Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2024
Forfattere
Mirella Ludwiczewska Paulina Paluchowska Marta Janiszewska Erik Lysøe Simeon Rossmann Sylwester Sobkowiak Zhimin Yin May Bente Brurberg Jadwiga ŚliwkaSammendrag
Det er ikke registrert sammendrag
Forfattere
Paulina Paluchowska Zhimin Yin Erik Lysøe Simeon Rossmann Mirella Ludwiczewska Marta Janiszewska May Bente Brurberg Jadwiga ŚliwkaSammendrag
Det er ikke registrert sammendrag
Forfattere
Paulina Paluchowska Simeon Rossmann Erik Lysøe Marta Janiszewska Krystyna Michalak Rasoul Heydarnajad Giglou Mousa Torabi Giglou May Bente Brurberg Jadwiga Śliwka Zhimin YinSammendrag
Background Potato virus Y (PVY) is among the economically most damaging viral pathogen in production of potato (Solanum tuberosum) worldwide. The gene Rysto derived from the wild potato relative Solanum stoloniferum confers extreme resistance to PVY. Results The presence and diversity of Rysto were investigated in wild relatives of potato (298 genotypes representing 29 accessions of 26 tuber-bearing Solanum species) using PacBio amplicon sequencing. A total of 55 unique Rysto-like sequences were identified in 72 genotypes representing 12 accessions of 10 Solanum species and six resistant controls (potato cultivars Alicja, Bzura, Hinga, Nimfy, White Lady and breeding line PW363). The 55 Rysto-like sequences showed 89.87 to 99.98% nucleotide identity to the Rysto reference gene, and these encoded in total 45 unique protein sequences. While Rysto-like26 identified in Alicja, Bzura, White Lady and Rysto-like16 in PW363 encode a protein identical to the Rysto reference, the remaining 44 predicted Rysto-like proteins were 65.93 to 99.92% identical to the reference. Higher levels of diversity of the Rysto-like sequences were found in the wild relatives of potato than in the resistant control cultivars. The TIR and NB-ARC domains were the most conserved within the Rysto-like proteins, while the LRR and C-JID domains were more variable. Several Solanum species, including S. antipoviczii and S. hougasii, showed resistance to PVY. This study demonstrated Hyoscyamus niger, a Solanaceae species distantly related to Solanum, as a host of PVY. Conclusions The new Rysto-like variants and the identified PVY resistant potato genotypes are potential resistance sources against PVY in potato breeding. Identification of H. niger as a host for PVY is important for cultivation of this plant, studies on the PVY management, its ecology, and migrations. The amplicon sequencing based on PacBio SMRT and the following data analysis pipeline described in our work may be applied to obtain the nucleotide sequences and analyze any full-length genes from any, even polyploid, organisms. Keywords Amplicon sequencing, AmpSeq, Extreme resistance, Hyoscyamus niger, PacBio, Physalis peruviana, PVY, Solanum
Sammendrag
Phytophthora cactorum is a plant pathogenic oomycete that causes crown rot in strawberry leading to significant economic losses every year. To invade the host, P. cactorum secretes an arsenal of effectors that can manipulate host physiology and impair its defense system promoting infection. A transcriptome analysis was conducted on a susceptible wild strawberry genotype (Fragaria vesca) 48 hours post inoculation with P. cactorum to identify effectors expressed during the early infection stage. The analysis revealed 4,668 P. cactorum genes expressed during infection of F. vesca. A total of 539 secreted proteins encoded by transcripts were identified, including 120 carbohydrate-active enzymes, 40 RXLRs, 23 proteolytic enzymes, nine elicitins, seven cysteine rich proteins, seven necrosis inducing proteins and 216 hypothetical proteins with unknown function. Twenty of the 40 RXLR effector candidates were transiently expressed in Nicotiana benthamiana using agroinfiltration and five previously unreported RXLR effector genes (Pc741, Pc8318, Pc10890, Pc20813, and Pc22290) triggered cell death when transiently expressed. The identified cell death inducing RXLR effectors showed 31–66% identity to known RXLR effectors in different Phytophthora species having roles in pathogenicity including both activation and suppression of defense response in the host. Furthermore, homology analysis revealed that these cell death inducing RXLR effectors were highly conserved (82 - 100% identity) across 23 different strains of P. cactorum originating from apple or strawberry.
Sammendrag
Organisk materiale i jord er den primære næringskilden til alt jordliv. Høyt innhold av organisk materiale gir høy mikrobiell aktivitet som bidrar til god jordhelse. Dette kan ha hemmende effekt på plantesjukdommer som forårsakes av smitte via jord. Innhold av organisk materiale i jord og mikrobiell aktivitet påvirkes av dyrkingssystem, jordtype, lokalitet og klima.
