Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2018
Forfattere
Milan Flach Sebastian Sippel Fabian Gans Ana Bastos Alexander Brenning Markus Reichstein Miguel D. MahechaSammendrag
Combined droughts and heatwaves are among those compound extreme events that induce severe impacts on the terrestrial biosphere and human health. A record breaking hot and dry compound event hit western Russia in summer 2010 (Russian heatwave, RHW). Events of this kind are relevant from a hydrometeorological perspective, but are also interesting from a biospheric point of view because of their impacts on ecosystems, e.g., reductions in the terrestrial carbon storage. Integrating both perspectives might facilitate our knowledge about the RHW. We revisit the RHW from both a biospheric and a hydrometeorological perspective. We apply a recently developed multivariate anomaly detection approach to a set of hydrometeorological variables, and then to multiple biospheric variables relevant to describe the RHW. One main finding is that the extreme event identified in the hydrometeorological variables leads to multidirectional responses in biospheric variables, e.g., positive and negative anomalies in gross primary production (GPP). In particular, the region of reduced summer ecosystem production does not match the area identified as extreme in the hydrometeorological variables. The reason is that forest-dominated ecosystems in the higher latitudes respond with unusually high productivity to the RHW. Furthermore, the RHW was preceded by an anomalously warm spring, which leads annually integrated to a partial compensation of 54% (36% in the preceding spring, 18% in summer) of the reduced GPP in southern agriculturally dominated ecosystems. Our results show that an ecosystem-specific and multivariate perspective on extreme events can reveal multiple facets of extreme events by simultaneously integrating several data streams irrespective of impact direction and the variables' domain. Our study exemplifies the need for robust multivariate analytic approaches to detect extreme events in both hydrometeorological conditions and associated biosphere responses to fully characterize the effects of extremes, including possible compensatory effects in space and time.
Sammendrag
Rapporten beskriver, og gir resultater fra, «Overvåkingsprogrammet for skog i verneområder» som omfatter nasjonalparker og naturreservater som var etablert pr. 1.1.2016. Registreringene ble gjennomført av Landsskogtakseringen i perioden 2012-2016. Statistikk for arealtyper, skogtilstand og miljøverdier som er viktig for biologisk mangfold sammenstilles. [...] Denne rapporten er en revidert utgave av NIBIO rapport 3(142) 2017, M-921. Kapittel 4.5: Volum, og tilhørende tabeller i vedlegget, er oppdatert på grunn av endring i grunnlagsdata.
Sammendrag
Antallet kunstgressbaner har økt kraftig i Norge de siste 15 årene, og det finnes per i dag 1750 kunstgressbaner i Norge. De oppmalte bildekkene og andre typer granulat fra nyprodusert industrigummi som brukes på kunstgressbaner er nå ansett som en av de største landbaserte kildene til mikroplast. Det viser seg at selv en godt driftet bane sprer granulatet i det ytre miljøet, spesielt baner med vinterdrift. I Vannområde Indre Oslofjord Vest tilsvarer dette mer enn 100 tonn granulat per år, som slippes ut i naturen. Vannområdet ba NIBIO om å ta jordprøver rundt tre av disse fotballbanene med vinterdrift for å bekrefte utlekking fra banene. Jordprøver viste at store mengder – opp til flere kg per kvadratmeter – finnes i nærheten av kunstgressbanene, og analysen av granulatet med simultan termisk analyse og Fourier-transformert infrarød spektroskopi ga oss innsyn i den kjemiske sammensetning av disse granulatpartiklene. Dette blir presentert i foredraget, samt tiltak som kan iverksettes for å redusere tap av granulat rundt kunstgressbaner.
