Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2017
Sammendrag
Epigenetic memory in Norway spruce affects the timing of bud burst and bud set, vitally important adaptive traits for this long-lived forest species. Epigenetic memory is established in response to the temperature conditions during embryogenesis. Somatic embryogenesis at different epitype inducing (EpI) temperatures closely mimics the natural processes of epigenetic memory formation in seeds, giving rise to epigenetically different clonal plants in a reproducible and predictable manner, with respect to altered bud phenology. MicroRNAs (miRNAs) and other small non-coding RNAs (sRNAs) play an essential role in the regulation of plant gene expression and may affect this epigenetic mechanism. We used NGS sequencing and computational in silico methods to identify and profile conserved and novel miRNAs among small RNAs in embryogenic tissues of Norway spruce at three EpI temperatures (18, 23 and 28◦C). We detected three predominant classes of sRNAs related to a length of 24 nt, followed by a 21–22 nt class and a third 31 nt class of sRNAs. More than 2100 different miRNAs within the prevailing length 21–22 nt were identified. Profiling these putative miRNAs allowed identification of 1053 highly expressed miRNAs, including 523 conserved and 530 novels. 654 of these miRNAs were found to be differentially expressed (DEM) depending on EpI temperature. For most DEMs, we defined their putative mRNA targets. The targets represented mostly by transcripts of multiple-repeats proteins, like TIR, NBS-LRR, PPR and TPR repeat, Clathrin/VPS proteins, Myb-like, AP2, etc. Notably, 124 DE miRNAs targeted 203 differentially expressed epigenetic regulators. Developing Norway spruce embryos possess a more complex sRNA structure than that reported for somatic tissues. A variety of the predicted miRNAs showed distinct EpI temperature dependent expression patterns. These putative EpI miRNAs target spruce genes with a wide range of functions, including genes known to be involved in epigenetic regulation, which in turn could provide a feedback process leading to the formation of epigenetic marks. We suggest that TIR, NBS and LRR domain containing proteins could fulfill more general functions for signal transduction from external environmental stimuli and conversion them into molecular response. Fine-tuning of the miRNA production likely participates in both developmental regulation and epigenetic memory formation in Norway spruce.
Forfattere
Steffen Werne Felix Heckendorn Michael Roleda L Baumgartner Eduarda Molina-Alcaide A Drewek Vibeke LindSammendrag
Det er ikke registrert sammendrag
Forfattere
Andre van Eerde Johanna Gottschamel Hege Særvold Steen Sissel Haugslien Anna-Marja Aura Stephanie Ruf Ralph Bock Jihong Liu ClarkeSammendrag
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Forfattere
Eduarda Molina-Alcaide Maria Dolores Carro Michael Roleda Martin Riis Weisbjerg Vibeke Lind Margarita Novoa-GarridoSammendrag
Seaweeds have potentials as alternative feed for ruminants, but there is a limited knowledge on their nutritive value. Seven seaweed species collected along the coast above the Arctic circle of Norway, both in spring and autumn, were assessed for nutrients and total polyphenols (TEP) content, gas production kinetics and in vitro rumen fermentation in batch cultures of ruminal microorganisms. The seaweeds were three red species (Mastocarpus stellatus, Palmaria palmata and Porphyra sp.), three brown species (Alaria esculenta, Laminaria digitata and Pelvetia canaliculata) and one green species (Acrosiphonia sp.). Additionally, the abundance and diversity of total bacteria, protozoa and archaea in the cultures with the three red seaweeds collected in spring were analyzed by quantitative PCR and PCR-DGGE, respectively. The crude protein (CP) content varied widely. Pelvetia had the greatest (P < 0.001) ether extract (EE) content. Non-structural carbohydrates (NSC) content varied from 135 to 541 g/kg DM with brown seaweeds having the greatest values. Ash and CP contents were higher in spring than in autumn (P = 0.020 and 0.003, respectively), whereas concentrations of EE and NSC were not affected by collecting season (P = 0.208–0.341). The TEP values ranged from 1.46 to 50.3 mg/g dry matter (DM), and differed (P < 0.001) among seaweed species and collecting season, being greater in autumn than in spring. The DM effective degradability (DMED), estimated from gas production parameters for a rumen passage rate of 3.0% per h, ranged from 424 to 652 g/kg, the highest values were recorded for Mastocarpus stellatus and Porphyra sp. The lowest DMED values were registered for Pelvetia canaliculata and Acrosiphonia sp. In 24-h incubations (500 mg DM), Palmaria palmata had the highest (P < 0.05) volatile fatty acids (VFA) and methane production (4.34 and 0.761 mmol, respectively) and the lowest (P < 0.05) final pH values and acetate to propionate ratios (6.57 and 2.34, respectively). There were no differences (P > 0.05) among the other seaweeds in VFA production, but Porphyra sp. had the second highest methane production (P < 0.05; 0.491 mmol) compared with the other seaweeds (0.361 mmol; averaged value). The methane/total VFA ratio was not affected (P > 0.05) by either seaweed species or the collection season. Higher final pH (P < 0.05) and lower (P < 0.05) methane and VFA production, ammonia-N concentrations and DMED values were promoted by the fermentation of seaweed collected in autumn compared with those from spring. Among the red seaweeds, there were no species-specific differences (P > 0.05) in the abundance or the diversity of total bacteria, protozoa and archaea. In the PCR-DGGE analysis, samples were separated by the incubation run for all microbial populations analyzed, but not by seaweed species. The results indicate that seaweed species differ markedly in their in vitro rumen degradation, and that samples collected in autumn had lower rumen degradability than those collected in spring.
