Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Marcos Viejo Torstein Tengs Igor A. Yakovlev Hugh Cross Paal Krokene Jorunn Elisabeth Olsen Carl Gunnar FossdalAbstract
An epigenetic memory of the temperature sum experienced during embryogenesis is part of the climatic adaptation strategy of the long-lived gymnosperm Norway spruce. This memory has a lasting effect on the timing of bud phenology and frost tolerance in the resulting epitype trees. The epigenetic memory is well characterized phenotypically and at the transcriptome level, but to what extent DNA methylation changes are involved have not previously been determined. To address this, we analyzed somatic epitype embryos of Norway spruce clones produced at contrasting epitype-inducing conditions (18 and 28°C). We screened for differential DNA methylation in 2744 genes related mainly to the epigenetic machinery, circadian clock, and phenology. Of these genes, 68% displayed differential DNA methylation patterns between contrasting epitype embryos in at least one methylation context (CpG, CHG, CHH). Several genes related to the epigenetic machinery (e.g., DNA methyltransferases, ARGONAUTE) and the control of bud phenology (FTL genes) were differentially methylated. This indicates that the epitype-inducing temperature conditions induce an epigenetic memory involving specific DNA methylation changes in Norway spruce.
Abstract
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Authors
Heidi Udnes Aamot Hesam Mousavi Jafar Razzaghian Guro Brodal Michael Sulyok Rudolf Krska Simon G. Edwards Ingerd Skow HofgaardAbstract
In Norway, high levels of mycotoxins are occasionally observed in oat grain lots, and this cause problems for growers, livestock producers and the food and feed industries. Mycotoxins of primary concern are deoxynivalenol (DON) produced by Fusarium graminearum and HT2- and T2-toxins (HT2+T2) produced by Fusarium langsethiae. Although effort has been made to understand the epidemiology of F. langsethiae in oats, this is still not fully understood. In the present study, we aimed to increase our understanding of the F. langsethiae – oat interaction. Resistance to F. langsethiae was studied in three oat varieties after inoculation at early (booting, heading, flowering) or late (flowering, milk, dough) growth stages in greenhouse experiments. The oat varieties had previously shown different levels of resistance to F. graminearum: Odal, Vinger (both moderately resistant), and Belinda (susceptible). The levels of F. langsethiae DNA and HT2+T2 in harvested grain were measured, and differences in aggressiveness (measured as the level of F. langsethiae DNA in grain) between F. langsethiae isolates were observed. Substantial levels of F. langsethiae DNA and HT2+T2 were detected in grain harvested from oats that had been spray-inoculated at heading or later growth stages, suggesting that oats are susceptible to F. langsethiae from heading and onwards. Vinger had a moderate resistance to F. langsethiae/HT2+T2, whereas Odal and Belinda were relatively susceptible. We observed that late inoculations resulted in relatively higher levels of trichothecene A metabolites other than HT2+T2 (mostly glycosylated HT-2, and smaller amounts of some other metabolites) in harvested grain, which indicate that infections close to harvest may pose a further risk to food and feed safety.
Authors
Igor Koloniuk Jana Fránová Jaroslava Pribylová Tatiana Sarkisova Josef Špak Jiunn Luh Tan Rostislav Zemek Radek Cmejla Martina Rejlová Lucie Valentová Jiri Sedlák Jan Holub Jan Skalik Dag-Ragnar Blystad Bijaya Sapkota Zhibo HamborgAbstract
Raspberry plants, valued for their fruits, are vulnerable to a range of viruses that adversely affect their yield and quality. Utilizing high-throughput sequencing (HTS), we identified a novel virus, tentatively named raspberry enamovirus 1 (RaEV1), in three distinct raspberry plants. This study provides a comprehensive characterization of RaEV1, focusing on its genomic structure, phylogeny, and possible transmission routes. Analysis of nearly complete genomes from 14 RaEV1 isolates highlighted regions of variance, particularly marked by indel events. The evidence from phylogenetic and sequence analyses supports the classification of RaEV1 as a distinct species within the Enamovirus genus. Among the 289 plant and 168 invertebrate samples analyzed, RaEV1 was detected in 10.4% and 0.4%, respectively. Most detections occurred in plants that were also infected with other common raspberry viruses. The virus was present in both commercial and wild raspberries, indicating the potential of wild plants to act as viral reservoirs. Experiments involving aphids as potential vectors demonstrated their ability to acquire RaEV1 but not to successfully transmit it to plants.
Abstract
Purpose of Review Forestry in northern temperate and boreal regions relies heavily on conifers. Rapid climate change and associated increases in adverse growing conditions predispose conifers to pathogens and pests. The much longer generation time and presumably, therefore, lower adaptive capacity of conifers relative to their native or non-native biotic stressors may have devastating consequences. We provide an updated overview of conifer defences underlying pathogen and pest resistance and discuss how defence traits can be used in tree breeding and forest management to improve resistance. Recent Findings Breeding of more resilient and stress-resistant trees will benefit from new genomic tools, such as genotyping arrays with increased genomic coverage, which will aid in genomic and relationship-based selection strategies. However, to successfully increase the resilience of conifer forests, improved genetic materials from breeding programs must be combined with more flexible and site-specific adaptive forest management. Summary Successful breeding programs to improve conifer resistance to pathogens and pests provide hope as well as valuable lessons: with a coordinated and sustained effort, increased resistance can be achieved. However, mechanisms underlying resistance against one stressor, even if involving many genes, may not provide any protection against other sympatric stressors. To maintain the adaptive capacity of conifer forests, it is important to keep high genetic diversity in the tree breeding programs. Choosing forest management options that include diversification of tree-species and forest structure and are coupled with the use of genetically improved plants and assisted migration is a proactive measure to increase forest resistance and resilience to foreseen and unanticipated biotic stressors in a changing climate.