Sammendrag
Bark beetles and their symbiotic bluestain fungi kill more trees than all other natural factors and cause great economic losses in Norway spruce and other conifers. The tree's natural defenses are the most important factor maintaining bark beetle-fungus complexes at low, endemic levels. Spraying Norway spruce trees with the plant hormone methyl jasmonate (MeJA) primes tree defenses without eliciting notable induced defenses, but enables the trees to respond much more quickly and strongly when challenged by bark beetles or fungi several weeks after treatment. This phenomenon, known as defense priming, is a form of acquired resistance that enables cost-effective and vigorous defense responses. In field experiments with 50-year-old clonal spruce trees terpene concentrations in the bark increased 60-fold within 24 h after mechanical wounding of MeJA primed trees, compared with a 13-fold increase in unprimed control trees. We also observed altered transcriptional patterns in primed trees using Illumina deep transcriptome sequencing. When wounded, primed trees launched vigorous induced defenses with significant differential regulation of gene transcripts, such as those involved in phenylpropanoid synthesis leading to lignification. Resistance-like genes, such as the NB-LRR coding genes, are also more rapidly induced in primed than in unprimed trees. Transcriptome results from primed but unwounded trees indicate an alteration in the state of the chromatin, resembling changes associated with the activity of the epigenetic machinery creating long-lasting epigenetic marks. We do not know yet how long the primed state is activated in Norway spruce, but our data so far indicate that it may last for at least 3 years.
Forfattere
Pieternella C. Luttikhuizen Freek H. M. van den Heuvel Celine Rebours Harry J. Witte Judith D. L. van Bleijswijk Klaas TimmermansSammendrag
Kelp aquaculture is globally developing steadily as human food source, along with other applications. One of the newer crop species is Saccharina latissima, a northern hemisphere kelp inhabiting temperate to arctic rocky shores. To protect and docu-ment its natural genetic variation at the onset of this novel aquaculture, as well as increase knowledge on its taxonomy and phylogeography, we collected new geneticdata, both nuclear and mitochondrial, and combined it with previous knowledge to estimate genetic connectivity and infer colonization history. Isolation-with- migration coalescent analyses demonstrate that gene flow among the sampled locations is vir -tually nonexistent. An updated scenario for the origin and colonization history of S. latissima is developed as follows: We propose that the species (or species complex) originated in the northwest Pacific, crossed to the northeast Pacific in the Miocene, and then crossed the Bering Strait after its opening ~5.5 Ma into the Arctic and northeast Atlantic. It subsequently crossed the Atlantic from east to west. During the Pleistocene, it was compressed in the south with evidence for northern refugia in Europe. Postglacial recolonization led to secondary contact in the Canadian Arctic. Saccharina cichorioides is shown to probably belong to the S. latissima species com -plex and to derive from ancestral populations in the Asian North Pacific. Our novel approach of comparing inferred gene flow based on coalescent analysis versus Wright’s island model suggests that equilibrium levels of differentiation have not yet been reached in Europe and, hence, that genetic differentiation is expected to in -crease further if populations are left undisturbed.
