Publikasjoner
NIBIOs ansatte publiserer flere hundre vitenskapelige artikler og forskningsrapporter hvert år. Her finner du referanser og lenker til publikasjoner og andre forsknings- og formidlingsaktiviteter. Samlingen oppdateres løpende med både nytt og historisk materiale. For mer informasjon om NIBIOs publikasjoner, besøk NIBIOs bibliotek.
2020
Forfattere
Boris B. Demenou Jérémy Migliore Myriam Heuertz Franck K. Monthe Dario Isidro Ojeda Alayon Jan J. Wieringa Gilles Dauby Laura Albreht Arthur Boom Olivier J. HardySammendrag
Paleo-environmental data show that the distribution of African rain forests was affected by Quaternary climate changes. In particular, the Dahomey Gap (DG) – a 200 km wide savanna corridor currently separating the West African and Central African rain forest blocks and containing relict rain forest fragments – was forested during the mid-Holocene and possibly during previous interglacial periods, whereas it was dominated by open vegetation (savanna) during glacial periods. Genetic signatures of past population fragmentation and demographic changes have been found in some African forest plant species using nuclear markers, but such events appear not to have been synchronous or shared across species. To better understand the colonization history of the DG by rain forest trees through seed dispersal, the plastid genomes of two widespread African forest legume trees, Anthonotha macrophylla and Distemonanthus benthamianus, were sequenced in 47 individuals for each species, providing unprecedented phylogenetic resolution of their maternal lineages (857 and 115 SNPs, respectively). Both species exhibit distinct lineages separating three regions: 1. Upper Guinea (UG, i.e. the West African forest block), 2. the area ranging from the DG to the Cameroon volcanic line (CVL), and 3. Lower Guinea (LG, the western part of the Central African forest block) where three lineages co-occur. In both species, the DG populations (including southern Nigeria west of Cross River) exhibit much lower genetic diversity than UG and LG populations, and their plastid lineages originate from the CVL, confirming the role of the CVL as an ancient forest refuge. Despite the similar phylogeographic structures displayed by A. macrophylla and D. benthamianus, molecular dating indicates very contrasting ages of lineage divergence (UG diverged from LG since c. 7 Ma and 0.7 Ma, respectively) and DG colonization (probably following the Mid Pleistocene Transition and the Last Glacial Maximum, respectively). The stability of forest refuge areas and repeated similar forest shrinking/expanding events during successive glacial periods might explain why similar phylogeographic patterns can be generated over contrasting timescales.
Forfattere
Manuel de la Estrella Sandra Cervantes Steven B. Janssens Félix Forest Olivier J. Hardy Dario Isidro Ojeda AlayonSammendrag
Aim: The Guineo‐Congolian region in Africa constitutes the second largest area of tropical rainforest (TRF) in the world. It covered an estimated 15–22 million km2 during the late Miocene (55–11 Ma) and it has experienced since a declining trend, currently reaching 3.4 million km2, associated with increasing aridification and the replacement of TRF by savanna habitats. Here, we examine whether rainforest area contraction led to a decrease in net diversification rates linked to increasing extinction, or if it is associated with increasing opportunities for allopatric or ecological speciation during periods of forest fragmentation. Location: Tropical Africa, Guineo‐Congolian region. Taxon: Anthonotha, Englerodendron, Berlinia clade (Leguminosae). Methods: We used a target enrichment approach combined with a complete data set representing all genera within the Berlinia clade. We combined phylogenomic, dating estimates, habitat reconstruction and diversification rate analyses to infer the effect of change in rainforest area coverage at two taxonomic levels: among genera, and within Anthonotha and Englerodendron. Results: We recovered fully resolved and well‐supported relationships among all genera and among species within the two genera. Most genera (87.5%) diverged before the Pleistocene, but Anthonotha and Englerodendron diversified recently, during the most recent cycles of forest contraction and expansion of the Pleistocene. Main conclusions: Our results suggest that the Berlinia clade displays an overall trend of accumulation of species over evolutionary time, suggesting the reduction in TRF area has not decreased net diversification rates. Most habitat shifts to savanna occurred in the Miocene, with no major habitat shifts during the most recent phases of forest expansion–contraction in the Pleistocene. Shifts in habitat from lowland forest to savanna did not trigger diversification rates, but habitat fragmentation might have increased diversification rates through allopatric speciation.
