Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
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Authors
Marlee A. Tucker Aafke M. Schipper Tempe S.F. Adams Nina Attias Tal Avgar Natarscha L. Babic Kristin J. Barker Guillaume Bastille-Rousseau Dominik M. Behr Jerrold L. Belant Dean E. Beyer Jr. Niels Blaum J. David Blount Dirk Bockmuhl Ricardo Luiz Pires Boulhosa Michael B. Brown Bayarbaatar Buuveibaatar Francesca Cagnazzi Justin M. Calabrese Rok Cerne Simon Chamaillé-Jammes Aung Nyein Chan Michael J. Chase Yannick Chaval Yvette Chenaux-Ibrahim Seth G. Cherry Dusko Cirovic Emrah Coban Eric K. Cole Laura Conlee Alyson Courtemanch Gabriele Cozzi Sarah C. Davidson Darren DeBloois Nandintsetseg Dejid Vickie DeNicola Arnaud L.J. Desbiez Iain Douglas-Hamilton David Drake Michael Egan Jasper A.J. Eikelboom William F. Fagan Morgan J. Farmer Julian Fennessy Shannon P. Finnegan Christen H. Fleming Bonnie Fournier Nicholas L. Fowler Mariela G. Gantchoff Alexandre Garnier Morten Heim Marco Dietmar Heurich Petra Kaczensky Jonas Kindberg John Durrus Linnell Erling Meisingset Bram Van Moorter Atle Mysterud Manuela Panzacchi Christer Moe Rolandsen Erling Johan Solberg Olav Strand Peter Sunde Nathan J. Svoboda Jonathan Swart Jeffrey J. Thompson Katrina L. Toal Kenneth Uiseb Meredith C. VanAcker Marianela Velilla Tana L. Verzuh Bettina Wachter Brittany L. Wagler Jesse Whittington Martin Wikelski Christopher C. Wilmers George Wittemyer Julie K. Young Filip Zięba Tomasz Zwijacz-Kozica Mark A. J. Huijbregts Thomas MuellerAbstract
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Authors
Jacek Krzyżak Szymon Rusinowski Krzysztof Sitko Alicja Szada-Borzyszkowska Jacek Borgulat Radosław Stec Hans Martin Hanslin Marta PogrzebaAbstract
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Authors
Kiran Kumar Mohapatra A.K. Nayak R.K. Patra Rahul Tripathi Chinmaya Kumar Swain K.C. Moharana Anjani Kumar Mohammad Shahid Sangita Mohanty Saheed Garnaik Hari Sankar Nayak Simran Mohapatra Sekhar Udaya Nagothu Mehreteab TesfaiAbstract
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Authors
R. Jordan Price Jahn Davik Felicidad Fernandez Fernandez Helen J. Bates Samantha Lynn Charlotte F. Nellist Matteo Buti Dag Røen Nada Surbanovski Muath K Alsheikh Richard J. Harrison Daniel James SargentAbstract
Red raspberry (Rubus idaeus L.) is an economically valuable soft-fruit species with a relatively small (~300 Mb) but highly heterozygous diploid (2n = 2x = 14) genome. Chromosome-scale genome sequences are a vital tool in unravelling the genetic complexity controlling traits of interest in crop plants such as red raspberry, as well as for functional genomics, evolutionary studies, and pan-genomics diversity studies. In this study, we developed genome sequences of a primocane fruiting variety (‘Autumn Bliss’) and a floricane variety (‘Malling Jewel’). The use of long-read Oxford Nanopore Technologies sequencing data yielded long read lengths that permitted well resolved genome sequences for the two cultivars to be assembled. The de novo assemblies of ‘Malling Jewel’ and ‘Autumn Bliss’ contained 79 and 136 contigs respectively, and 263.0 Mb of the ‘Autumn Bliss’ and 265.5 Mb of the ‘Malling Jewel’ assembly could be anchored unambiguously to a previously published red raspberry genome sequence of the cultivar ‘Anitra’. Single copy ortholog analysis (BUSCO) revealed high levels of completeness in both genomes sequenced, with 97.4% of sequences identified in ‘Autumn Bliss’ and 97.7% in ‘Malling Jewel’. The density of repetitive sequence contained in the ‘Autumn Bliss’ and ‘Malling Jewel’ assemblies was significantly higher than in the previously published assembly and centromeric and telomeric regions were identified in both assemblies. A total of 42,823 protein coding regions were identified in the ‘Autumn Bliss’ assembly, whilst 43,027 were identified in the ‘Malling Jewel’ assembly. These chromosome-scale genome sequences represent an excellent genomics resource for red raspberry, particularly around the highly repetitive centromeric and telomeric regions of the genome that are less complete in the previously published ‘Anitra’ genome sequence.
Authors
Risto Päivinen Rasmus Astrup Richard A. Birdsey Johannes Breidenbach Jonas Fridman Annika Kangas Pekka E. Kauppi Michael Köhl Kari T. Korhonen Vivian Kvist Johannsen François Morneau Thomas Riedel Klemens Schadauer Iddo K. WernickAbstract
No abstract has been registered