Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2021
Authors
Kalev Adamson Marili Laas Kathrin Blumenstein Johanna Busskamp Gitta J. Langer Darta Klavina Anu Kaur Tiit Maaten Martin S. Mullett Michael M. Müller Emília Ondrušková Allar Padari Enn Pilt Taavi Riit Halvor Solheim Liina Soonvald Leho Tedersoo Eeva Terhonen Rein DrenkhanAbstract
Diplodia sapinea is a cosmopolitan endophyte and opportunistic pathogen having occurred on several conifer species in Europe for at least 200 years. In Europe, disease outbreaks have increased on several Pinus spp. in the last few decades. In this study, the genetic structure of the European and western Asian D. sapinea population were investigated using 13 microsatellite markers. In total, 425 isolates from 15 countries were analysed. A high clonal fraction and low genetic distance between most subpopulations was found. One single haplotype dominates the European population, being represented by 45.3% of all isolates and found in nearly all investigated countries. Three genetically distinct subpopulations were found: Central/North European, Italian and Georgian. The recently detected subpopulations of D. sapinea in northern Europe (Estonia) share several haplotypes with the German subpopulation. The northern European subpopulations (Latvia, Estonia and Finland) show relatively high genetic diversity compared to those in central Europe suggesting either that the fungus has existed in the North in an asymptomatic/endophytic mode for a long time or that it has spread recently by multiple introductions. Considerable genetic diversity was found even among isolates of a single tree as 16 isolates from a single tree resulted in lower clonal fraction index than most subpopulations in Europe, which might reflect cryptic sexual proliferation. According to currently published allelic patterns, D. sapinea most likely originates from North America or from some unsampled population in Asia or central America. In order to enable the detection of endophytic or latent infections of planting stock by D. sapinea, new species-specific PCR primers (DiSapi-F and Diplo-R) were designed. During the search for Diplodia isolates across the world for species specific primer development, we identified D. africana in California, USA, and in the Canary Islands, which are the first records of this species in North America and in Spain.
Abstract
Sporothrix (Sordariales, Ascomycota) is a well-supported monophyletic lineage within the Ophiostomatales, species of which occur in a diverse range of habitats including on forest trees, in the soil, associated with bark beetles and mites as well as on the fruiting bodies of some Basidiomycota. Several species have also been reported as important human and animal pathogens. During surveys of insect- and wound-associated Ophiostomatales from hardwood trees in Poland, many isolates with affinity to Sporothrix were recovered. In the present study, six undescribed Sporothrix spp. collected during these surveys are characterized based on their morphological characteristics and multi-locus phylogenenetic inference. They are described as Sporothrix cavum, Sporothrix cracoviensis, S. cryptarchum, S. fraxini, S. resoviensis, and S. undulata. Two of the Sporothrix spp. reside in the S. gossypina-complex, while one forms part of the S. stenoceras-complex. One Sporothrix sp. is a member of lineage F, and two other species grouped outside any of the currently defined species complexes. All the newly described species were recovered from hardwood habitats in association with sub-cortical insects, wounds or woodpecker cavities. These species were morphologically similar, with predominantly asexual states having hyaline or lightly pigmented conidia, which produce holoblastically on denticulate conidiogenous cells. Five of the new taxa produce ascomata with necks terminating in long ostiolar hyphae and allantoid ascospores without sheaths. The results suggest that Sporothrix species are common members of the Ophiostomatales in hardwood ecosystems of Poland.
Authors
Martin S. Mullett Rein Drenkhan Kalev Adamson Piotr Boroń Anna Lenart-Boroń Irene Barnes Michal Tomšovský Zuzana Jánošíková Katarína Adamčíková Emília Ondrušková Valentin Queloz Barbara Piskur Dmitry L. Musolin Kateryna Davydenko Margarita Georgieva Sophie Schmitz Audrius Kačergius Luisa Ghelardini Jelena Kranjec Orlović Michael Müller Funda Oskay Tine Hauptman Ágnes Halász Svetlana Markovskaja Halvor Solheim Martti Vuorinen Renate Heinzelmann Richard C. Hamelin Adam KonečnýAbstract
Dothistroma septosporum, the primary causal agent of Dothistroma needle blight, is one of the most significant foliar pathogens of pine worldwide. Its wide host and environmental ranges have led to its global success as a pathogen and severe economic damage to pine forests in many regions. This comprehensive global population study elucidated the historical migration pathways of the pathogen to reveal the Eurasian origin of the fungus. When over 3800 isolates were examined, three major population clusters were revealed: North America, Western Europe, and Eastern Europe, with distinct subclusters in the highly diverse Eastern European cluster. Modeling of historical scenarios using approximate Bayesian computation revealed the North American cluster was derived from an ancestral population in Eurasia. The Northeastern European subcluster was shown to be ancestral to all other European clusters and subclusters. The Turkish subcluster diverged first, followed by the Central European subcluster, then the Western European cluster, which has subsequently spread to much of the Southern Hemisphere. All clusters and subclusters contained both mating-types of the fungus, indicating the potential for sexual reproduction, although asexual reproduction remained the primary mode of reproduction. The study strongly suggests the native range of D. septosporum to be in Eastern Europe (i.e., the Baltic and Western Russia) and Western Asia.
