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Publications

NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.

2023

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Abstract

Pandora neoaphidis is a common entomopathogenic fungus on Sitobion avenae, which is an important aphid pest on cereals in Europe. Pandora neoaphidis is known to cause epizootics (i.e. an unusually high prevalence of infected hosts) and the rapid collapse of aphid populations. We developed a weather-driven mechanistic model of the winter wheat-S. avenae-P. neoaphidis system to simulate the dynamics from spring to harvest. Aphid immigration was fixed at a rate that would lead to a pest outbreak, if not controlled by the fungus. We estimated the biocontrol efficacy by running pair-wise simulations, one with and one without the fungus. Uncertainty in model parameters and variation in weather was included, resulting in a range of simulation outcomes, and a global sensitivity analysis was performed. We identified two key understudied parameters that require more extensive experimental data collection to better assess the fungus biocontrol, namely the fungus transmission efficiency and the decay of cadaver, which defines the time window for possible disease transmission. The parameters with the largest influence on the improvement in yield were the weather, the lethal time of exposed aphids, the fungus transmission efficiency, and the humidity threshold for fungus development, while the fungus inoculum in the chosen range (between 10 and 70% of immigrant aphids carrying the fungus) was less influential. The model suggests that epizootics occurring early, around Zadoks growth stage (GS) 61, would lead to successful biocontrol, while later epizootics (GS 73) were a necessary but insufficient condition for success. These model predictions were based on the prevalence of cadavers only, not of exposed (i.e. infected but yet non-symptomatic) aphids, which in practice would be costly to monitor. The model suggests that practical Integrated Pest Management could thus benefit from including the cadavers prevalence in a monitoring program. We argue for further research to experimentally estimate these cadaver thresholds.

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Abstract

Soil management is important for sustainable agriculture, playing a vital role in food production and maintaining ecological functions in the agroecosystem. Effective soil management depends on highly accurate soil property estimation. Machine learning (ML) is an effective tool for data mining, selection of key soil properties, modeling the non-linear relationship between different soil properties. Through coupling with spectral imaging, ML algorithms have been extensively used to estimate physical, chemical, and biological properties quickly and accurately for more effective soil management. Most of the soil properties are estimated by either near infrared (NIR), Vis-NIR, or mid-infrared (MIR) in combination with different ML algorithms. Spectroscopy is widely used in estimation of chemical properties of soil samples. Spectral imaging from both UAV and satellite platforms should be taken to improve the spatial resolution of different soil properties. Spectral image super-resolution should be taken to generate spectral images in high spatial, spectral, and temporal resolutions; more advanced algorithms, especially deep learning (DL) should be taken for soil properties’ estimation based on the generated ‘super’ images. Using hyperspectral modeling, soil water content, soil organic matter, total N, total K, total P, clay and sand were found to be successfully predicted. Generally, MIR produced better predictions than Vis-NIR, but Vis-NIR outperformed MIR for a number of properties. An advantage of Vis-NIR is instrument portability although a new range of MIR portable devices is becoming available. In-field predictions for water, total organic C, extractable phosphorus, and total N appear similar to laboratory methods, but there are issues regarding, for example, sample heterogeneity, moisture content, and surface roughness. More precise and detailed soil property estimation will facilitate future soil management.