Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2021
Forfattere
Natalia Fraija-Fernández Andrea Waeschenbach Andrew G. Briscoe Suzanne Hocking Roman Kuchta Tommi Nyman D. Timothy J. LittlewoodSammendrag
Broad tapeworms (Diphyllobothriidea) are parasites whose adults are capable of infecting a wide range of freshwater, marine and terrestrial tetrapods including humans. Previous works examining the evolution of habitat and host use in this group have been hampered by the lack of a well-resolved phylogeny. In order to produce a robust phylogenetic framework for diphyllobothriideans, we sequenced the complete mitochondrial genome of 13 representatives, carefully chosen to cover the major clades, and two outgroup species representing the Spathebothriidea and Haplobothriidea. In addition, complementary data from the nuclear ribosomal operon was sequenced for 10 representative taxa. Mitogenomes and ssrDNA and lsrDNA were used towards elucidating the phylogenetic framework for the Diphyllobothriidea. The Cephalochlamydidae is confirmed as the earliest diverging diphyllobothriidean lineage, and Solenophoridae and Diphyllobothriidae are sister groups. We infer a probable freshwater origin of the diphyllobothriideans. The ancestral condition for life cycle complexity could not be unambiguously resolved. However, we infer exclusive use of a three-host life cycle following the origin of the Solenophoridae + Diphyllobothriidae. Regarding definitive host use, although we infer reptiles as the most likely ancestral condition, this result should be revisited with a more densely sampled phylogeny in future studies. Freshwater habitat is used by the early diverging lineages within the Solenophoridae + Diphyllobothriidae clade. For the latter, habitat use shifts between freshwater and marine environments, and definitive host use includes marine and terrestrial mammals and birds. We use mitochondrial genomes to distinguish Schistocephalus species occurring in different species of sticklebacks and demonstrate conspecificity of Ligula cf. intestinalis specimens collected from two Fennoscandian ringed seal subspecies.
Sammendrag
Aim It is generally assumed that the degree of resource specialization in herbivorous insects increases towards lower latitudes. However, latitudinal patterns in herbivore diet breadth at large spatial scales remain poorly understood. In this work, we investigated the drivers of latitudinal variation in lepidopteran ‘fundamental’ resource specialization, which we defined as the host breadth when not limited by interspecific interactions at the same trophic level. Location The Japanese archipelago (22°N–45°N), including hemiboreal, temperate and subtropical zones. Taxon Herbivorous butterflies. Methods Species-specific fundamental host breadth was calculated based on pooled host-use records. We investigated the latitudinal pattern and significant drivers of the degree of specialization in regional species pools at a 10-km grid level. As potential drivers, we focused on geography, current climate and diversity and body size of butterflies. Through Bayesian structural equation modelling, we investigated the complicated relationships between these variables and community-level resource specialization represented by three different indices of host breadth. Results We found that the fundamental resource specialization of butterfly communities increases towards higher latitudes. This pattern is contrary to the presumed general trend found in studies based on realized resource specialization within local communities. We found that the observed pattern is driven mainly by factors related to climate, butterfly diversity and body size in each community. Above all, annual mean temperature most strongly drove community-level fundamental host breadth of herbivorous butterflies. Main conclusions Our findings suggest that the fundamental resource specialization may show different latitudinal patterns from the conventional prediction based on knowledge of realized resource specialization. Our results emphasize the importance of the current climate as a major factor regulating butterfly morphology and fundamental host breadth, regardless of whether the impact is direct or indirect.