Abstract
This study explores cell wall changes in Radiata pine (Pinus radiata) after modification with acetylation or furfurylation and subsequent prolonged subjection to the brown rot fungus R. placenta with the aim of better understanding the modus operandi of these two modifications. Both modifications have shown good durability in field tests, but in order to learn from their possible limitations, we used optimal environmental conditions for fungal growth, and extended the testing period compared to standard tests. Hyphae were found in acetylated wood after two weeks, and after 28 weeks of decay abundant amounts of encapsulated hyphae were present. In furfurylated wood, mass loss and a few hyphae were seen initially, but no further development was seen during weeks 18–42. The general degradation pattern was qualitatively the same for unmodified, acetylated and furfurylated wood: carbohydrates decreased relative to lignin. Acetyl groups were lost from acetylated wood during decay (earlier results), while the furan polymer did not seem to be altered by the fungus. Based on these findings it is hypothesized that modifications such as furfurylation that enhance moisture exclusion within the cell wall through impregnation polymerization offer better long term protection compared to modifications such as acetylation that depend on the replacement of hydroxyl groups with ether bound adducts that can be removed by fungi.
Abstract
No abstract has been registered
Authors
Spiridoula Athanasiadou Marit Almvik Jarkko Hellström Eva Madland Nebojsa Simic Håvard SteinshamnAbstract
Helminth parasitic infections are common in small ruminants in Norway; infection is usually treated with anthelmintic drugs, but anthelmintic resistance is an increasing problem. It is necessary to identify strategies to reduce the use of anthelmintic drugs and mitigate the impact of anthelmintic resistance. Condensed tannin (CT)-rich forages have been shown to reduce the helminth burden in small ruminants, but these forages have limited cultivation potential in Scandinavia. A good source for CT in cold climatic regions may be the bark of several commercially utilized tree species. In the present study, we determined the content and characterized the type of CT in bark extracts of pine (Pinus sylvestris L.), spruce (Picea abies L.), and birch (Betula pubescens). Extracts of selected bark samples were tested for their anthelmintic efficacy against the ovine infectious nematode Teladorsagia circumcincta. Total CT content was higher in the bark from younger (10–40 years old) pine and spruce trees; it decreased with tree age in pine, whereas it remained relatively stable in the bark of spruce and birch. Pine trees consisted of 100% procyanidins, whereas prodelphinins were present in most spruce (4–17%) and all birch samples (5–34%). Our studies clearly showed that there is variation in the anthelmintic activity of water and acetone extracts of bark samples collected from various sites around Norway, as this was measured with two independent in vitro assays, the egg hatch and larvae motility assays. The anthelmintic activity of some extracts was consistent between the two assays; for example, extracts from the three samples with the highest CT content showed very high activity in both assays, whereas the extract from the sample with the lowest CT content showed the lowest activity in both assays. For other extracts, activity was not consistent across the assays, which could be attributed to the susceptibility of the different stages of the parasitic life cycle. We demonstrated that bark extracts from commercially used trees in Scandinavia have the potential to be used as alternatives to anthelmintics. Further work should focus on refining the associations between bark extracts and anthelmintic activity to identify the best strategies to reduce the input of anthelmintic drugs in livestock production systems.
Abstract
We designed and deployed an apparatus to apply UV light for suppression of powdery mildew in open field production of strawberry. The unit was evaluated in a commercial production field for one season, and for two additional seasons in open field research plots at the University of Florida Gulf Coast Research and Education Center. The apparatus contained two 180-cm-long hemicylindrical arrays of twenty 55-W low-pressure discharge UV-C lamps (operated at 30 W; peak wavelength = 254 nm) backed by polished aluminum reflectors covering two adjacent beds of the strawberry planting. The lamp arrays were suspended within a steel carriage that was tractor-drawn through the planting at 2.3, 4.6, and 5.6 km h−1. Nighttime applications of UV-C at doses ranging from 65 to 170 J⋅m−2 either once or twice weekly provided suppression of foliar and fruit disease that was consistently equal to or better than that provided by a commercial calendar-based fungicide spray program.
