Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Joel Abbey Sherin Jose David Percival Laura Jaakola Samuel K. AsieduAbstract
Botrytis blight is an important disease of wild blueberry [(Vaccinium angustifolium (Va) and V. myrtilloides (Vm))] with variable symptoms in the field due to differences in susceptibility among blueberry phenotypes. Representative blueberry plants of varying phenotypes were inoculated with spores of B. cinerea. The relative expression of pathogenesis-related genes (PR3, PR4), flavonoid biosynthesis genes, and estimation of the concentration of ten phenolic compounds between uninoculated and inoculated samples at different time points were analyzed. Representative plants of six phenotypes (brown stem Va, green stem Va, Va f. nigrum, tall, medium, and short stems of Vm) were collected and studied using qRT-PCR. The expression of targeted genes indicated a response of inoculated plants to B. cinerea at either 12, 24, 48 or 96 h post inoculation (hpi). The maximum expression of PR3 occurred at 24 hpi in all the phenotypes except Va f. nigrum and tall stem Vm. Maximum expression of both PR genes occurred at 12 hpi in Va f. nigrum. Chalcone synthase, flavonol synthase and anthocyanin synthase were suppressed at 12 hpi followed by an upregulation at 24 hpi. The expression of flavonoid pathway genes was phenotype-specific with their regulation patterns showing temporal differences among the phenotypes. Phenolic compound accumulation was temporally regulated at different post-inoculation time points. M-coumaric acid and kaempferol-3-glucoside are the compounds that were increased with B. cinerea inoculation. Results from this study suggest that the expression of PR and flavonoid genes, and the accumulation of phenolic compounds associated with B. cinerea infection could be phenotype specific. This study may provide a starting point for understanding and determining the mechanisms governing the wild blueberry-B. cinerea pathosystem.
Authors
Igor Koloniuk Jana Fránová Jaroslava Pribylová Tatiana Sarkisova Josef Špak Jiunn Luh Tan Rostislav Zemek Radek Cmejla Martina Rejlová Lucie Valentová Jiri Sedlák Jan Holub Jan Skalik Dag-Ragnar Blystad Bijaya Sapkota Zhibo HamborgAbstract
Raspberry plants, valued for their fruits, are vulnerable to a range of viruses that adversely affect their yield and quality. Utilizing high-throughput sequencing (HTS), we identified a novel virus, tentatively named raspberry enamovirus 1 (RaEV1), in three distinct raspberry plants. This study provides a comprehensive characterization of RaEV1, focusing on its genomic structure, phylogeny, and possible transmission routes. Analysis of nearly complete genomes from 14 RaEV1 isolates highlighted regions of variance, particularly marked by indel events. The evidence from phylogenetic and sequence analyses supports the classification of RaEV1 as a distinct species within the Enamovirus genus. Among the 289 plant and 168 invertebrate samples analyzed, RaEV1 was detected in 10.4% and 0.4%, respectively. Most detections occurred in plants that were also infected with other common raspberry viruses. The virus was present in both commercial and wild raspberries, indicating the potential of wild plants to act as viral reservoirs. Experiments involving aphids as potential vectors demonstrated their ability to acquire RaEV1 but not to successfully transmit it to plants.