Forfattere
Paula Thitz Ann E. Hagerman Tendry R. Randriamanana Virpi Virjamo Minna Kosonen Mika Lännenpää Tommi Nyman Lauri Mehtätalo Sari Kontunen-Soppela Riitta Julkunen-TiittoSammendrag
Det er ikke registrert sammendrag
Sammendrag
Hymenoptera is a hyperdiverse insect order represented by over 153,000 different species. As many hymenopteran species perform various crucial roles for our environments, such as pollination, herbivory, and parasitism, they are of high economic and ecological importance. There are 99 hymenopteran genomes in the NCBI database, yet only five are representative of the paraphyletic suborder Symphyta (sawflies, woodwasps, and horntails), while the rest represent the suborder Apocrita (bees, wasps, and ants). Here, using a combination of 10X Genomics linked-read sequencing, Oxford Nanopore long-read technology, and Illumina short-read data, we assembled the genomes of two willow-galling sawflies (Hymenoptera: Tenthredinidae: Nematinae: Euurina): the bud-galling species Euura lappo and the leaf-galling species Eupontania aestiva. The final assembly for E. lappo is 259.85 Mbp in size, with a contig N50 of 209.0 kbp and a BUSCO score of 93.5%. The E. aestiva genome is 222.23 Mbp in size, with a contig N50 of 49.7 kbp and a 90.2% complete BUSCO score. De novo annotation of repetitive elements showed that 27.45% of the genome was composed of repetitive elements in E. lappo and 16.89% in E. aestiva, which is a marked increase compared to previously published hymenopteran genomes. The genomes presented here provide a resource for inferring phylogenetic relationships among basal hymenopterans, comparative studies on host-related genomic adaptation in plant-feeding insects, and research on the mechanisms of plant manipulation by gall-inducing insects.
Sammendrag
While free-living herbivorous insects are thought to harbor microbial communities composed of transient bacteria derived from their diet, recent studies indicate that insects that induce galls on plants may be involved in more intimate host–microbe relationships. We used 16S rDNA metabarcoding to survey larval microbiomes of 20 nematine sawfly species that induce bud or leaf galls on 13 Salix species. The 391 amplicon sequence variants (ASVs) detected represented 69 bacterial genera in six phyla. Multi-variate statistical analyses showed that the structure of larval microbiomes is influenced by willow host species as well as by gall type. Nevertheless, a “core” microbiome composed of 58 ASVs is shared widely across the focal galler species. Within the core community, the presence of many abundant, related ASVs representing multiple distantly related bacterial taxa is reflected as a statistically significant effect of bacterial phylogeny on galler–microbe associations. Members of the core community have a variety of inferred functions, including degradation of phenolic compounds, nutrient supplementation, and production of plant hormones. Hence, our results support suggestions of intimate and diverse interactions between galling insects and microbes and add to a growing body of evidence that microbes may play a role in the induction of insect galls on plants.
Sammendrag
While interspecific variation in microbiome composition can often be readily explained by factors such as host species identity, there is still limited knowledge of how microbiomes vary at scales lower than the species level (e.g., between individuals or populations). Here, we evaluated variation in microbiome composition of individual parasites among infrapopulations (i.e., populations of parasites of the same species living on a single host individual). To address this question, we used genome-resolved and shotgun metagenomic data of 17 infrapopulations (balanced design) of the permanent, bloodsucking seal louse Echinophthirius horridus sampled from individual Saimaa ringed seals Pusa hispida saimensis. Both genome-resolved and read-based metagenomic classification approaches consistently show that parasite infrapopulation identity is a significant factor that explains both qualitative and quantitative patterns of microbiome variation at the intraspecific level. This study contributes to the general understanding of the factors driving patterns of intraspecific variation in microbiome composition, especially of bloodsucking parasites, and has implications for understanding how well-known processes occurring at higher taxonomic levels, such as phylosymbiosis, might arise in these systems.
