 6H QTL accounted for up to 47% and 14.1% of the genetic variance, respectively, and were found both in seedlings and adult plants with the latter QTL being an isolate-specific association. The high correlation of seedling and adult resistance (R2=0.49) suggests that components of adult plant resistance can be predicted already at the seedling stage. Selected isolates and their culture filtrates will be screened on selected barley lines to characterize novel NE - SF interactions and to map the corresponding sensitivity loci. Effector protein candidates will be purified and further analysed to verify their effect on disease development. Additionally, 365 Norwegian D. teres isolates and a selection of globally collected isolates are currently being ddRAD genotyped in order to obtain SNP markers to study the genetic diversity and population structure of the current Norwegian fungal population. This data will also allow us to perform Genome Wide Association Studies (GWAS) to identify potential novel NE genes.
Forfattere
Annette Dathe Johannes Auke Postma Maria Postma-Blaauw Jonathan Paul LynchSammendrag
Backgrounds and Aims Crops with reduced requirement for nitrogen (N) fertilizer would have substantial benefits in developed nations, while improving food security in developing nations. This study employs the functional structural plant model SimRoot to test the hypothesis that variation in the growth angles of axial roots of maize ( Zea mays L.) is an important determinant of N capture. Methods Six phenotypes contrasting in axial root growth angles were modelled for 42 d at seven soil nitrate levels from 10 to 250 kg ha −1 in a sand and a silt loam, and five precipitation regimes ranging from 0·5× to 1·5× of an ambient rainfall pattern. Model results were compared with soil N measurements of field sites with silt loam and loamy sand textures. Key Results For optimal nitrate uptake, root foraging must coincide with nitrate availability in the soil profile, which depends on soil type and precipitation regime. The benefit of specific root architectures for efficient N uptake increases with decreasing soil N content, while the effect of soil type increases with increasing soil N level. Extreme root architectures are beneficial under extreme environmental conditions. Extremely shallow root systems perform well under reduced precipitation, but perform poorly with ambient and greater precipitation. Dimorphic phenotypes with normal or shallow seminal and very steep nodal roots performed well in all scenarios, and consistently outperformed the steep phenotypes. Nitrate uptake increased under reduced leaching conditions in the silt loam and with low precipitation. Conclusions Results support the hypothesis that root growth angles are primary determinants of N acquisition in maize. With decreasing soil N status, optimal angles resulted in 15–50 % greater N acquisition over 42 d. Optimal root phenotypes for N capture varied with soil and precipitation regimes, suggesting that genetic selection for root phenotypes could be tailored to specific environments.
Sammendrag
Microdochium nivale (Fries) Samuels & Hallett is an important turfgrass pathogen on golf courses. Our objective was to evaluate Gliocladium catenulatum Gilman & Abbott and/or Streptomyces species for biological control of M. nivale on golf greens. The microbial agents were tested relative to fungicides and an untreated control in vitro and in five field trials from 2011 to 2014. G. catenulatum (Turf G+/WPG, Verdera OY, Finland) was applied from October to December and in March–April, while Streptomyces species (Turf S+/WPS, same manufacturer) was applied from May to October, both at four week intervals. In vitro, Streptomyces species suppressed the growth of M. nivale at 6 and 16°C, while G. catenulatum suppressed growth of M. nivale at 16°C only. In contrast, neither product, nor their combination, had any consistent effect in the field trials. A statistically significant reduction in Microdochium patch (from 3 to 2% of plot area) was seen in a trial on a green dominated by Festuca rubra L., but this reduction was deemed to be of little practical interest to the greenkeeper. Despite multiple applications over 3 yr to build up an antagonistic microflora, only fungicides reduced M. nivale significantly on greens dominated by Poa annua L. or Agrostis capillaris L., which generally had more disease. In conclusion, this research showed no potential of G. catenulatum or Streptomyces species to replace fungicides for control of M. nivale on northern-latitude golf greens.