Authors
Luís F.J. Almeida Ivan F. Souza Luís C.C. Hurtarte Pedro P.C. Teixeira Thiago Inagaki Ivo R. Silva Carsten W. MuellerAbstract
The molecular diversity of the source substrate has been regarded as a significant controller of the proportion of plant material that is either mineralized or incorporated into soil organic matter (SOM). However, quantitative parameters to express substrate molecular diversity remain elusive. In this research, we fractionated leaves, twigs, bark, and root tissues of 13C-enriched eucalypt seedlings into hot water extractables (HWE), total solvent (acetone) extractables (TSE), a cellulosic fraction (CF), and the acid unhydrolyzable residue (AUR). We used 13C NMR spectroscopy to obtain a molecular diversity index (MDI) based on the relative abundance of carbohydrate, protein, lignin, lipid, and carbonyl functional groups within the biochemical fractions. Subsequently, we obtained artificial plant organs containing fixed proportions (25%) of their respective biochemical fractions to be incubated with soil material obtained from a Haplic Ferralsol for 200-days, under controlled temperature (25 ± 1 ◦C) and moisture adjusted to 70–80% of the soil water holding capacity. Our experimental design was a randomized complete block design, arranged according to a factorial scheme including 4 plant organs, 4 biochemical fractions, and 3 blocks as replicates. During the incubation, we assessed the evolution of CO2 from the microcosms after 1, 2, 3, 4, 7, 10, 13, 21, 28, 38, 45, 70, 80, 92, 112, 148, 178 and 200 days from the start of the incubation. After the incubation, soil subsamples were submitted to a density fractionation to separate the light fraction of SOM (LFOM) i.e., with density <1.8 g cm 3. The heavy fraction remaining was submitted to wetsieving yielding the sand-sized SOM (SSOM) and the mineral-associated SOM (MAOM), with particle-size greater and smaller than 53 μm, respectively. We found that HWE and AUR exhibited comparatively higher MDIs than the TSE and CF. During the incubation, HWE and CF were the primary sources of 13C-CO2 from all plant organs and after 92 days, the respiration of the TSE of bark and roots increased. Otherwise, the AUR contributed the least for the release of 13C-CO2. There were no significant relationships between the MDI and the amount of 13C transferred into the LFOM or SSOM. Otherwise, the transfer of 13C into the MAOM increased as a linear-quadratic function of MDI, which in turn was negatively correlated with the total 13C-CO2 loss. Overall, the MDI exerted a stronger control on the 13C-labeled MAOM than on 13C-CO2 emissions, highlighting the need to improve our ability to distinguish and quantify direct plant inputs from those of microbial origin entering soil C pools.
Authors
Melissa MagerøyAbstract
No abstract has been registered
Authors
Milan Mataruga Branislav Cvjetković Bart De Cuyper Ina Aneva Petar Zhelev Pavel Cudlín Marek Metslaid Ville Kankaanhuhta Catherine Collet Peter Annighöfer Thomas Mathes Tsakaldimi Marianthi Paitaridou Despoina Rakel J. Jónsdóttir Maria Cristina Monteverdi Giovanbattista de Dato Barbara Mariotti Dana Dina Kolevska Jelena Lazarević Inger Sundheim Fløistad Marcin Klisz Wojciech Gil Vasco Paiva Teresa Fonseca Valeriu-Norocel Nicolescu Vladan Popović Jovana Devetaković Ivan Repáč Gregor Božič Hojka Kraigher Enrique Andivia Julio J. Diez Henrik Böhlenius Magnus Löf Nebi Bilir Pedro Villar-SalvadorAbstract
The relationship between the quality of forest seedlings and their outplanting survival and growth has long been recognized. Various attributes have been proposed to measure the quality of planted seedlings in forest regeneration projects, ranging from simple morphological traits to more complex physiological and performance attributes, or a combination thereof. However, the utility and meaning of seedling quality attributes can differ significantly among regions, nursery practices, site planting conditions, species and the establishment purpose. Here, forest scientists compiled information using a common agreed questionnaire to provide a review of current practices, experiences, legislation and standards for seedling quality across 23 European countries. Large differences exist in measuring seedling quality across countries. The control of the origin of seed and vegetative material (genetic component of plant quality), and control of pests and diseases are common practices in all countries. Morphological attributes are widely used and mandatory in most cases. However, physiological attributes are hardly used at the operative level and mainly concentrated to Fennoscandia. Quality control legislation and seedling quality standards are less strict in northern European countries where seedling production is high, and quality control relies more on the agreements between producers and local plant material users. In contrast, quality standards are stricter in Southern Europe, especially in the Mediterranean countries. The control of seedling quality based on plantation and reforestation success is uncommon and depends on the conditions of the planting site, the traditional practices and the financial support provided by each country. Overall, European countries do not apply the “target seedling concept” for seedling production except for seed origin. Seedling production in many countries is still driven by traditional “know-how” and much less by scientific knowledge progress, which is not adequately disseminated and transferred to the end-users. Our review highlights the need for greater harmonization of seedling quality practices across Europe and the increased dissemination of scientific knowledge to improve seedling quality in forest regeneration activities.