Sammendrag
Wildlife species living in proximity with humans often suffer from various anthropogenic factors. Here, we focus on the endangered Saimaa ringed seal (Pusa hispida saimensis), which lives in close connection with humans in Lake Saimaa, Finland. This unique endemic population has remained landlocked since the last glacial period, and it currently consists of only ~400 individuals. In this review, we summarize the current knowledge on the Saimaa ringed seal, identify the main risk factors and discuss the efficacy of conservation actions put in place to ensure its long-term survival. The main threats for this rare subspecies are bycatch mortality, habitat destruction and increasingly mild winters. Climate change, together with small population size and an extremely impoverished gene pool, forms a new severe threat. The main conservation actions and priorities for the Saimaa ringed seal are implementation of fishing closures, land-use planning, protected areas, and reduction of pup mortality. Novel innovations, such as provisioning of artificial nest structures, may become increasingly important in the future. Although the Saimaa ringed seal still faces the risk of extinction, the current positive trend in the number of seals shows that endangered wildlife populations can recover even in regions with considerable human inhabitation, when legislative protection is combined with intensive research, engagement of local inhabitants, and innovative conservation actions. Such multifaceted conservation approaches are needed in a world with a growing human population and a rapidly changing climate.
Sammendrag
På oppdrag fra Bane NOR har NIBIO overvåket vannkvalitet i resipienter som kan motta avrenning fra anleggsarbeider i forbindelse med utbygging av Follobanen. NIBIO har driftet opptil 10 målestasjoner utstyrt med multiparametersensorer for automatisk overvåking av vannkvalitet. I tillegg har det blitt tatt ut vannprøver ved opptil 15 stasjoner og utført biologiske undersøkelser ved opptil seks stasjoner. Overvåkingen har pågått i vannforekomster nedstrøms riggområdet på Åsland og i Alna i Oslo, i bekker sør for stasjonsområdet på Ski, langs anleggsområdet mellom Ski og Langhus, samt ved Sagdalsbekken i Langhus. Årsrapporten omfatter alle resultater samlet inn på disse stasjonene i 2020 og har blitt sammenlignet med tidligere resultater.
Forfattere
Yeqing Li Zhenxin Wang Zhuoliang Jiang Lu Feng Junting Pan Mingyu Zhu Chengjie Ma Zhangmu Jing Hao Jiang Hongjun Zhou Hui Sun Hongbin LiuSammendrag
This study evaluated the effects of bio-based carbon materials on methane production by anaerobic digestion. The results showed that biochar and hydrochar can promote cumulative methane yield by 15% to 29%. However, there was no statistical significance (p > 0.05) between hydrochar and biochar produced at different temperature on methane production. 16S rRNA gene sequencing and bioinformatics analysis showed that biochar and hydrochar enriched microorganism that might participate in direct interspecies electron transfer (DIET) such as Pseudomonadaceae, Bacillaceae, and Clostridiaceae. The the surface properties of the modified biochar were characterized with BET, Raman, FTIR and XPS. Bio-based carbon materials with uniform dispersion provided a stable environment for the DIET of microorganisms and electrons are transferred through aromatic functional groups on the surface of materials. This study reveals bio-based carbon materials surface properties on methane production in anaerobic digestion and provides a new approach to recycling spent coffee grounds.
Forfattere
Yeqing Li Yinjun Liu Ximeng Wang Sen Luo Dongfang Su Hao Jiang Hongjun Zhou Junting Pan Lu FengSammendrag
Syngas from pyrolysis/gasification process is a mixture of CO, CO2 and H2, which could be converted to CH4, so called syngas biomethanation. Its development is obstructed due to the low productivity and CO inhibition. The aim of this study was to demonstrate the feasibility of using syngas as the only carbon source containing high CO concentration (40%) for biomethanation. Lab-scale thermophilic bioreactor inoculated with anaerobic sludge was operated continuously for over 900 h and the shift of microbial structure were investigated. Results showed that thermophilic condition was suitable for syngas biomethanation and the microbes could adapt to high CO concentration. Higher processing capacity of 12.6 m3/m3/d was found and volumetric methane yield of 2.97 m3/m3/d was observed. These findings could strengthen the theoretical basis of syngas biomethanation and support its industrialization in the future.