Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2021
Abstract
A new stubby-root nematode belonging to the Trichodorus sparsus complex was found in association with serious damage to Hill’s Yew hedges (Taxus x media ´Hillii´) in Oslo in 2017, characterised by chlorosis, wilting and loss of needles. T. hellalae n. sp. is about 800 μm long with medium-sized onchiostyle (55 μm, average), characterized in male by two ventromedian cervical papillae located beyond the onchiostyle region and with the secretory excretory pore (SE-pore) in between, in most type specimens, three ventromedian precloacal supplements with the posteriormost one opposite the anterior end of spicule manubrium and spicules 40 μm long (average) with widened manubrium, gradually tapered to a narrower blade without ornamentation of striae or bristles, but showing a minor indentation at level of posterior border of capsule of suspensor muscles. Gubernaculum with thickened keel-like posterior end and a thickened refractive anterior border. Females are characterised by a short pear-shaped vagina, less than 1/3rd of corresponding body width and very small rounded triangular vaginal sclerotized pieces in longitudinal optical section and vulva pore-like in ventral view; on each body side one sublateral body pore at about 3.5 body width anterior to vulva and one postadvulvar body pore. According to D2-D3 analyses, the Trichodorus hellalae n. sp. sequences are embedded in a maximally supported clade with several T. variabilis lineages. However, morphological and molecular species delimitation both support Trichodorus hellalae n. sp. as being a new species. Therefore, T. variabilis now appears to in fact consists of several cryptic species.
Authors
Johanna Eva Bodin Tage Thorstensen Muath K Alsheikh Dean Basic Rolf Brudvik Edvardsen Knut Tomas Dalen Nur Duale Ole Martin Eklo Åshild Gunilla Ergon Anne-Marthe Ganes Jevnaker Kjetil Hindar Leiv Sigve Håvarstein Martin Malmstrøm Kaare Magne Nielsen Siri Lie Olsen Eli Knispel Rueness Monica Sanden Ville Erling Sipinen Kristine von Krogh Dag Inge Våge Anna Wargelius Per Hans Micael Wendell Siamak Pour Yazdankhah Jan Alexander Ellen Merete Bruzell Gro Ingunn Hemre Vigdis Vandvik Angelika Agdestein Edel O. Elvevoll Dag Olav Hessen Merete Hofshagen Trine Husøy Helle Katrine Knutsen Åshild Krogdahl Asbjørn Magne Nilsen Trond Rafoss Olaug Taran Skjerdal Inger-Lise Karin Steffensen Tor Arne Strand Gaute Velle Yngvild WastesonAbstract
The Norwegian Scientific Committee for Food and Environment (VKM) initiated this work to examine the extent to which organisms developed by genome-editing technologies pose new challenges in terms of risk assessment. This report considers whether the risk assessment guidance on genetically modified organisms, developed by the European Food Safety Authority (EFSA), can be applied to evaluate potential risks of organisms developed by genome editing. Background Gene technology has allowed for the transfer of genes between organisms and species, and thereby to design altered genotypes with novel traits, i.e. GMOs. A new paradigm started in the early 2000s with the development of genome-editing techniques. Unlike traditional genetic modification techniques resulting in insertion of foreign DNA fragments at random locations in the genome, the new genome-editing techniques additionally open for a few single nucleotide edits or short insertions/deletions at a targeted site in an organism’s genome. These new techniques can be applied to most types of organisms, including plants, animals and microorganisms of commercial interest. An important question is how the novel, genome-edited organisms should be evaluated with respect to risks to health and the environment. The European Court of Justice decided in 2018 to include genome-edited organisms in the GMO definition and hence in the regulatory system already in place. This implies that all products developed by genome-editing techniques must be risk-assessed within the existing regulatory framework for GMOs. The European and Norwegian regulatory frameworks regulate the production, import and placing on the market of food and feed containing, consisting of or produced from GMOs, as well as the release of GMOs into the environment. The assessment draws on guidance documents originally developed by EFSA for risk assessment of GMOs, which were drawn up mainly to address risks regarding insertion of transgenes. The new genome-editing techniques, however, provide a new continuum of organisms ranging from those only containing a minor genetic alteration to organisms containing insertion or deletion of larger genomic regions. Risk assessment of organisms developed by genome editing The present discourse on how new genome-editing techniques should be regulated lacks an analysis of whether risk assessment methodologies for GMOs are adequate for risk assessment of organisms developed through the use of the new genome-editing techniques. Therefore, this report describes the use of genome-editing techniques in food and feed production and discusses challenges in risk assessment with the regulatory framework. Specifically, this report poses the question as to whether the EFSA guidance documents are sufficient for evaluating risks to health and environment posed by genome-edited plants, animals and microorganisms. To address these questions, the report makes use of case examples relevant for Norway. These examples, intended for food and feed, include oilseed rape with a modified fatty acid profile, herbicide-tolerant and pest-resistant crops, sterile salmon, virus-resistant pigs and hornless cattle. The report considers all aspects of the stepwise approach as described in the EFSA guidance documents. Conclusions The inherent flexibility of the EFSA guidance makes it suitable to cover health and environmental risk assessments of a wide range of organisms with various traits and intended uses. Combined with the embedded case-by-case approach the guidance is applicable to genome-edited organisms. The evaluation of the guidance demonstrates that the parts of the health and environmental risk assessment concerned with novel traits (i.e. the phenotype of the organism) may be fully applied to all categories of genome-edited organisms. ............
