Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2020
Forfattere
Baiba Krivmane Ilze Šņepste Vilnis Šķipars Igor A. Yakovlev Carl Gunnar Fossdal Adam Vivian-Smith Dainis RuņģisSammendrag
MicroRNAs (miRNAs) are non-protein coding RNAs of ~20–24 nucleotides in length that play an important role in many biological and metabolic processes, including the regulation of gene expression, plant growth and developmental processes, as well as responses to stress and pathogens. The aim of this study was to identify and characterize novel and conserved microRNAs expressed in methyl jasmonate-treated Scots pine needles. In addition, potential precursor sequences and target genes of the identified miRNAs were determined by alignment to the Pinus unigene set. Potential precursor sequences were identified using the miRAtool, conserved miRNA precursors were also tested for the ability to form the required stem-loop structure, and the minimal folding free energy indexes were calculated. By comparison with miRBase, 4975 annotated sequences were identified and assigned to 173 miRNA groups, belonging to a total of 60 conserved miRNA families. A total of 1029 potential novel miRNAs, grouped into 34 families were found, and 46 predicted precursor sequences were identified. A total of 136 potential target genes targeted by 28 families were identified. The majority of previously reported highly conserved plant miRNAs were identified in this study, as well as some conserved miRNAs previously reported to be monocot specific. No conserved dicot-specific miRNAs were identified. A number of potential gymnosperm or conifer specific miRNAs were found, shared among a range of conifer species.
Sammendrag
Det er ikke registrert sammendrag
Forfattere
Olalla Díaz-Yáñez Blas Mola-Yudego Volkmar Timmermann Mari Mette Tollefsrud Ari Hietala Jonas OlivaSammendrag
Determining the impacts of invasive pathogens on tree mortality and growth is a difficult task, in particular in the case of species occurring naturally at low frequencies in mixed stands. In this study, we quantify such effects by comparing national forest inventory data collected before and after pathogen invasion. In Norway, Fraxinus excelsior is a minor species representing less than 1% of the trees in the forests and being attacked by the invasive pathogen Hymenoscyphus fraxineus since 2006. By studying deviations between inventories, we estimated a 74% higher-than-expected average ash mortality and a 13% slower-than-expected growth of the surviving ash trees, indicating a lack of compensation by the remaining ash. We could confidently assign mortality and growth losses to ash dieback as no mortality or growth shifts were observed for co-occurring tree species in the same plots. The mortality comparisons also show regional patterns with higher mortality in areas with the longest disease history in Norway. Considering that ash is currently mostly growing in mixed forests and that no signs of compensation were observed by the surviving ash trees, a significant habitat loss and niche replacement could be anticipated in the mid-term.
Forfattere
Cornelya Klutsch Paul Eric Aspholm Natalia Polikarpova Olga Veisblium Tor-Arne Bjørn Anne Wikan Victoria Gonzalez Snorre HagenSammendrag
Citizen science can facilitate in‐depth learning for pupils and students, contribute to scientific research, and permit civic participation. Here, we describe the development of the transnational school‐based citizen science project Phenology of the North Calotte. Its primary goal is to introduce pupils (age 12–15; grades 7–10) in northern Norway, Russia, and Finland to the local and global challenges of climate change resulting in life cycle changes at different trophic and ecosystem levels in their backyards. Partnerships between regional scientists and staff from NIBIO Svanhovd, State nature reserves, national parks, and teachers and pupils from regional schools aim to engage pupils in project‐based learning. The project uses standardized protocols, translated into the different languages of participating schools. The phenological observations are centered around documenting clearly defined life cycle phases (e.g., first appearance of species, flowering, ripening, leaf yellowing, snow fall, and melt). The observations are collected either on paper and are subsequently submitted manually to an open‐source online database or submitted directly via a newly developed mobile app. In the long term, the database is anticipated to contribute to research studying changes in phenology at different trophic levels. In principle, guided school‐based citizen science projects have the potential to contribute to increased environmental awareness and education and thereby to transformative learning at the societal level while contributing to scientific progress of understudied biomes, like the northern taiga and (sub)arctic tundra. However, differences in school systems and funding insecurity for some schools have been major prohibiting factors for long‐term retention of pupils/schools in the program. Project‐based and multidisciplinary learning, although pedagogically desired, has been partially difficult to implement in participating schools, pointing to the need of structural changes in national school curricula and funding schemes as well as continuous offers for training and networking for teachers.
