Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2018
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Carbonic anhydrase (CA) plays an important physiological role in all biological systems by accelerating the interconversion of CO2 and HCO3 −. In algae, CA is essential for photosynthesis: external CA (CAext) dehydrates HCO3 −, enhancing the supply of CO2 to the cell surface, and internal CA (CAint) interconverts HCO3 − and CO2 to maintain the inorganic carbon (Ci) pool and supply CO2 to RuBisCO. We frst conducted a literature review comparing the conditions in which CA extraction and measurement have been carried out, using the commonly used Wilbur–Anderson method. We found that the assay has been widely modifed since its introduction in 1948, mostly without being optimized for the species tested. Based on the review, an optimized protocol for measuring CA in Macrocystis pyrifera was developed, which showed that the assay conditions can strongly afect CA activity. Tris–HCl bufer gave the highest levels of CA activity, but phosphate bufer reduced activity signifcantly. Bufers containing polyvinylpyrrolidone (PVP) and dithiothreitol (DTT) stabilized CA. Using the optimized assay, CAext and CAint activities were readily measured in Macrocystis with higher precision compared to the non-optimized method. The CAint activity was 2×higher than CAext, which is attributed to the Ci uptake mechanisms of Macrocystis. This study suggests that the CA assay needs to be optimized for each species prior to experimental work to obtain both accurate and precise results.
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Wendy Marie WaalenAbstract
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Authors
Rene Schils Jørgen E. Olesen Kurt-Christian Kersebaum Bert Rijk Michael Oberforster Valery Kalyada Maksim Khitrykau Anne Gobin Hristofor Kirchev Vanya Manolova Ivan Manolov Mirek Trnka Petr Hlavinka Taru Palosuo Pirjo Peltonen-Sainio Lauri Jauhiainen Josiane Lorgeou Helene Marrou Nikos Danalatos Sotirios Archontoulis Nandor Fodor John Spink Pier Paolo Roggero Simona Bassu Antonio Pulina Till Seehusen Anne Kjersti Uhlen Katarzyna Zylowska Anna Nierobca Jerzy Kozyra Joao Vasco Silva Benvindo Martins Macas José Coutinho Viorel Ion Jozef Takác M. Ines Minguez Henrik Eckersten Lilia Levy Juan Manuel Herrera Jürg Hiltbrunner Oleksii Kryvobok Oleksandr Kryvoshein Roger Sylvester-Bradley Daniel Kindred Cairistiona F.E. Topp Hendrik Boogaard Hugo de Groot Jan Peter Lesschen Lenny van Bussel Joost Wolf Mink Zijlstra Marloes P. van Loon Martin K. van IttersumAbstract
Europe accounts for around 20% of the global cereal production and is a net exporter of ca. 15% of that production. Increasing global demand for cereals justifies questions as to where and by how much Europe’s production can be increased to meet future global market demands, and how much additional nitrogen (N) crops would require. The latter is important as environmental concern and legislation are equally important as production aims in Europe. Here, we used a country-by-country, bottom-up approach to establish statistical estimates of actual grain yield, and compare these to modelled estimates of potential yields for either irrigated or rainfed conditions. In this way, we identified the yield gaps and the opportunities for increased cereal production for wheat, barley and maize, which represent 90% of the cereals grown in Europe. The combined mean annual yield gap of wheat, barley, maize was 239 Mt, or 42% of the yield potential. The national yield gaps ranged between 10 and 70%, with small gaps in many north-western European countries, and large gaps in eastern and south-western Europe. Yield gaps for rainfed and irrigated maize were consistently lower than those of wheat and barley. If the yield gaps of maize, wheat and barley would be reduced from 42% to 20% of potential yields, this would increase annual cereal production by 128 Mt (39%). Potential for higher cereal production exists predominantly in Eastern Europe, and half of Europe’s potential increase is located in Ukraine, Romania and Poland. Unlocking the identified potential for production growth requires a substantial increase of the crop N uptake of 4.8 Mt. Across Europe, the average N uptake gaps, to achieve 80% of the yield potential, were 87, 77 and 43 kg N ha−1 for wheat, barley and maize, respectively. Emphasis on increasing the N use efficiency is necessary to minimize the need for additional N inputs. Whether yield gap reduction is desirable and feasible is a matter of balancing Europe’s role in global food security, farm economic objectives and environmental targets.