Authors
Kirill Ovchinnikov Christian Kranjec Amar A. Telke Morten Kjos Tage Thorstensen Dzung B. DiepAbstract
No abstract has been registered
Authors
Ghislain T. Tepa-Yotto Henri E. Z. Tonnang Georg Goergen Sevgan Subramanian Emily Kimathi Elfatih M. Abdel-Rahman Daniel Flø Karl Thunes Komi K. M. Fiaboe Saliou Niassy Anani Bruce Samira A. Mohamed Manuele Tamò Sunday Ekesi May-Guri SæthreAbstract
Simple Summary: The fall armyworm (FAW), Spodoptera frugiperda has now become a pest of global importance. Its introduction and detection in Africa in 2016, and subsequent introduction and spread into Asia and Australia, has put several millions of food producers and maize farmers at risk. Not all pest management strategies are sustainable. Biological control with the use of parasitoid wasps is one of the durable and environmentally sound options. The present study was initiated to predict the habitats of high establishment potential of key parasitoids of FAW in South America, which might prove to be effective as classical biological control agents of FAW in regions where it is an invasive species under current and future climate scenarios. The prospective parasitoids are the following: Chelonus insularis, Cotesia marginiventris, Eiphosoma laphygmae, Telenomus remus and Trichogramma pretiosum. The results demonstrate overlapping habitat suitability areas of the pest and the parasitoids, suggesting promises for biological control options for the management of FAW under current and future climate scenarios. Abstract: The present study is the first modeling effort at a global scale to predict habitat suitability of fall armyworm (FAW), Spodoptera frugiperda and its key parasitoids, namely Chelonus insularis, Cotesia marginiventris, Eiphosoma laphygmae, Telenomus remus and Trichogramma pretiosum, to be considered for biological control. An adjusted procedure of a machine-learning algorithm, the maximum entropy (Maxent), was applied for the modeling experiments. Model predictions showed particularly high establishment potential of the five hymenopteran parasitoids in areas that are heavily affected by FAW (like the coastal belt of West Africa from Côte d’Ivoire (Ivory Coast) to Nigeria, the Congo basin to Eastern Africa, Eastern, Southern and Southeastern Asia and some portions of Eastern Australia) and those of potential invasion risks (western & southern Europe). These habitats can be priority sites for scaling FAW biocontrol efforts. In the context of global warming and the event of accidental FAW introduction, warmer parts of Europe are at high risk. The effect of winter on the survival and life cycle of the pest in Europe and other temperate regions of the world are discussed in this paper. Overall, the models provide pioneering information to guide decision making for biological-based medium and long-term management of FAW across the globe.
Authors
Juliet Ochola Danny Coyne Laura Cortada Solveig Haukeland Margaret Ng'ang'a Ahmed Hassanali Charles Opperman Baldwyn TortoAbstract
Bio-communication occurs when living organisms interact with each other, facilitated by the exchange of signals including visual, auditory, tactile and chemical. The most common form of bio-communication between organisms is mediated by chemical signals, commonly referred to as ‘semiochemicals’, and it involves an emitter releasing the chemical signal that is detected by a receiver leading to a phenotypic response in the latter organism. The quality and quantity of the chemical signal released may be influenced by abiotic and biotic factors. Bio-communication has been reported to occur in both above- and below-ground interactions and it can be exploited for the management of pests, such as cyst nematodes, which are pervasive soil-borne pests that cause significant crop production losses worldwide. Cyst nematode hatching and successful infection of hosts are biological processes that are largely influenced by semiochemicals including hatching stimulators, hatching inhibitors, attractants and repellents. These semiochemicals can be used to disrupt interactions between host plants and cyst nematodes. Advances in RNAi techniques such as host-induced gene silencing to interfere with cyst nematode hatching and host location can also be exploited for development of synthetic resistant host cultivars.