Forfattere
Marta Camino-Serrano Elisabeth Graf Pannatier Sara Vicca Sebastiaan Luyssaert Mathieu Jonard Philippe Ciais Bertrand Guenet Bert Gielen Josep Peñuelas Jordi Sardans Peter Waldner Sophia Etzold Guia Cecchini Nicholas Clarke Zoran Galic Laure Gandois Karin Hansen Jim Johnson Uwe Klinck Zora Lachmanová Antti-Jussi Lindroos Henning Meesenburg Tiina M. Nieminen Tanja G. M. Sanders Kasia Sawicka Walter Seidling Anne Thimonier Elena Vanguelova Arne Verstraeten Lars Vesterdal Ivan A. JanssensSammendrag
Dissolved organic carbon (DOC) in surface waters is connected to DOC in soil solution through hydrological pathways. Therefore, it is expected that long-term dynamics of DOC in surface waters reflect DOC trends in soil solution. However, a multitude of site studies have failed so far to establish consistent trends in soil solution DOC, whereas increasing concentrations in European surface waters over the past decades appear to be the norm, possibly as a result of recovery from acidification. The objectives of this study were therefore to understand the long-term trends of soil solution DOC from a large number of European forests (ICP Forests Level II plots) and determine their main physico-chemical and biological controls. We applied trend analysis at two levels: (1) to the entire European dataset and (2) to the individual time series and related trends with plot characteristics, i.e., soil and vegetation properties, soil solution chemistry and atmospheric deposition loads. Analyses of the entire dataset showed an overall increasing trend in DOC concentrations in the organic layers, but, at individual plots and depths, there was no clear overall trend in soil solution DOC. The rate change in soil solution DOC ranged between −16.8 and +23 % yr−1 (median = +0.4 % yr−1) across Europe. The non-significant trends (40 %) outnumbered the increasing (35 %) and decreasing trends (25 %) across the 97 ICP Forests Level II sites. By means of multivariate statistics, we found increasing trends in DOC concentrations with increasing mean nitrate (NO3−) deposition and increasing trends in DOC concentrations with decreasing mean sulfate (SO42−) deposition, with the magnitude of these relationships depending on plot deposition history. While the attribution of increasing trends in DOC to the reduction of SO42− deposition could be confirmed in low to medium N deposition areas, in agreement with observations in surface waters, this was not the case in high N deposition areas. In conclusion, long-term trends of soil solution DOC reflected the interactions between controls acting at local (soil and vegetation properties) and regional (atmospheric deposition of SO42− and inorganic N) scales.
Sammendrag
Abstract Questions Vegetation mapping based on field surveys is time-consuming and expensive. Distribution modelling might be used to overcome these challenges. What is the performance of distribution modelling of vegetation compared to traditional vegetation mapping when projected locally? Does the modelling performance vary among ecosystems? Does vegetation type distribution and abundance influence the modelling performance? Location Gravfjellet, Øystre Slidre commune, southern Norway. Methods Two comparable neighbouring areas, each of 4 km2, were mapped for species-defined vegetation types. One area was used for model training, the other for model projection. Maximum entropy models were run for six vegetation types, two from each of the ecosystems present in the area: forest, wetland and mountain heath- and shrublands. For each ecosystem, one locally abundant and one locally rare vegetation type were tested. AUC, the area under the receiver operating curve, was used as the model selection criterion. Environmental variables (n = 9) were selected through a backwards selection scheme, and model complexity was kept low. The models were evaluated using independent data. Results Distribution modelling of vegetation types by local projection gave high AUC values, and the results were supported by the evaluation using independent data. The modelling ability was not affected by ecosystem differences. A negative relationship between the number of points used to train the models and the AUC value before evaluation suggests that models for locally rare vegetation types had better predictive performance than the models for abundant types. This result was not significant after evaluation. Conclusion Provided that relevant explanatory variables are available at an appropriate scale, and that field-validated training points are available, distribution modelling can be used for local projection of the six tested vegetation types from the boreal–alpine ecotone.