Authors
Elisabeth Pötzelsberger Martin M. Gossner Ludwig Beenken Anna Gazda Michal Petr Tiina Ylioja Nicola La Porta Dimitrios N. Avtzis Elodie Bay Maarten De Groot Rein Drenkhan Mihai-Leonard Duduman Rasmus Enderle Margarita Georgieva Ari Hietala Björn Hoppe Herve Jactel Kristjan Jarni Srđan Keren Zsolt Keseru Marcin Koprowski Andrej Kormuťák María Josefa Lombardero Aljona Lukjanova Vitas Marozas Edurad Mauri Maria Cristina Monteverdi Per Holm Nygaard Nikica Ogris Nicolai Olenici Christophe Orazio Bernhard Perny Glória Pinto Michael Power Radoslaw Puchalka Hans Peter Ravn Ignacio Sevillano Sophie Stroheker Paul Taylor Panagiotis Tsopelas Josef Urban Kaljo Voolma Marjana Westergren Johanna Witzell Olga Zborovska Milica ZlatkovicAbstract
For non-native tree species with an origin outside of Europe a detailed compilation of enemy species including the severity of their attack is lacking up to now. We collected information on native and non-native species attacking non-native trees, i.e. type, extent and time of first observation of damage for 23 important non-native trees in 27 European countries. Our database includes about 2300 synthesised attack records (synthesised per biotic threat, tree and country) from over 800 species. Insects (49%) and fungi (45%) are the main observed biotic threats, but also arachnids, bacteria including phytoplasmas, mammals, nematodes, plants and viruses have been recorded. This information will be valuable to identify patterns and drivers of attacks, and trees with a lower current health risk to be considered for planting. In addition, our database will provide a baseline to which future impacts on non-native tree species could be compared with and thus will allow to analyse temporal trends of impacts.
Authors
Andrii Butkovskyi Yuying Jing Hege Bergheim Diana Lazar Ksenia Gulyaeva Sven R. Odenmarck Hans Ragnar Norli Karolina M. Nowak Anja Miltner Matthias Kästner Trine EggenAbstract
Pesticides in agricultural surface water runoff cause a major threat to freshwater systems. Installation of filter systems or constructed wetlands in areas of preferential run-off is a possible measure for pesticides abatement. To develop such systems, combinations of filter materials suitable for retention of both hydrophilic and hydrophobic organic pesticides were tested for pesticide removal in planted microcosms. The retention of six pesticides frequently detected in surface waters (bentazone, MCPA, metalaxyl, propiconazole, pencycuron, and imidacloprid) was evaluated in unplanted and planted pot experiments with novel bed material mixtures consisting of pumice, vermiculite, water super-absorbent polymer (SAP) for retention of ionic and water soluble pesticides, and synthetic hydrophobic wool for adsorption of hydrophobic pesticides. The novel materials were compared to soil with high organic matter content. The highest retention of the pesticides was observed in the soil, with a considerable translocation of pesticides into the plants, and low leaching potential, in particular for the hydrophobic compounds. However, due to the high retention of pesticides in soil, environmental risks related to their long term mobilization cannot be excluded. Mixtures of pumice and vermiculite with SAP resulted in high retention of i) water and ii) both hydrophilic and hydrophobic pesticides but with much lower leaching potential compared to the mineral systems without SAP. Mixtures of such materials may provide near natural treatment options in riparian strips and also for treatment of rainwater runoff without the need for water containment systems.
Abstract
Leaf blotch diseases (LBD), such as Septoria nodorum bloch (Parastagnospora nodorum), Septoria tritici blotch (Zymoseptoria tritici) and Tan spot (Pyrenophora tritici-repentis) can cause severe yield losses (up to 50%) in Norwegian spring wheat (Triticum aestivum) and are mainly controlled by fungicide applications. A forecasting model to predict disease risk can be an important tool to optimize disease control. The association between specific weather variables and the development of LBD differs between wheat growth stages. In this study, a mathematical model to estimate phenological development of spring wheat was derived based on sowing date, air temperature and photoperiod. Weather factors associated with LBD severity were then identified for selected phenological growth stages by a correlation study of LBD severity data (17 years). Although information regarding host resistance and previous crop were added to the identified weather factors, two purely weather-based risk prediction models (CART, classification and regression tree algorithm) and one black box model (KNN, based on K nearest neighbor algorithm) were most accurate to predict moderate to high LBD severity (>5% infection). The predictive accuracy of these models (76–83%) was compared to that of two existing models used in Norway and Denmark (60 and 61% accuracy, respectively). The newly developed models performed better than the existing models, but still had the tendency to overestimate disease risk. Specificity of the new models varied between 49 and 74% compared to 40 and 37% for the existing models. These new models are promising decision tools to improve integrated LBD management of spring wheat in Norway.