Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2016
Forfattere
Rasmus John Normand Frandsen Silas A. Rasmussen Peter B. Knudsen Silvio Uhlig Dirk Petersen Erik Lysøe Charlotte H. Gotfredsen Henriette Giese Thomas O. LarsenSammendrag
Biosynthesis of the black perithecial pigment in the filamentous fungus Fusarium graminearum is dependent on the polyketide synthase PGL1 (oPKS3). A seven-membered PGL1 gene cluster was identified by over-expression of the cluster specific transcription factor pglR. Targeted gene replacement showed that PGL1, pglJ, pglM and pglV were essential for the production of the perithecial pigment. Over-expression of PGL1 resulted in the production of 6-O-demethyl-5-deoxybostrycoidin (1), 5-deoxybostrycoidin (2), and three novel compounds 5-deoxybostrycoidin anthrone (3), 6-O-demethyl-5-deoxybostrycoidin anthrone (4) and purpurfusarin (5). The novel dimeric bostrycoidin purpurfusarin (5) was found to inhibit the growth of Candida albicans with an IC50 of 8.0 +/− 1.9 μM. The results show that Fusarium species with black perithecia have a previously undescribed form of 5-deoxybostrycoidin based melanin in their fruiting bodies.
Forfattere
Erik Lysøe Rasmus J.N. Frandsen Hege Divon Valeria Terzi Luigi Orrù Antonella Lamontanara Anna-Karin Kolseth Kristian F. Nielsen Ulf ThraneSammendrag
Fusarium langsethiae is a widespread pathogen of small grain cereals, causing problems with T-2 and HT-2 toxin contamination in grains every year. In an effort to better understand the biology of this fungus, we present a draft genome sequence of F. langsethiae Fl201059 isolated from oats in Norway. The assembly was fragmented, but reveals a genome of approximately 37.5 Mb, with a GC content around 48%, and 12,232 predicted protein-coding genes. Focusing on secondary metabolism we identified candidate genes for 12 polyketide synthases, 13 non-ribosomal peptide synthetases, and 22 genes for terpene/isoprenoid biosynthesis. Some of these were found to be unique compared to sequence databases. The identified putative Tri5 cluster was highly syntenic to the cluster reported in F. sporotrichioides. Fusarium langsethiae Fl201059 produces a high number of secondary metabolites on Yeast Extract Sucrose (YES) agar medium, dominated by type A trichothecenes. Interestingly we found production of glucosylated HT-2 toxin (Glu-HT-2), previously suggested to be formed by the host plant and not by the fungus itself. In greenhouse inoculations of F. langsethiae Fl201059 on barley and oats, we detected the type A trichothecenes: neosolaniol, HT-2 toxin, T-2 toxin, Glu-HT-2 and numerous derivatives of these.
Sammendrag
Herbivory by insects and mites on physic nut (Jatropha curcas L.) seedlings was investigated and compared with irrigation in the semi-arid Sahelian Niger, utilizing a randomized complete block design experiment. Three water treatment protocols were applied and the types of damage were recorded. Less than 5% of the seedlings died during the 10-month trial period with sap suckers causing the most damage on the surviving plants. Plants with high production of biomass and leaf cover (foliage) were most strongly positively correlated with irrigation and were also the plants that endured the highest degree of herbivory. The low dieback may indicate that defence mechanisms counteract seedling herbivory and that drought-stressed plants invest more in their defence mechanism system than vital plants.