Sammendrag
CAN THE ALERTNESS OF ICELANDIC LEADERSHEEP HELP TO PROTECT SHEEP FLOCKS AGAINST PREDATORS? Emma BRUNBERG 1), Lise GRØVA 2), Emma EYTHÓRSDÓTTIR 3), Ólafur R. DÝRMUNDSSON 4) 1) NORSØK, Norwegian Centre for Organic Agriculture, Gunnars veg 6, 6630 Tingvoll, Norway; emma.brunberg@djurskyddet.se 2) NIBIO, Norwegian Institute of Bioeconomy Research, Gunnars veg 6, 6630 Tingvoll, Norway; lise.grova@nibio.no 3) LBHÍ, Agricultural University of Iceland, Árleyni 22, 112 Reykjavík, Iceland , emma@lbhi.is 4) Jórusel 12, 109 Reykjavík, Iceland, oldyrm@gmail.com Icelandic leadersheep, a unique sub-breed of the North European short-tailed Iceland breed, are known for their strongly inherited alertness and urge to lead their flock. They have been known through centuries for their outstanding behavioural abilities and intelligence and have not been selected for production traits like other Icelandic sheep. The behavioural traits of these sheep have attracted attention; particularly their alertness and the possibility that this could play a role in protecting sheep flocks against predator attacks. Norwegian scientists have shown breed differences in sheep mortality at summer pastures due to predators. A joint Icelandic/Norwegian project was initiated to test the hypothesis that the presence of Icelandic leadersheep affects flock behaviour when exposed to a predator model. Detecting such differences can clearly be regarded as being of both economic and welfare importance. Since it was not feasible to transport Icelandic leadersheep to Norway it was decided to test their alertness in comparison with that of other sheep in Iceland. An experiment was carried out on Hestur Sheep Experimental Farm in W- Iceland during two days in November 2016 using a total of 66 ewes divided into 11 groups. Six of the groups consisted of one Icelandic leadersheep and five Icelandic sheep (LSG), the remaining five groups consisted of six Icelandic sheep (ISG). The predator model tests took place within a fenced, rectangular pasture of 50m x 25m adjacent to a sheep house. All 11 groups were exposed to the same three treatments: human-, dog- and drone test, after a 10 minutes habituation period. The order of the treatments was randomized and there was a minimum 5 minutes interval between each test. All tests were video recorded. The behaviour observations recorded were; eat, stand walk, run and „other“. Recordings were made every 5 seconds during a two-minute period before and after test period, as well as every 5 seconds in 5*30second periods during each of the human, dog and drone treatment. Statistical analyses were conducted using the GLIMMIX procedure in SAS. There was a significant difference in behaviour between the groups with LSG compared to ISG. The LSG spent significantly more time feeding than the ISG groups for all tests, especially in the period after each test was finished, and it hence seems the LSG recover more quickly after a predator test. Including an Icelandic leadersheep into the flock affects behaviour. This should be further elaborated in commercial settings in order to understand the impact and relevance of including this genetic trait in sheep farming. Keywords: sheep, behaviour, predators, Icelandic leadersheep, predator model
Forfattere
Victor Phani Vishal S. Somvanshi Rohit N. Shukla Keith Davies Uma RaoSammendrag
Background: Southern root-knot nematode Meloidogyne incognita (Kofoid and White, 1919), Chitwood, 1949 is a key pest of agricultural crops. Pasteuria penetrans is a hyperparasitic bacterium capable of suppressing the nematode reproduction, and represents a typical coevolved pathogen-hyperparasite system. Attachment of Pasteuria endospores to the cuticle of second-stage nematode juveniles is the first and pivotal step in the bacterial infection. RNA-Seq was used to understand the early transcriptional response of the root-knot nematode at 8 h post Pasteuria endospore attachment. Results: A total of 52,485 transcripts were assembled from the high quality (HQ) reads, out of which 582 transcripts were found differentially expressed in the Pasteuria endospore encumbered J2 s, of which 229 were up-regulated and 353 were down-regulated. Pasteuria infection caused a suppression of the protein synthesis machinery of the nematode. Several of the differentially expressed transcripts were putatively involved in nematode innate immunity, signaling, stress responses, endospore attachment process and post-attachment behavioral modification of the juveniles. The expression profiles of fifteen selected transcripts were validated to be true by the qRT PCR. RNAi based silencing of transcripts coding for fructose bisphosphate aldolase and glucosyl transferase caused a reduction in endospore attachment as compared to the controls, whereas, silencing of aspartic protease and ubiquitin coding transcripts resulted in higher incidence of endospore attachment on the nematode cuticle. Conclusions: Here we provide evidence of an early transcriptional response by the nematode upon infection by Pasteuria prior to root invasion. We found that adhesion of Pasteuria endospores to the cuticle induced a downregulated protein response in the nematode. In addition, we show that fructose bisphosphate aldolase, glucosyl transferase, aspartic protease and ubiquitin coding transcripts are involved in modulating the endospore attachment on the nematode cuticle. Our results add new and significant information to the existing knowledge on early molecular interaction between M. incognita and P. penetrans.
