Marit Almvik
Research Scientist
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CV Marit AlmvikBiography
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Authors
Marianne Stenrød Marit Almvik Ole Martin Eklo Anne Louise Gimsing Roger Holten Kai Künnis-Beres Mats Larsbo Linas Putelis Katri Siimes Inara Turka Jaana Uusi-KämppäAbstract
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Marit Almvik Randi Bolli Agnethe Christiansen Ole Martin Eklo Roger Holten Paulien Mulder Gunvor Senneset Marianne StenrødAbstract
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Live Lingaas Nesse Kristin Forfang Jannice Schau Slettemeås Snorre Hagen Marianne Sunde Abdelhameed Elameen Gro Skøien Johannessen Marianne Stenrød Girum Tadesse Tessema Marit Almvik Hans Geir EikenAbstract
The abundance and diversity of antimicrobial-resistant bacteria (ARB) and antimicrobial resistance genes (ARGs) in agricultural landscapes may be important for the spread of antimicrobial resistance (AMR) in the environment. The aim of this study was to apply screening methods for ARB and ARGs to investigate the impact of farming on the prevalence of AMR in a country with low antibiotic usage. We have analyzed samples (n = 644) from soil and wild terrestrial animals and plants (slugs, snails, mice, shrews, earthworms, and red clover) collected over two years in agricultural fields accompanied by nearby control areas with low human activity. All samples were investigated for the occurrence of 35 different ARGs using high-throughput quantitative PCR (HT-qPCR) on a newly developed DNA array. In addition, samples from the first year (n = 415) were investigated with a culture-based approach combined with whole-genome sequencing (WGS) to identify antimicrobial-resistant E. coli (AREC). ARGs were detected in 59.5% of all samples (2019 + 2020). AREC, which was only investigated in the 2019 samples, was identified in 1.9% of these. Samples collected in the autumn showed more ARGs and AREC than spring samples, and this was more pronounced for organic fields than for conventional fields. Control areas with low human activity showed lower levels of ARGs and a lack of AREC. The use of livestock manure was correlated with a higher level of ARG load than other farming practices. None of the soil samples contained antibiotics, and no association was found between AMR and the levels of metals or pesticides. High qualitative similarity between HT-qPCR and WGS, together with the positive controls to the validation of our 35 ARG assays, show that the microfluid DNA array may be an efficient screening tool on environmental samples. In conclusion, even in a country with a very low consumption of antimicrobials by production animals, our results support the hypothesis of these animals being a source of AREC and ARGs in agricultural environments, primarily through the use of manure.
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Division of Environment and Natural Resources
TerraNordica: Nordic Partnership for Soil Health and Agroecology
Soil health and Ecosystem Services (ES) are assessed through measuring carefully selected physical, chemical, and biological soil indicators related to dynamic soil properties, and compare these to thresholds or standard values that separate healthy from unhealthy conditions.
Division of Biotechnology and Plant Health
REKORN: Can regenerative cultivation methods contribute to reduce the risk of fungal diseases in cereals?
Regenerative agriculture is referred to as a bridge between organic and conventional agriculture and has received increased attention in recent years. Regenerative agriculture focuses on soil health and cultivation measures that can stimulate soil life and plant growth. An improvement in soil health is visualized, among other things, in increased carbon storage in the soil, limited soil compaction and increased microbiological diversity. The methods used to improve soil health within cereal cultivation may include crop rotation, reduced tillage, intercropping, use of catch crops and surface composting where plant residues are mixed into the top-soil layer.
Division of Biotechnology and Plant Health
Green crop protection: Cruciferous plants as a green alternative to chemical pesticides in cereals
Cereal plants infested with plant pathogenic fungi or nematodes may have reduced grain quality and yield. These diseases can partly be controlled by using chemical pesticides. The purpose of this project is to identify "green" methods to mitigate plant pathogenic fungi and nematodes in cereals, as an alternative to chemical pesticides.