Forfattere
Erik J. M. Koenen Dario Isidro Ojeda Alayon Freek T. Bakker Jan J. Wieringa Catherine Kidner Olivier J. Hardy R. Toby Pennington Patrick S. Herendeen Anne Bruneau Colin E. HughesSammendrag
The consequences of the Cretaceous–Paleogene (K–Pg) boundary (KPB) mass extinction for the evolution of plant diversity remain poorly understood, even though evolutionary turnover of plant lineages at the KPB is central to understanding assembly of the Cenozoic biota. The apparent concentration of whole genome duplication (WGD) events around the KPB may have played a role in survival and subsequent diversification of plant lineages. To gain new insights into the origins of Cenozoic biodiversity, we examine the origin and early evolution of the globally diverse legume family (Leguminosae or Fabaceae). Legumes are ecologically (co-)dominant across many vegetation types, and the fossil record suggests that they rose to such prominence after the KPB in parallel with several well-studied animal clades including Placentalia and Neoaves. Furthermore, multiple WGD events are hypothesized to have occurred early in legume evolution. Using a recently inferred phylogenomic framework, we investigate the placement of WGDs during early legume evolution using gene tree reconciliation methods, gene count data and phylogenetic supernetwork reconstruction. Using 20 fossil calibrations we estimate a revised timeline of legume evolution based on 36 nuclear genes selected as informative and evolving in an approximately clock-like fashion. To establish the timing of WGDs we also date duplication nodes in gene trees. Results suggest either a pan-legume WGD event on the stem lineage of the family, or an allopolyploid event involving (some of) the earliest lineages within the crown group, with additional nested WGDs subtending subfamilies Papilionoideae and Detarioideae. Gene tree reconciliation methods that do not account for allopolyploidy may be misleading in inferring an earlier WGD event at the time of divergence of the two parental lineages of the polyploid, suggesting that the allopolyploid scenario is more likely. We show that the crown age of the legumes dates to the Maastrichtian or early Paleocene and that, apart from the Detarioideae WGD, paleopolyploidy occurred close to the KPB. We conclude that the early evolution of the legumes followed a complex history, in which multiple auto- and/or allopolyploidy events coincided with rapid diversification and in association with the mass extinction event at the KPB, ultimately underpinning the evolutionary success of the Leguminosae in the Cenozoic. [Allopolyploidy; Cretaceous–Paleogene (K–Pg) boundary; Fabaceae, Leguminosae; paleopolyploidy; phylogenomics; whole genome duplication events]
Forfattere
N.G. Hodgetts Lars Söderström T.L. Blockeel S. Caspari M.S. Ignatov N.A. Konstantinova N. Lockhart B. Papp C. Schröck M. Sim-Sim D. Bell N.E. Bell Hans Blom M.A. Bruggeman-Nannenga M. Brugués J. Enroth Kjell Ivar Flatberg R. Garilleti L. Hedenäs D.T. Holyoak V. Hugonnot I. Kariyawasam H. Köckinger J. Kučera F. Lara R.D. PorleySammendrag
Introduction. Following on from work on the European bryophyte Red List, the taxonomically and nomenclaturally updated spreadsheets used for that project have been expanded into a new checklist for the bryophytes of Europe. Methods. A steering group of ten European bryologists was convened, and over the course of a year, the spreadsheets were compared with previous European checklists, and all changes noted. Recent literature was searched extensively. A taxonomic system was agreed, and the advice and expertise of many European bryologists sought. Key results. A new European checklist of bryophytes, comprising hornworts, liverworts and mosses, is presented. Fifteen new combinations are proposed. Conclusions. This checklist provides a snapshot of the current European bryophyte flora in 2019. It will already be out-of-date on publication, and further research, particularly molecular work, can be expected to result in many more changes over the next few years.