Forfattere
Johanna Gottschamel Andreas G. Lössl Stephanie Ruf Yanliang Wang Morten Skaugen Ralph Bock Jihong Liu ClarkeSammendrag
Abstract Dengue fever is a disease in many parts of the tropics and subtropics and about half the world’s popula- tion is at risk of infection according to the World Health Organization. Dengue is caused by any of the four related dengue virus serotypes DEN-1, -2, -3 and -4, which are transmitted to people by Aedes aegypti mosquitoes. Cur- rently there is only one vaccine (DengvaxiaÒ) available (limited to a few countries) on the market since 2015 after half a century’s intensive efforts. Affordable and accessible vaccines against dengue are hence still urgently needed. The dengue envelop protein domain III (EDIII), which is capable of eliciting serotype-specific neutralizing antibod- ies, has become the focus for subunit vaccine development. To contribute to the development of an accessible and affordable dengue vaccine, in the current study we have used plant-based vaccine production systems to generate a dengue subunit vaccine candidate in tobacco. Chloroplast genome engineering was applied to express serotype- specific recombinant EDIII proteins in tobacco chloroplasts using both constitutive and ethanol-inducible expression systems. Expression of a tetravalent antigen fusion con- struct combining EDIII polypeptides from all four ser- otypes was also attempted. Transplastomic EDIII- expressing tobacco lines were obtained and homoplasmy was verified by Southern blot analysis. Northern blot analyses showed expression of EDIII antigen-encoding genes. EDIII protein accumulation levels varied for the different recombinant EDIII proteins and the different expression systems, and reached between 0.8 and 1.6 % of total cellular protein. Our study demonstrates the suitability of the chloroplast compartment as a production site for an EDIII-based vaccine candidate against dengue fever and presents a GatewayÒ plastid transformation vector for inducible transgene expression.
Forfattere
Gudbrand Lien Subal Chandra Kumbhakar J. Brian HardakerSammendrag
Empirical studies have often shown wide differences in productivity among firms. Although several studies have sought to identify factors causing such differences, only a few studies have examined the effects of risk and risk aversion on productivity. In this study, using Norwegian dairy farming data for 2009, we examined the effects of different aspects of risk on productivity. We used a range of variables to construct indices of risk taking, risk perception and risk management. These indices were then included as arguments in an input distance function which represents the production technology. Our results show that these risk indices did affect productivity. Regional differences in productivity, though small, were also found to exist, suggesting that unobserved edaphic factors that differ between regions also affected productivity.
Forfattere
Frode VeggelandSammendrag
Artikkelen analyserer drivkrefter bak tilpasninger til EU. Fokus er på Norges handelsrelasjoner med EU på mat- og landbruksfeltet. Dette er felt som delvis omfattes av EØS-avtalen (matvarereguleringer) og delvis er holdt utenfor (landbrukspolitikk). Problemstillingen er: 1) Hvordan har handelsrelasjonene med EU utviklet seg på mat- og landbruksfeltet siden EØS-avtalen trådte i kraft? 2) Hva kan forklare Norges tilpasninger til EU? Artikkelen viser at Norge har tilpasset seg fullt ut på områder som er direkte omfattet av formelle forpliktelser i EØS-avtalen. Norge har også gjennomført en rekke andre tilpasninger til EU, noe som kan forklares med både sakskoplinger og økonomiske interesseavveininger, og med (uforpliktende) intensjoner i forholdet mellom EU og Norge om å legge til rette for handelsliberalisering. Artikkelen viser hvordan kombinasjonen av institusjonelle bindinger og økonomiske interesseavveininger har formet Norges tilpasning til EU, også på områder som ikke var underlagt EØS-forpliktelsene da avtalen trådte i kraft.
Sammendrag
Glucosinolates are plant secondary metabolites with important roles in plant defence against pathogens and pests and are also known for their health benefits. Understanding how environmental factors affect the level and composition of glucosinolates is therefore of importance in the perspective of climate change. In this study we analysed glucosinolates in Arabidopsis thaliana accessions when grown at constant standard (21 °C), moderate (15 °C) and low (9 °C) temperatures during three generations. In most of the tested accessions moderate and pronounced chilling temperatures led to higher levels of glucosinolates, especially aliphatic glucosinolates. Which temperature yielded the highest glucosinolate levels was accession-dependent. Transcriptional profiling revealed also accession-specific gene responses, but only a limited correlation between changes in glucosinolate-related gene expression and glucosinolate levels. Different growth temperatures in one generation did not consistently affect glucosinolate composition in subsequent generations, hence a clear transgenerational effect of temperature on glucosinolates was not observed.