Authors
Ingrid Heyerdahl Juditte Juul Diab Ragnhild Nygaard Elisabeth Oterholt Peersen Wendy Fjellstad Sebastian EiterAbstract
Over three years, motivations of participants in a neighbourhood garden seemed to reflect the development of the garden from the start-up phase, through consolidation, until a state where further existence requires transitions in responsibility and funding.
Abstract
This study assessed the meteorological and hydrological droughts and their relationship over 30 years from 1985 to 2015 in the largest river basin (Mahaweli River Basin (MRB)) in Sri Lanka. Data from 14 rainfall, 5 temperature, and 5 streamflow stations in and near the MRB were used in the present study. Universal drought indices including Standardized Precipitation Index (SPI) and Standardized Precipitation–Evapotranspiration Index (SPEI) were used to assess meteorological droughts. The Standardized Streamflow Index (SSI) was used in investigating hydrological droughts. Correlations between meteorological and hydrological droughts were obtained, annual variations were observed (in terms of SPI, SPEI, and SSI), and the spatial distributions of selected drought events were analyzed. Our results revealed that the highest correlation was found in long-term dry conditions in the wet zone. In addition, some negative correlations found showed the opposite behavior of correlations. Furthermore, in annual variations of droughts, extreme droughts were recorded in the dry zone as maximum values, while results were more prominent in the wet zone. In addition, the spatial distribution performed using SPI, SPEI, and SSI showed an extremely dry condition in 2004. Our findings are beneficial for policymaking and for the decision-makers in assessing meteorological and hydrological drought risks in the future.
Authors
Wendy FjellstadAbstract
No abstract has been registered
Authors
Lars Aksel OpsahlAbstract
In Norway we now get more up-to-date maps for land resource map (AR5), because the domain experts on agriculture in the municipalities in Norway have got access to a easy to use client. This system includes a simple web browser client and a database built on Postgis Topology. In this talk we will focus on, what is it with Postgis Topology that makes it easier to build user friendly and secure tools for updating of land resource maps like AR5. We will also say a couple of words about advantages related to traceability and data security, when using Postgis Topology. In another project, where we do a lot ST_Intersection and ST_Diff on many big Simple Feature layers that covers all of Norway, we have been struggling with Topology exceptions, wrong results and performance for years. Last two years we also tested JTS OverlayNG, but we still had problems. This year we are switching to Postgis Topology and tests so far are very promising. We also take a glance on this project here in this talk. A Postgis Topology database modell has normalised the data related to borders and surfaces as opposed to Simple Feature where this is not the case. Simple Feature database modell may be compared to not using foreign keys between students and classes in a database model, but just using a standard spreadsheet model where each student name are duplicated in each class they attend. URL’s that relate this talk https://gitlab.com/nibioopensource/pgtopo_update_gui https://gitlab.com/nibioopensource/pgtopo_update_rest https://gitlab.com/nibioopensource/pgtopo_update_sql https://gitlab.com/nibioopensource/resolve-overlap-and-gap
Abstract
The morphological ontogeny of Nanhermannia sellnicki Forsslund, 1958 is described and illustrated. In all juvenile stages the bothridial seta is minute, and two pairs of exobothridial setae are present (exa reduced to its alveolus, exp short). In the larva, the seta f1 is setiform but in the nymphs it is unobservable among cuticular tubercles. Most prodorsal and gastronotal setae of the larva are short while thouse of nymphs are long; seta in and all gastronotal and adanal setae are inserted in small individual depressions. In all instars the leg segments are oval in cross section and relatively thick, and most setae on tarsi are relatively short, thick or conical. The seta d accompanies solenidion σ on all genua, φ1 on tibia I and φ on other tibiae.