Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2024
Authors
Peter Maenhout Claudia Di Bene Maria Luz Cayuela Eugenio Diaz-Pines Anton Govednik Frida Keuper Sara Mavsar Rok Mihelic Adam O'Toole Ana Schwarzmann Marjetka Suhadolc Alina Syp Elena ValkamaAbstract
No abstract has been registered
Authors
Jose Climent Ricardo Alía Katri Karkkainen Catherine Bastien Marta Benito-Garzon Laurent Bouffier Giovanbattista De Dato Sylvain Delzon Arnaud Dowkiw Margarita Elvira-Recuenco Delphine Grivet Santiago C. González-Martínez Haleh Hayatgheibi Sonja Kujala Jean-Charles Leplé Ruth C. Martín-Sanz Marina de Miguel M. Cristina Monteverdi Sven Mutke Christophe Plomion José Alberto Ramírez-Valiente Leopoldo Sanchez Aida Solé-Medina Jean-Paul Soularue Arne Steffenrem Angela Teani Johan Westin Richard Whittet Harry Wu Rafael Zas Stephen CaversAbstract
Purpose of Review In this review, we synthesise current knowledge on trade-offs among traits in key fitness dimensions and identify major research gaps with the intention of laying the groundwork for a rapid advance in tree breeding for multiple objectives as a key contribution to the sustainability of planted forests in the future. Recent Findings Trade-offs among growth, reproduction, defence, stress tolerance and product quality predicted theoretically have been reported experimentally in many breeding programmes. Among these trade-offs, the genetic linkage between resistance against biotic threats and growth (or other relevant traits) is particularly critical for the current and future management of forest genetic resources. Maintaining tree growth and wood quality in the novel environments of the future requires the assessment of genetic correlations of target traits with phenology, closely linked to survival to temperature extremes. Improving our current knowledge on the genetic trade-offs of drought tolerance as a breeding objective in forest trees obligates a more precise definition of both the specific traits and the experimental conditions. Published evidence suggests that common target traits in breeding programmes may trade-off with reproductive success and fire-adaptation, and the simultaneous improvement of growth and wood quality traits still remains as a constraint in traditional tree breeding. Summary Changing environments combined with pests and diseases are challenging plantation forestry worldwide, which implies an urgent need to develop new improvement strategies to build the resilience of forestry for our future environments. It is essential to have a better understanding of how traits interact, especially those important for production, climate and biotic threat resilience, but much of the information is still missing. Since many key trade-offs are affected by the environment, we need new studies under novel environments to forecast levels of multi-trait integration in breeding populations.
Authors
João Neiva Jorge Manuel Ferreira de Assis Eliza Fragkopoulou Gareth A. Pearson Peter T. Raimondi Laura Anderson Dorte Krause-Jensen Núria Marbà Andrew Want Olga Selivanova Masahiro Nakaoka W. Stewart Grant Brenda Konar Michael Roleda Mikael K. Sejr Cristina Paulino Ester A. SerrãoAbstract
Amphiboreal taxa are often composed of vicariant phylogroups and species complexes whose divergence and phylogeographic affinities reflect a shared history of chronic isolation and episodic trans-Arctic dispersal. Ecological filters and shifting selective pressures may also promote selective sweeps, niche shifts and ecological speciation during colonization, but these are seldom considered at biogeographical scales. Here we integrate genetic data and Ecologic Niche Models (ENMs) to investigate the historical biogeography and cohesion of the polymorphic rockweed Fucus distichus throughout its immense amphiboreal range, focusing on trans-Arctic asymmetries, glacial/interglacial dynamics, and integrity of sympatric eco-morphotypes. Populations were sampled throughout the Pacific and the Atlantic, from southern rear-edges to the high-Arctic. They were genotyped for seven microsatellites and an mtDNA spacer, and genetic diversity and structure were assessed from global to local scales. ENMs were used to compare niche divergence and magnitude of post-glacial range shifts in Pacific versus Atlantic sub-ranges. Haplotypic and genotypic data revealed distinct and seemingly isolated Pacific vs Arctic/Atlantic gene-pools, with finer-scale regional sub-structuring pervasive in the Pacific. MtDNA diversity was highly structured and overwhelmingly concentrated in the Pacific. Regionally, Alaska showed the highest intra-population diversity but the lowest levels of endemism. Some sympatric/parapatric ecotypes exhibited distinct genotypic/haplotypic compositions. Strikingly, niche models revealed higher Pacific tolerance to maximum temperatures and predicted a much more consolidated presence in the NE Atlantic. Glacial and modern ranges overlapped extensively in the Pacific, whereas the modern Atlantic range was largely glaciated or emerged during the Last Glacial Maximum. Higher genetic and ecogeographic diversity supports a primary Pacific diversification and secondary Atlantic colonization, also likely reflecting the much larger and more stable climatic refugia in the Pacific. The relic distribution and reduced ecological/morphological plasticity in the NE Atlantic are hypothesized to reflect functional trans-Arctic bottlenecks, recent colonization or competition with congeners. Within the Pacific, Alaska showed signatures of a post-glacial melting pot of eastern and southern populations. Genetic/ecotypic variation was generally not sufficiently discontinuous or consistent to justify recognizing multiple taxonomic entities, but support a separate species in the eastern Pacific, at the southern rear-edge. We predict that layered patterns of phylogeographic structure, incipient speciation and niche differences might be common among widespread low-dispersal amphiboreal taxa.