Forfattere
Leonardo Ciaccheri Lorenza Tuccio Andrea A. Mencaglia Anna G. Mignani Ewelina Hallmann Kalina Sikorska-Zimny Stanislaw Kaniszewski Michel Verheul Giovanni AgatiSammendrag
Non-destructive tools for evaluating the lycopene content in tomatoes are of great interest to the entire fruit chain because of an increasing demand for beneficial health products. With the aim of developing compact low-cost reflectance sensors for lycopene determination, we compared Partial Least Squares (PLS) prediction models by using either directional or total reflectance in the 500–750 nm range. Directional reflectance at 45° with respect to the LED lighting direction was acquired by means of a compact spectrometer sensor. Total reflectance was acquired through a 50-mm integrating sphere connected to a spectrometer. The analysis was conducted on two hydroponic greenhouse cultivated red tomato varieties, namely the large round ‘Dometica’ (average diameter: 57 mm) and the small cherry ‘Juanita’ (average diameter: 26 mm). For both varieties, the spectral variance of directional reflectance was well correlated to that of total reflectance. The performances of the PLS prediction models were also similar, with R2 of cross-validation between 0.73 and 0.81. The prediction error, relative to the mean lycopene content of full ripe tomatoes, was similar: i.e. around 16–17% for both varieties and sensors. Our results showed that directional reflectance measured by means of portable, low-cost and compact LED-based sensors can be used with an adequate precision for the non-destructive assessment of lycopene in tomatoes.
Forfattere
Shinsaku Sasai Keisuke Tamura Motoaki Tojo Maria-Luz Herrero Tamotsu Hoshino Satoshi T. Ohki Tomofumi MochizukiSammendrag
We investigated virus infection in the oomycete Pythium polare from the Arctic. From 39 isolates investigated, 14 contained virus-like double-stranded RNA (dsRNA). Next generation sequencing revealed that the P. polare isolate OPU1176 contained three different virus-like sequences. We determined the full-length genome sequence of one of them. The 5397 nt-length genome had two overlapped open reading frames (ORFs) consistent with a toti and toti-like viruses, that we named Pythium polare RNA virus 1 (PpRV1). The ORF2 encoded an RNAdependent RNA polymerase (RdRp). The shifty heptamer motif and RNA pseudoknot were predicted near the stop codon of ORF1, implying that the RdRp could be translated as a fusion protein with the ORF1 protein. Phylogenetic analysis with deduced RdRp amino acid sequences indicated that oomycete virus PpRV1 was closely related to the unclassified arthropod toti-like viruses. The comparison of PpRV1-free and -infected lines suggested that PpRV1 infected in a symptomless manner.
Forfattere
Johannes Deelstra Sekhar Udaya Nagothu Krishna R. Kakumanu Yella R. Kaluvai Surresh R. KallamSammendrag
Saving water in irrigated agriculture is a high priority in areas with scarce water resources and impacted by climate change. This paper presents results of measurements on water Productivity (WP) under alternative rice growing practices such as alternating wetting and drying,direct seeded rice, modified systems of rice intensification and conventional paddy rice (NI)in two selected districts (Guntur in Andhra Pradesh and Nalgonda in Telangana, India). Under alternative practices, the yields varied from 5.72 to 6.11 t/ha compared with 4.71 t/ha under paddy rice. The average water application varied from 991 to 1494 mm under alternative practices while average application in conventional paddy rice was 2242 mm. Higher yield and lower water application led to an increase in WP varying from 0.45 to 0.59 kg/m3 under alternative practices compared with 0.22 kg/m3 under conventional paddy rice. The measurements showed that less water can be used to produce more crop under alternative rice growing practices. The results are important for water-scarce areas, providing useful information to policy makers, farmers, agricultural departments and water management boards in devising future climate-smart adaptation and mitigation strategies.