Forfattere
L.T. Ellis Olga M. Afonina I.V. Czernyadjeva L.A. Konoreva A.D. Potemkin V.M. Kotkova M. Alataş Hans Blom M. Boiko R.A. Cabral S. Jimenez D. Dagnino C. Turcato L. Minuto P. Erzberger T. Ezer Olga Galanina N. Hodgetts M.S. Ignatov Elena A. Ignatova S.G. Kazanovsky T. Kiebacher H. Köckinger E.O. Korolkova J. Larraín A.I. Maksimov D. Maity A. Martins M. Sim-Sim F. Monteiro L. Catarino R. Medina M. Nobis Arkadiusz Nowak Ryszard Ochyra I. Parnikoza V. Ivanets V. Plášek M. Philippe P. Saha Md. N. Aziz A.V. Shkurko S. Ştefănuţ G.M. Suárez A. Uygur K. Erkul M. Wierzgoń A. GraulichSammendrag
Det er ikke registrert sammendrag
Forfattere
L. T. Ellis M. Kh. Alikhadzhiev R. S. Erzhapova Hans Blom H. Bednarek-Ochyra M. Burghart M. J. Cano I.V. Czernyadjeva E. Yu. Kuzmina A. D. Potemkin G. Ya. Doroshina D. Dagnino C. Turcato L. Minuto P. Drapela M. V. Dulin E. Fuertes A. Graulich Kristian Hassel Lars Hedenäs Tom Hellik Hofton Torbjørn Høitomt I. Jukonienė M. Kırmacı N. E. Koroleva Ł. Krajewski M. Kropik H. Kürschner E. V. Kushnevskaya J. Larraín M. Lebouvier A. I. Maksimov O. Yu. Pisarenko V. Plášek Z. Skoupá S. Yu. Popov V. E. Fedosov M. Puglisi A Stebel S. Ştefănut G. Vončina M. Wierzgoń S.-L. GuoSammendrag
Det er ikke registrert sammendrag
Sammendrag
Det er ikke registrert sammendrag
Forfattere
Erik Framstad Hans Blom Tor Erik Brandrud Annette Bär Line Johansen Siri Lie Olsen Odd Egil Stabbetorp Dag-Inge ØienSammendrag
Det er ikke registrert sammendrag
Sammendrag
Pythium species are ubiquitous organisms known to be pathogens to terrestrial plants and marine algae. While several Pythium species (hereafter, Pythium) are described as pathogens to marine red algae, little is known about the pathogenicity of Pythium on marine green algae. A strain of a Pythium was isolated from a taxonomically unresolved filamentous Ulva collected in an intertidal area of Oslo fjord. Its pathogenicity to a euryhaline Ulva intestinalis collected in the same area was subsequently tested under salinities of 0, 15, and 30 parts per thousand (ppt). The Pythium isolate readily infected U. intestinalis and decimated the filaments at 0 ppt. Mycelium survived on U. intestinalis filaments for at least 2 weeks at 15 and 30 ppt, but the infection did not progress. Sporulation was not observed in the infected algal filaments at any salinity. Conversely, Pythium sporulated on infected grass pieces at 0, 15, and 30 ppt. High salinity retarded sporulation, but did not prevent it. Our Pythium isolate produced filamentous non-inflated sporangia. The sexual stage was never observed and phylogenetic analysis using internal transcribed spacer suggest this isolate belongs to the clade B2. We conclude that the Pythium found in the Oslo fjord was a pathogen of U. intestinalis under low salinity.
Sammendrag
Skogen i Norge har et årlig netto opptak i underkant av 30 mill. tonn CO2. Størrelsen på opptaket påvirkes av forvaltningen av skogarealene, både gjennom endringer i totalarealet (avskoging og påskoging), og forvaltningen av de eksisterende skogarealene. I denne rapporten presenteres en første vurdering av syv klimatiltak som ikke tidligere er utredet, en kunnskapsoppdatering av noen tidligere utredede klimatiltak, og en framskrivning av mulige effekter på netto CO2-opptak av ulike nivå på implementerte tiltak. Rapporten er skrevet på bestilling fra Landbruksdirektoratet og Miljødirektoratet, og det er direktoratene som har gjort utvalget av tiltak....