Authors
Ingerd Skow Hofgaard Guro Brodal Heidi Udnes Aamot Marit Almvik Aina Lundon Russenes Morten Lillemo Simon Graham EdwardsAbstract
Oat harvested from plants infested with plant pathogenic fungi within the Fusarium head blight (FHB) complex may sometimes contain high levels of mycotoxins, which makes the grain unsuitable for food and feed. Fusarium graminearum, a deoxynivalenol (DON) producer, and Fusarium langsethiae, a T-2 toxin (T2) and HT-2 toxin (HT2) producer, are commonly occurring in Norwegian oats. We have analysed grains of Nordic oat varieties and breeding lines for the content of mycotoxins and DNA of Fusarium species belonging to the FHB disease complex (Hofgaard et al. 2022). The grains were harvested from field trials located in South-East Norway in the years 2011-2020. The ranking of oat varieties according to HT2+T2 levels corresponded with the ranking according to the DNA levels of F. langsethiae. However, this ranking did not resemble the ranking for DON and F. graminearum DNA. Our results implies that a moderate resistance to DON producers does not guarantee a moderate resistance to HT2+T2 producers. Separate tests are therefore necessary to determine the resistance towards DON and HT2+T2 producers in oats. This creates practical challenges for the screening of FHB resistance in oats as todays’ screening focuses on resistance to F. graminearum and DON. We identified oat varieties with generally low levels of both mycotoxins and FHB pathogens which should be promoted to mitigate mycotoxin risk in Norwegian oats.
Authors
Ingerd Skow Hofgaard Heidi Udnes Aamot Till Seehusen Marit Almvik Guro Brodal Ruth Dill-Macky Simon Graham EdwardsAbstract
In Norway, Fusarium diseases and associated mycotoxin contamination in spring oats occasionally cause problems for growers, livestock producers and the food and feed industries. Besides weather factors, such as rainfall and temperature in the critical periods around flowering and before harvest, inoculum production and disease development are influenced by agricultural practices. The occurrence of Fusarium graminearum and DON in oat grain lots do not generally correlate with that of Fusarium langsethiae and HT-2/T-2-toxins. Therefore, to develop a robust disease management strategy, there is a need to reveal the influence of weather and agricultural practice on disease development in oats for both these fungal species. Through various research projects NIBIO researchers have performed field trials to study the effects of straw management, tillage practice, cultivar, and chemical and biological control treatments on the development of Fusarium spp. and mycotoxins in oats. In particular we have investigated whether the amount of straw residues and tillage practice influences the survival of Fusarium spp. in residues, and the subsequent Fusarium spp. infection of the harvested grains. In addition, Fusarium spp. DNA and mycotoxin content (DON and HT-2/T-2) have been analysed in oats from current official cultivar trials. This work has been a collaboration between NIBIO and the Norwegian Agricultural Extension Service. Results will be presented on the Fusarium spp. and mycotoxin contamination of grains harvested from oats grown under various agricultural practices. High incidence of Fusarium avenaceum are often observed in harvested grains as well as straw residues. Fusarium graminearum is also commonly detected. Despite the high concentrations of F. langsethiae DNA and HT-2/T-2 toxins sometimes recorded in oat grain, only low levels of F. langsethiae have been detected in crop residues and air samples. We speculate that the life cycle of F. langsethiae differs from those of F. graminearum and F. avenaceum with regards to survival, inoculum production and dispersal.
Abstract
The large pine weevil (Hylobius abietis) is a major regeneration pest in commercial forestry. Pesticide application has historically been the preferred control method, but pesticides are now being phased out in several countries for environmental reasons. There is, thus, a need for alternative plant protection strategies. We applied methyl jasmonate (MeJA), salicylic acid (SA) or oxalic acid (OxA) on the stem of 2-year-old Norway spruce (Picea abies) plants to determine effects on inducible defenses and plant growth. Anatomical examination of stem cross-sections 9 weeks after application of 100 mM MeJA revealed massive formation of traumatic resin ducts and greatly reduced sapwood growth. Application of high concentrations of SA or OxA (500 and 200 mM, respectively) induced much weaker physiological responses than 100 mM MeJA. All three treatments reduced plant height growth significantly, but the reduction was larger for MeJA (~55%) than for SA and OxA (34-35%). Lower MeJA concentrations (5-50 mM) induced comparable traumatic resin duct formation as the high MeJA concentration but caused moderate (and non-significant) reductions in plant growth. Two-year-old spruce plants treated with 100 mM MeJA showed reduced mortality after exposure to pine weevils in the field, and this enhanced resistance-effect was statistically significant for three years after treatment.
Abstract
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