Forfattere
Pål Melbye Trygve S. Aamlid Karin Juul Hesselsøe Pia Heltoft Thomsen Wendy Marie Waalen Sigridur Dalmannsdottir Tatsiana Espevig Marit Almvik Monica Fongen Einar Gestur JonassonSammendrag
Det er ikke registrert sammendrag
Forfattere
Simo Maduna Adam Vivian-Smith Ólöf Dóra Bartels Jónsdóttir Albert Imsland Cornelya Klutsch Tommi Nyman Hans Geir Eiken Snorre HagenSammendrag
The lumpfish Cyclopterus lumpus is commercially exploited in numerous areas of its range in the North Atlantic Ocean, and is important in salmonid aquaculture as a biological agent for controlling sea lice. Despite the economic importance, few genetic resources for downstream applications, such as linkage mapping, parentage analysis, marker-assisted selection (MAS), quantitative trait loci (QTL) analysis, and assessing adaptive genetic diversity are currently available for the species. Here, we identify both genome- and transcriptome-derived microsatellites loci from C. lumpus to facilitate such applications. Across 2,346 genomic contigs, we detected a total of 3,067 microsatellite loci, of which 723 were the most suitable ones for primer design. From 116,555 transcriptomic unigenes, we identified a total of 231,556 microsatellite loci, which may indicate a high coverage of the available STRs. Out of these, primer pairs could only be designed for 6,203 loci. Dinucleotide repeats accounted for 89 percent and 52 percent of the genome- and transcriptome-derived microsatellites, respectively. The genetic composition of the dominant repeat motif types showed differences from other investigated fish species. In the genome-derived microsatellites AC/GT (67.8 percent), followed by AG/CT (15.1 percent) and AT/AT (5.6 percent) were the major motifs. Transcriptome-derived microsatellites showed also most dominantly the AC/GT repeat motif (33 percent), followed by A/T (26.6 percent) and AG/CT (11 percent). Functional annotation of microsatellite-containing transcriptomic sequences showed that the majority of the expressed sequence tags encode proteins involved in cellular and metabolic processes, binding activity and catalytic reactions. Importantly, STRs linked to genes involved in immune system process, growth, locomotion and reproduction were discovered in the present study. The extensive genomic marker information reported here will facilitate molecular ecology studies, conservation initiatives and will benefit many aspects of the breeding programmes of C. lumpus.
Forfattere
Melissa Magerøy Samuel W. Wilkinson Torstein Tengs Hugh Cross Marit Almvik Pierre Petriacq Adam Vivian-Smith Tao Zhao Carl Gunnar Fossdal Paal KrokeneSammendrag
In response to various stimuli, plants acquire resistance against pests and/or pathogens. Such acquired or induced resistance allows plants to rapidly adapt to their environment. Spraying the bark of mature Norway spruce (Picea abies) trees with the phytohormone methyl jasmonate (MeJA) enhances resistance to tree‐killing bark beetles and their associated phytopathogenic fungi. Analysis of spruce chemical defenses and beetle colonization success suggests that MeJA treatment both directly induces immune responses and primes inducible defenses for a faster and stronger response to subsequent beetle attack. We used metabolite and transcriptome profiling to explore the mechanisms underlying MeJA‐induced resistance in Norway spruce. We demonstrated that MeJA treatment caused substantial changes in the bark transcriptional response to a triggering stress (mechanical wounding). Profiling of mRNA expression showed a suite of spruce inducible defenses are primed following MeJA treatment. Although monoterpenes and diterpene resin acids increased more rapidly after wounding in MeJA‐treated than control bark, expression of their biosynthesis genes did not. We suggest that priming of inducible defenses is part of a complex mixture of defense responses that underpins the increased resistance against bark beetle colonization observed in Norway spruce. This study provides the most detailed insights yet into the mechanisms underlying induced resistance in a long‐lived gymnosperm.
Sammendrag
I denne rapporten presenteres resultater fra den systematiske overvåkingen av karplanter som er en del av det nasjonale programmet «Tilstandsovervåking og resultatkontroll i jordbrukets kulturlandskap» (3Q). Vi identifiserte fire plantesamfunn: Naturbeitemark/utmark, moderat gjødslet beitemark/fukteng, gjengroende jordbruksareal, kulturbeiter/forstyrret mark. For alle plantesamfunnene bortsett fra kulturbeiter/forstyrret mark fant vi en gjengroingstendens med økt innslag av skogsarter eller sene suksesjonsarter og hvor engartene forsvinner. I gruppen kulturbeiter/forstyrret mark har vi derimot registrert en mer intensiv bruk av arealene. Viktige arter for humler og bier går tilbake i alle de fire plantesamfunnene vi har identifisert. Andelen av truede arter og fremmede arter med høy økologisk risiko er relativt lav i rutene. Selv om tilbakegangen er negativ for mange arter knyttet til naturbeitemarker finnes det forvaltningstiltak som kan bedre forholdene for flere av artene som er i tilbakegang.
Sammendrag
Det er ikke registrert sammendrag
Sammendrag
Ornamental jewelweed (Impatiens glandulifera Royle) is an alien invasive plant in Europe. This annual plant often grows in riparian habitats where herbicides are prohibited. Several studies have reported the negative effect on ecosystem and ecosystem services by this species. However, limited research is published on control measures and the aim of our study was to explore use of hot water and cutting to control I. glandulifera. A lab experiment showed that the lethal water temperature for seed was between 45 and 50 C. In a pot experiment with seeds in soil, emergence of I. glandulifera was reduced by 78% and 93% compared with the untreated control with volumes of hot water (80 C) of 7.2 and 14.5 L m−2, respectively. When treatments were conducted on relatively tall plants (almost 60 cm) in late June, hot water gave significantly better control than cutting. Compared with an untreated control, I. glandulifera cover was reduced by 97% and 79% after hot water and cutting, respectively. Application of hot water to smaller (<40 cm) and less developed plants (BBCH 12–13) in early June and cutting of plants with visible flower buds (mid-July) led to no significant difference in cover. Compared with an untreated control, I. glandulifera cover was reduced by 99% (cut below first node) and 91% (hot water and cut above first node). When relatively tall plants (almost 60 cm) were treated, hot water use was high (31.1 L m−2) and required twice as many work hours (4.8 min m−2) as cutting (2.4 min m−2). When smaller plants (<40 cm) were targeted, work hours and hot water use were reduced to 2.1 min m−2 and 13.7 L m−2, respectively.