Forfattere
Melissa Magerøy Denis Lachance Sharon Jancsik Genevieve Parent Armand Seguin John Mackay Joerg BohlmannSammendrag
Det er ikke registrert sammendrag
Forfattere
Ikram Belghit Josef Daiel Rasinger Svenja Heesch Irene Biancarosa Nina Sylvia Liland Bente Elisabeth Torstensen Rune Waagbø Erik-Jan Lock Christian Guido BrucknerSammendrag
In-depth metabolic profiling, also termed metabolomics, provides detailed information about the biochemical phenotype of an organism. Besides improving our understanding of biochemical processes, metabolomics is used for environmental monitoring, natural product discovery, or even chemotaxonomy, among others. However, for marine macroalgae, comparative large-scale metabolomics studies are lacking, even though seaweeds belong to the most important aquatic primary producers. In this study, we present via a broad scale systematic metabolomics survey 391 metabolites from 21 seaweeds species, representing brown, red and green algae. We demonstrate clear differences in metabolite composition of these seaweeds, reflecting their taxonomic classification. We highlight these differences for amino acid, amino acid derivative and peptide metabolites, energy and carbohydrate metabolites, for lipid, fatty acid and sterol metabolites and for secondary metabolites, including selected metabolic pathways such as the urea cycle, the citrate cycle and the glyconeogenesis/glycolysis, besides others. Additionally, we link selected seaweed biochemical properties to potential pharmaceutical and nutraceutical applications.
Forfattere
John Marshall Bryden Stig Strandli Gezelius Karen Refsgaard Judith SutzSammendrag
In this introduction to the special issue on inclusive innovation in the bioeconomy, the authors highlight inclusive innovation’s significance to economies that provide the vital resources of food, water, and energy. Innovation in the bioeconomy raises questions of environmental sustainability, human survival, social justice, and human rights. This article thus emphasizes, especially, the roles that institutions play regarding innovation in the bioeconomy. The authors suggest that inclusive innovation be defined as new ways of improving the lives of the most needy. They outline research implications of this definition, and relate these implications to debates about the modes and ethics of innovation. They argue that innovation systems’ design affects these systems’ potential for inclusiveness as well as their value premises. Finally, the contributions to this special issue are introduced and discussed in light of the special issue’s overall purpose and framework.
Sammendrag
Det er ikke registrert sammendrag
Sammendrag
BACKGROUND Vegetable growers in Arctic areas must increasingly rely on market strategies based on regional origin and product quality. Swede roots (rutabaga) were grown in a phytotron to investigate the effect of high latitude light conditions on sensory quality and some health and sensory-related compounds. Experimental treatments included modifications of 24 h natural day length (69° 39' N) by moving plants at daily intervals to dark chambers with either no light, fluorescent growth light and/or low intensity photoperiod extension. RESULTS Shortening the photosynthetic light period to 12 h produced smaller roots than 15.7 h and 18 h, with highest scores for bitter and sulfur taste, and lowest scores for sweetness, acidic taste and fibrousness. The photoperiod in combination with the photosynthetic light period also had an influence on glucosinolate (GLS) contents, with lowest concentrations in 24 h natural light and highest in 12 h natural light. Concentrations of vitamin C, glucose, fructose and sucrose were not significantly influenced by any of the treatments. CONCLUSION High latitude light conditions, with long photosynthetic light periods and 24 h photoperiod, can enhance sweet/less bitter taste and reduce GLS contents in swede roots, compared to growth under short day conditions. This influence of light conditions on eating quality may benefit marketing of regional products from high latitudes. © 2017 Society of Chemical Industry
Forfattere
Laura Jaakola Laura Zoratti Lara Giongo Katja Karppinen Eivind Uleberg Inger Martinussen Hely HäggmanSammendrag
Anthocyanins are the main pigments in the Vaccinium berries. Besides contributing to the characteristic bluish to reddish colors of the berries, anthocyanins are also recognized as potential health beneficial compounds. The biosynthesis of anthocyanins is well understood and the key regulators have been characterized in many plant species. The final anthocyanin composition in ripe berries is regulated by developmental and environmental factors, determined by the genetic background. We have studied the role of different light and temperature conditions on the accumulation of anthocyanins in wild bilberry (V. myrtillus L.) and cultivated highbush blueberry (V. corymbosum L.), in controlled and in field experiments. These experiments include specific growth conditions with clones from northern and southern latitudes as well as from different altitudes. The results show speciesspecific interactions in quantitative and qualitative composition of anthocyanins as a response to light and temperature conditions. For instance, lower temperature and specific light wavelengths induced accumulation of delphinidin glycosides in bilberry.