Forfattere
Hadush Tsehaye Beyene Abdelhameed Elameen Anne Marte Tronsmo Leif Sundheim Arne Tronsmo Dereje Assefa May Bente BrurbergSammendrag
Amplified fragment length polymorphism (AFLP) was used to study the genetic variation among 80 F. verticillioides isolates from kernels of Ethiopian maize, collected from 20 different maize growing areas in four geographic regions. A total of 213 polymorphic fragments were obtained using six EcoRI/MseI primer combinations. Analysis of the data based on all 213 polymorphic AFLP fragments revealed high level of genetic variation in the F. verticillioides entities in Ethiopia. About 58% of the fragments generated were polymorphic. The genetic similarity among F. verticillioides isolates varied from 46% to 94% with a mean Dice similarity of 73%. Unweighted Pair Group Method with Arithmetic Average (UPGMA) analysis revealed two main groups and four subgroups. The principal coordinate analysis (PCO) also displayed two main groups that agreed with the results of UPGMA analysis, and there was no clear pattern of clustering of isolates according to geographic origin. Analysis of molecular variance: (AMOVA) showed that only 1.5% of the total genetic variation was between geographic regions, while 98.5% was among isolates from the same geographic regions of Ethiopia. Eighty distinct haplotypes were recognized among the 80 isolates analyzed. Hence, breeding efforts should concentrate on quantitative resistance that is effective against all genotypes of the pathogen.
Forfattere
Eivind Vangdal Alena Gibalova Jorunn Børve Iren Knutsen Mojca Korošec Rajko Vidrih Per Gustav Anders LeufvénSammendrag
Aroma is an important quality factor in fruit, and it is important to know the effect of new orchard management practices on fruit aroma. Fruit growers are using more foliar fertilizers to achieve the optimum mineral status in fruit. In this work the effects of adding extra nitrogen, calcium and both nitrogen and calcium to apple trees in the fruit cell division phase were studied. Even though the given nitrogen and calcium did not give significantly higher content of N and Ca in the treated fruits, differences in the contents of some aroma compounds were found. Nitrogen treated trees gave apples with more hexanal, a compound known in unripe ("green, grassy") apples. When both calcium and nitrogen were applied, the negative effect of nitrogen on aroma compounds was less pronounced. The aroma of these fruits was more similar to the controls. Using multivariate statistical analyses, the grouping of the different treatments during storage was confirmed. Foliar fertilization with nitrogen and calcium during the cell division phase had a significant effect on the amount of aroma compounds in apples at harvest and during storage.
Forfattere
Aruppillai Suthaparan Knut Asbjørn Solhaug Nils Bjugstad Hans Ragnar Gislerød David M. Gadoury Arne StensvandSammendrag
Disease-suppressive effects of nighttime applications of ultraviolet-B (UV-B) were investigated at two irradiance levels (1.6 or 0.8 W/m2) in strawberry and rosemary plants inoculated with Podosphaera aphanis or Golovinomyces biocellatus, respectively. Plants were exposed to each irradiance level every third night for either 9 or 18 min, every night for either 3 or 6 min, or three times every night for either 1 or 2 min. Thus, over time, all plants received the same cumulative dose of UV-B, and severity of powdery mildew was reduced by 90 to 99% compared with untreated controls in both crops. Use of polished aluminum lamp reflectors and UV-B reflective surfaces on greenhouse benches significantly increased treatment efficacy. An automated apparatus consisting of an adjustable boom with directed airflow was used to move UV-B lamps over greenhouse benches at 25 or 50 cm/min. Directed airflow moved leaves on the subtending plants to better expose upper and lower surfaces to UV-B but directed airflow actually decreased the efficacy of UV-B treatments, possibly by dispersing conidia from lesions before they were exposed to a lethal dose of UV-B. Results indicate broad applicability of nighttime applications of UV-B to suppress powdery mildews, and that cumulative UV-B dose is an overriding factor determining efficacy. Finally, enhanced suppression on shaded or obscured tissues is more likely to be affected by reflective bench surfaces than through attempts to physically manipulate the foliage.