Authors
Roland Bol Gerard Gruau Per-Erik Mellander Rémi Dupas Marianne Bechmann Eva Skarbøvik Magdalena Bieroza Faruk Djodjic Miriam Glendell Philip Jordan Bas van der Grift Michael Rode Erik Smolders Mieke Verbeeck Sen Gu Erwin Klumpp Ina Pohle Maelle Fresne Chantal Gascuel-OdouxAbstract
In this paper, we outline several recent insights for the priorities and challenges for future research for reducing phosphorus (P) based water eutrophication in the agricultural landscapes of Northwest Europe.We highlight that new research efforts best be focused on headwater catchments as they are a key influence on the initial chemistry of the larger river catchments, and here many management interventions are most effectively made. We emphasize the lack of understanding on how climate change will impact on P losses from agricultural landscapes. Particularly, the capability to disentangle current and future trends in P fluxes, due to climate change itself, from climate driven changes in agricultural management practices and P inputs. Knowing that, future climatic change trajectories for Western Europe will accelerate the release of the most bioavailable soil P. We stress the ambiguities created by the large varieties of sources and storage/transfer processes involved in P emissions in landscapes and the need to develop specific data treatment methods or tracers able to circumvent them, thereby helping catchment managers to identify the ultimate P sources that most contribute to diffuse P emissions. We point out that soil and aqueous P exist not only in various chemical forms, but also in range of less considered physical forms e.g., dissolved, nanoparticulate, colloidal and other particulates, all affected differently by climate as well as other environmental factors, and require bespoke mitigation measures. We support increased high resolution monitoring of headwater catchments, to not only help verify the effectiveness of catchments mitigation strategies, but also add data to further develop new water quality models (e.g., those include Fe-P interactions) which can deal with climate and land use change effects within an uncertainty framework. We finally conclude that there is a crucial need for more integrative research efforts to deal with our incomplete understanding of the mechanisms and processes associated with the identification of critical source areas, P mobilization, delivery and biogeochemical processing, as otherwise even highintensity and high-resolution research efforts will only reveal an incomplete picture of the full global impact of the terrestrial derived P on downstream aquatic and marine ecosystems.
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We describe Arge bella Wei & Du sp. nov., a large and beautiful species of Argidae from south China, and report its mitochondrial genome based on high-throughput sequencing data. We present the gene order, nucleotide composition of proteincoding genes (PCGs), and the secondary structures of RNA genes. The nearly complete mitochondrial genome of A. bella has a length of 15,576 bp and a typical set of 37 genes (22 tRNAs, 13 PCGs, and 2 rRNAs). Three tRNAs are rearranged in the A. bella mitochondrial genome as compared to the ancestral type in insects: trnM and trnQ are shuffled, while trnW is translocated from the trnW -trnC-trnY cluster to a location downstream of trnI. All PCGs are initiated by ATN codons, and terminated with TAA, TA or T as stop codons. All tRNAs have a typical cloverleaf secondary structure, except for trnS1. H821 of rrnS and H976 of rrnL are redundant. A phylogenetic analysis based on mitochondrial genome sequences of A. bella, 21 other symphytan species, two apocritan representatives, and four outgroup taxa supports the placement of Argidae as sister to the Pergidae within the symphytan superfamily Tenthredinoidea.
Authors
Merethe Kleiven Lisa Magdalena Rossbach Julian Alberto Gallego-Urrea Dag Anders Brede Deborah H Oughton Claire CoutrisAbstract
Using Caenorhabditis elegans as a model organism, this study addresses the potential linkage between toxicity of NM300K Ag nanoparticles (AgNPs), their particle size distribution and the presence of dissolved Ag in the test media. Of the three endpoints assessed (growth, fertility and reproduction), reproduction was the most sensitive, with 50% effect concentration (EC50) ranging from 0.26-0.84 mg Ag L-1 and 0.08-0.11 mg Ag L-1 for NM300K and AgNO3, respectively. Silver uptake by C. elegans was similar for both forms of Ag, while bioaccumulation was higher in AgNO3 exposure. The observed differences in toxicity between NM300K and AgNO3 did not correlate to bioaccumulated Ag, which suggests the toxicity to be a function of the type of exposing agent (AgNPs vs AgNO3) and their mode of action. Before addition of the food source, E. coli, size fractionation revealed that dissolved Ag comprised 13-90 % and 4-8 % of total Ag in the AgNO3 and NM300K treatments, respectively. No dissolved Ag was detectable in the actual test media, due to immediate Ag adsorption to bacteria. Results from the current study highlight that information on behavior and characterization of exposure conditions is essential for nanotoxicity studies.