Sammendrag
Det er ikke registrert sammendrag
Sammendrag
Det er ikke registrert sammendrag
Forfattere
Jiunn Luh Tan Nina Trandem Zhibo Hamborg Bijaya Sapkota Dag-Ragnar Blystad Jana Fránová Rostislav ZemekSammendrag
The adoption of the European Green Deal will limit acaricide use in high value crops like raspberry, to be replaced by biological control and other alternative strategies. More basic knowledge on mites in such crops is then necessary, like species, density, and their role as vectors of plant diseases. This study had four aims, focusing on raspberry leaves at northern altitude: (1) identify mite species; (2) study mite population densities; (3) investigate mite intra-plant distribution; (4) investigate co-occurrence of phytophagous mites, raspberry leaf blotch disorder and raspberry leaf blotch virus (RLBV). Four sites in south-eastern Norway were sampled five times. Floricanes from different parts of the sites were collected, taking one leaf from each of the upper, middle, and bottom zones of the cane. Mites were extracted with a washing technique and processed for species identification and RLBV detection. Mites and leaves were tested for RLBV by reverse transcription polymerase chain reaction (RT-PCR) with virus-specific primers. Phytophagous mites, Phyllocoptes gracilis, Tetranychus urticae, and Neotetranychus rubi, and predatory mites, Anystis baccarum and Typhlodromus (Typhlodromus) pyri were identified. All phytophagous mites in cultivated raspberry preferred the upper zone of floricanes, while in non-cultivated raspberry, they preferred the middle zone. The presence of phytophagous mites did not lead to raspberry leaf blotch disorder during this study. RLBV was detected in 1.3% of the sampled plants, none of them with leaf blotch symptoms, and in 4.3% of P. gracilis samples, and in some spider mite samples, implying that Tetranychids could also be vectors of RLBV.
Sammendrag
Aim of study: Thrips in raspberry crops are receiving attention in Scandinavian raspberry production because of the increasing sighting of their presence in the flowers. Specific information on thrips species occurring in raspberry and their damage potential is scarce, making thrips management challenging. Therefore, this study aimed to identify thrips in the flowers of cultivated raspberry, Rubus idaeus L., in South Norway. Area of study: Sogndal, Luster and Frogn, Southern Norway Material and methods: Adult thrips were sampled from eight commercial raspberry orchards in the counties Vestland and Viken in June-July 2022. Thrips were mounted using Hoyer’s medium and a total of 213 specimens were morphologically identified. Main results: Five species of thrips were found, Thrips fuscipennis Haliday, Thrips major Uzel, Thrips flavus Schrank, Thrips vulgatissimus Haliday and Thrips brevicornis Priesner. Most specimens were T. flavus, followed by T. fuscipennis and T. vulgatissimus. Research highlights: Among the five species found, only T. fuscipennis has previously been reported in cultivated raspberry, but all five species are associated with flowers of many plants. The findings imply a larger and more geographically varied thrips fauna on raspberry than currently documented. This should be taken into account in future studies on thrips management in raspberry.
Forfattere
Theresa Weigl Jorunn Børve Emily Follett Ingunn Øvsthus Carl Gunnar Fossdal Hanne Larsen Siv Fagertun RembergSammendrag
https://ehc.usamv.ro/wp-content/uploads/2024/05/S10-Book-of-Abstracts.pdf The mid-early ripening cultivar, 'Summerred‘, is popular among consumers and widely grown in Norway. However, 'Summerred‘ fruit is prone to rapid softening and development of senescence-related disorders, especially senescent breakdown. Calcium can have a significant role in maintaining firmness and delaying senescence of fruits. In a two-year study, foliar application of calcium chloride (CaCl2) was conducted six times, with varying weather conditions between the growing seasons. Fruit was harvested at optimal commercial maturity and stored at 4 °C for either six or nine weeks, followed by simulated shelf-life conditions at 20 °C. Ethylene levels were monitored during storage to detect ripening discrepancies. At harvest, CaCl2-treated fruit exhibited significantly lower ethylene production compared to untreated fruit, although no differences were observed during the end of the storage period. Senescent breakdown showed significant variability between the two seasons, with an incidence of up to 15 % in the first season and nearly no incidence in the second season. Senescent breakdown increased with storage length but was not affected by foliar CaCl2 application. Real-time PCR analysis of fruit flesh samples revealed increased expression of polygalacturonase and β-galactosidases genes after storage, indicating their involvement in apple softening. Notably, there were no differences in gene expression between CaCl2-treated and untreated fruit after storage. Expression patterns of genes involved in ethylene biosynthesis at harvest were different between the two seasons. Higher expression was observed in the year when more disorder development occurred, indicating advanced maturity at harvest. There were no significant differences in Streif index between the two years.