Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2025
Sammendrag
The limited standards for the rigorous and objective use of mitochondrial genomes (mitogenomes) can lead to uncertainties regarding the phylogenetic relationships of taxa under varying evolutionary constraints. The mitogenome exhibits heterogeneity in base composition, and evolutionary rates may vary across different regions, which can cause empirical data to violate assumptions of the applied evolutionary models. Consequently, the unique evolutionary signatures of the dataset must be carefully evaluated before selecting an appropriate approach for phylogenomic inference. Here, we present the bioinformatic pipeline and code used to expand the mitogenome phylogeny of the order Carcharhiniformes (groundsharks), with a focus on houndsharks (Chondrichthyes: Triakidae). We present a rigorous approach for addressing difficult-to-resolve phylogenies, incorporating multi-species coalescent modelling (MSCM) to address gene/species tree discordance. The protocol describes carefully designed approaches for preparing alignments, partitioning datasets, assigning models of evolution, inferring phylogenies based on traditional site-homogenous concatenation approaches as well as under multispecies coalescent and site heterogenous models, and generating statistical data for comparison of different topological outcomes. The datasets required to run our analyses are available on GitHub and Dryad repositories.
Sammendrag
Observations of two apparent phenotypic expressions (morphodemes) of the composite thallus of the lichen-forming ascomycete species Ricasolia amplissima (Scop.) De Not. (formerly Lobaria amplissima (Scop.) Forss.) inspired us to investigate the morphological and genetic variation of the species in Norway. The morphodemes differ in thallus shape and occurrence of apothecia and/or cephalodia, each dominating in climatically different parts of southern Norway. We investigated the morphology of herbarium collections as well as fresh samples from various areas, including localities where the two morphodemes occur together. The nrITS barcode marker was sequenced to investigate the genetic variation along the climatic gradient of the Hardangerfjord area. We also included barcode sequences of specimens from other parts of the world in order to establish if the Norwegian pattern of variation has a wider geographical significance. Results suggest that the genetic variation found in Ricasolia amplissima corresponds to morphology independently of geography/climate. The two haplotype groups cluster in two distinct sister clades, however, the within-species variation is too small to justify taxonomic recognition. Specimens with the cephalodiate morphodeme and its haplotypes are mainly found in the oceanic west, whereas specimens with apotheciate morphodemes and its haplotypes occur mainly in the drier eastern parts. The results can be interpreted as 1) immigration to Norway from different gene pools in separate glacial refugia, or, 2) natural selection for water efficient cephalodiate morphodemes in the oceanic west and apotheciate (sexually reproducing) in drier suboceanic east parts of Norway. We argue that within-species genetic variation should always be considered before conservation actions such as transplants of lichen thalli are taken.
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Forfattere
Tatsiana EspevigSammendrag
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Inger HansenSammendrag
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Inger HansenSammendrag
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Inger HansenSammendrag
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Inger HansenSammendrag
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Inger HansenSammendrag
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