Forfattere
Mari Mette Tollefsrud Tor Myking Jørn Henrik Sønstebø Vaidotas Lygis Ari Hietala Myriam HeuertzSammendrag
During post glacial colonization, loss of genetic diversity due to leading edge effects may be attenuated in forest trees because of their prolonged juvenile phase, allowing many migrants to reach the colonizing front before populations become reproductive. The northern range margins of temperate tree taxa in Europe are particularly suitable to study the genetic processes that follow colonization because they have been little affected by northern refugia. Here we examined how post glacial range dynamics have shaped the genetic structure of common ash (Fraxinus excelsior L.) in its northern range compared to its central range in Europe. We used four chloroplast and six nuclear microsatellites to screen 42 populations (1099 trees), half of which corresponded to newly sampled populations in the northern range and half of which represented reference populations from the central range obtained from previously studies. We found that northern range populations of common ash have the same chloroplast haplotypes as south-eastern European populations, suggesting that colonization of the northern range took place along a single migration route, a result confirmed by the structure at the nuclear microsatellites. Along this route, diversity strongly decreased only in the northern range, concomitantly with increasing population differentiation and complex population substructures, a pattern consistent with a leading edge colonization model. Our study highlights that while diversity is maintained in the central range of common ash due to broad colonizing fronts and high levels of gene flow, it profoundly decreases in the northern range, where colonization was unidirectional and probably involved repeated founder events and population fluctuations. Currently, common ash is threatened by ash dieback, and our results on northern populations will be valuable for developing gene conservation strategies.
Sammendrag
Nonylphenols (NP) are a group of alkylphenols, formed upon degradation of nonylphenol ethoxylates such as nonylphenol monoethoxylate (NP1EO) or nonylphenol diethoxylate (NP2EO), which have been broadly used as non-ionic surfactants. Both NP and their ethoxylates are often present in the sewage, despite being banned and substituted by less toxic alcohol ethoxylates in many countries. There is a number of degradation studies of nonylphenol in the soil environment, but there is a lack of understanding on how plants and soil organisms such as earthworms can affect the degradation. In our study, we investigated the degradation of 4-nonylphenol (4-NP) in a mineral field soil in the presence of barley (Hordeum vulgare) and earthworms (Aporrectodea caliginosa). Soil was spiked with 4-NP at a concentration of 12.5 mg kg-1 d.w. soil. Results showed that the degradation of 4-NP in soil was rapid during the 28 days after spiking, with remaining concentration of 0.397 mg kg-1 d.w. soil on day 28. Degradation was much slower between days 28 and 120, with a remaining concentration of 0.214 mg kg-1 d.w. soil on day 120. No significant difference in the degradation of 4-NP in the presence of either plants or worms was observed, but sampling after 28 days of exposure revealed transfer of 4-NP to worms (worm tissue concentration = 0.79 μg g-1), which increased with time (1.66 μg g-1 after 120 d). The calculated transfer factor after 28 (TF28) and 120 days (TF120) was 0.07 and 0.13 respectively. No toxicity or accumulation in plants was observed at the concentration tested herein. Concentration of 4-NP in the rhizosphere was not statistically different from that in the bulk soil.
Sammendrag
Shelf life of plum is limited by several factors, including development of fungal decay. In either one or two seasons, European plum cultivars were exposed to different applications of calcium or fungicide before harvest or left unsprayed. On the experimental trees, the yield was harvested as commercial practice, giving a sample of fruit with a range in maturity acceptable for sale. The yield was divided into two groups, less and more ripened fruit. Fruit samples from each group were stored for 10-14 days at 4°C followed by a simulated shelf life period of 2-3 days at 20°C. Fruit quality was assessed at harvest and after storage. Number of fruit with fungal decay was counted at the end of storage and after simulated shelf life. At harvest, the more ripened fruit had higher weight, soluble solids content, background and cover colour, and lower firmness in most of the experiments. Fruit from trees sprayed six times with calcium had higher weight in first year, but not in second, was less ripen as measured by colour and firmness on some cultivars, but not on others. Time of fungicide application had no effect on fruit quality at harvest. Differences in fruit quality at harvest were most often similar after storage. Fruit grouped as more mature at harvest developed more fungal decay after simulated shelf life than less mature fruit in five of eight experiments. In one out of six experiments calcium applications reduced development of postharvest fungal decay. Fungicide applications had no effect on postharvest fungal decay in either of four experiments. The present results indicate that the ripening degree of plum fruit is more important for development of fungal decay than preharvest applications of calcium or fungicides
Sammendrag
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