Abstract
Phytophthora cactorum is a plant pathogenic oomycete that causes crown rot in strawberry leading to significant economic losses every year. To invade the host, P. cactorum secretes an arsenal of effectors that can manipulate host physiology and impair its defense system promoting infection. A transcriptome analysis was conducted on a susceptible wild strawberry genotype (Fragaria vesca) 48 hours post inoculation with P. cactorum to identify effectors expressed during the early infection stage. The analysis revealed 4,668 P. cactorum genes expressed during infection of F. vesca. A total of 539 secreted proteins encoded by transcripts were identified, including 120 carbohydrate-active enzymes, 40 RXLRs, 23 proteolytic enzymes, nine elicitins, seven cysteine rich proteins, seven necrosis inducing proteins and 216 hypothetical proteins with unknown function. Twenty of the 40 RXLR effector candidates were transiently expressed in Nicotiana benthamiana using agroinfiltration and five previously unreported RXLR effector genes (Pc741, Pc8318, Pc10890, Pc20813, and Pc22290) triggered cell death when transiently expressed. The identified cell death inducing RXLR effectors showed 31–66% identity to known RXLR effectors in different Phytophthora species having roles in pathogenicity including both activation and suppression of defense response in the host. Furthermore, homology analysis revealed that these cell death inducing RXLR effectors were highly conserved (82 - 100% identity) across 23 different strains of P. cactorum originating from apple or strawberry.
Authors
Shelemia Nyamuryekung'eAbstract
On the Ground: -Precision livestock management through sensor technology using the Internet of Things offers enhanced surveillance and monitoring of the ranching operations. -At the ranch scale, the integration of sensor technology, including on-animal sensors, environmental monitoring equipment, and remote sensing can shift livestock operations from a solely reactive, traditional, knowledge-based approach toward a proactive, data-driven, decision-making process. -Leveraging data from sensors at the ranch scale can address logistical challenges and create efficiency in decision-making processes concerning resource management.
Abstract
No abstract has been registered
Abstract
No abstract has been registered
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No abstract has been registered
Abstract
Recurrent climate-driven disturbances impact on the health of European forests that reacted with increased tree dieback and mortality over the course of the last four decades. There is therefore large interest in predicting and understanding the fate and survival of forests under climate change. Forest conditions are monitored within the pan-European ICP Forests programme (UN-ECE International Co-operative Programme on Assessment and Monitoring of Air Pollution Effects on Forests) since the 1980s, with tree crown defoliation being the most widely used parameter. Defoliation is not a cause-specific indicator of tree health and vitality, and there is a need to connect defoliation levels with the physiological functioning of trees. The physiological responses connected to tree crown defoliation are species-specific and concern, among others, water relations, photosynthesis and carbon metabolism, growth, and mineral nutrients of leaves. The indicators to measure physiological variables in forest monitoring programs must be easy to apply in the field with current state-of-the-art technologies, be replicable, inexpensive, time efficient and regulated by ad hoc protocols. The ultimate purpose is to provide data to feed process-based models to predict mortality and threats in forests due to climate change. This study reviews the problems and perspectives connected to the realization of a systematic assessment of physiological variables and proposes a set of indicators suitable for future application in forest monitoring programs.
Authors
Sunil Mundra Dinesh Sanka Loganathachetti Håvard Kauserud Anna Maria Fiore-Donno Tonje Økland Jørn-Frode Nordbakken O. Janne KjønaasAbstract
Large-scale replacements of native birch with spruce have been carried out in Western Norway for economic reasons. This tree species shift potentially affects biotic components such as the eucaryome, consisting of microscopic animals (Metazoa), protists and fungi, which are key players in the functioning of forest ecosystem. The impact on the belowground eukaryome and its interactions with vegetation and soil properties is not well assessed. We examined the impact of replacing native birch with Norway spruce plantations on the eukaryome of the boreal forest floor in Western Norway using 18S rDNA metabarcoding. The tree species shift from birch to spruce had significant impacts on the eukaryome at both taxonomic (Metazoa) and functional categories (phagotrophs, phototrophs, parasites and osmotrophs). The distinct differences in eukaryome communities were related to changes in understorey vegetation biomass and soil chemistry following the tree species shift. This had a negative effect on eukaryome richness, particularly affecting phagotrophs and parasites, while the opposite was observed for osmotroph richness. Our results indicated that the spruce plantations altered the eukaryome communities and their food-web patterns compared to what was found in the native birch forest soil. This information should be taken into consideration in forest management planning.