Abstract
Plant-parasitic nematodes (PPN) cause significant yield reduction in commercial pineapple (Ananas comosus) worldwide. In Kenya, few nematode studies have been conducted, although the main commercial pineapple producer has sole dispensation to use Telone II (1,3-Dichloropropene) indicating the magnitude of the nematode problem. This study was conducted with the aim to investigate the population densities and diversity of nematodes in two commercial plantations with two contrasting management practices. We additionally assessed the influence of crop age and compared this with nearby smallholder pineapple production systems. Soil and root samples were collected from fields of different ages in each commercial plantation and from 29 smallholder fields. A total of 18 genera were associated with pineapple, with a relatively greater diversity found in smallholder than commercial farms. The most prevalent genus was Meloidogyne spp. (M. javanica) followed by Helicotylenchus spp., Tylenchus spp. and Aphelenchoides spp. PPN densities were higher in relatively older fields of 24 and 36 months than from fallow and 3-month-old fields. Regression analysis additionally demonstrated the rise of PPN densities with age of pineapple fields, especially Meloidogyne spp., while free-living nematode densities declined. This study provides an indication of the high level of PPN infection in pineapple in Kenya, which would constitute an important factor contributing to low yields. The study confirms an obvious need for pineapple producers to control PPN to improve crop yields.
Authors
James Kisaakye Hendrika Fourie Danny Coyne Laura Cortada Shirlyne Masinde Sevgan Subramanian Solveig HaukelandAbstract
The banana weevil (BW), Cosmopolites sordidus, is the main coleopteran pest of banana, causing up to 100% yield loss. In this study, we screened 20 isolates of entomopathogenic fungi (EPF) for the management of BW. In the lab, eight Beauveria bassiana isolates caused >50% mortality of the adult BW, whereas Metarhizium anisopliae and Isaria fumosorosea isolates were less pathogenic. B. bassiana isolates ICIPE 648, ICIPE 660 and ICIPE 273 were the most pathogenic, killing ≥80% of adult BW. B. bassiana isolate ICIPE 622 yielded the highest spores per BW cadaver (1.84 × 108 spores), followed by ICIPE 660, ICIPE 273 and ICIPE 648—1.17 × 108, 3.8 × 107 and 3.6 × 107 spores, respectively. ICIPE 273 had the shortest LT50 (5.3 days) followed by ICIPE 648 (9.8 days) and 660 (11.1 days). Similarly, the LC50 values for the three isolates were 5.18 × 107, 5.49 × 107 and 5.2 × 107 spores mL−1, respectively. In the field, ICIPE 273 and ICIPE 648 had the highest (31.3%) and lowest (20.8%) pathogenicity, respectively. This study indicates that the B. bassiana isolates ICIPE 273, ICIPE 648 and ICIPE 660 are potential candidates for the environmentally sustainable management of BW.
Authors
Annika Pieterse Ben Rowson Louwrens Tiedt Antoinette P. Malan Solveig Haukeland Jenna L. RossAbstract
A new species of Phasmarhabditis was isolated from the slug, Polytoxon robustum, from Nairobi, Kenya. The nematode was identified using morphological, morphometric, molecular and phylogenetic analyses. Phasmarhabditis kenyaensis n. sp. is characterised by an infective juvenile with the longest body length in the genus, measuring 1232 (1107-1336) μm, by the presence of males with a bursa bearing nine bilateral pairs of genital bursal papillae and one pair of papilliform phasmids flanking the tail, cephalate paired spicules, with an arc length of 71 (57-81) μm, as well as by females with a vulva located at the mid-body region and a conoid tail shape, with two phasmids located at ca 40% of the tail length. The molecular phylogeny of the new species, as inferred from its SSU (small subunit) rRNA gene, places P. kenyaensis n. sp. genetically close to undescribed phasmarhabditids from South Africa, suggesting an African grouping, while the D2-D3 (large ribosomal subunit) and ITS region analyses relate P. kenyaensis n. sp. to P. meridionalis, with weak bootstrap support. This is the third new Phasmarhabditis species described from the African continent, the new species bringing the total known complement of the genus to 14 species. A morphometric compendium to all species cultured in vivo is supplied.
Authors
Selamawit Araya Kidane Solveig Haukeland Beira H. Meressa Anne Kathrine Hvoslef-Eide Danny L. CoyneAbstract
Enset (Ensete ventricosum), is a perennial herbaceous plant belonging to the family Musaceae, along with banana and plantain. Despite wild populations occurring in eastern, central and southern Africa, it is only in Ethiopia that the crop has been domesticated, where it is culturally and agriculturally symbolic as a food security crop. Although an under-researched orphan crop, enset serves as a staple food for about 20% of the Ethiopian population, comprising more than 20 million people, demonstrating its value in the country. Similar to banana and plantain, enset is heavily affected by plant-parasitic nematodes, with recent studies indicating record levels of infection by the root lesion nematode Pratylenchus goodeyi. Enset is propagated vegetatively using suckers that are purposely initiated from the mother corm. However, while banana and plantain suckers have proven to be a key source of nematode infection and spread, knowledge on the infection levels and role of enset suckers in nematode dissemination is lacking. Given the high levels of plant-parasitic nematodes reported in previous surveys, it is therefore speculated that planting material may act as a key source of nematode dissemination. To address this lack of information, we assessed enset planting material in four key enset growing zones in Ethiopia. A total of 340 enset sucker samples were collected from farmers and markets and analyzed for the presence of nematodes. Nematodes were extracted using a modified Baermann method over a period of 48 h. The root lesion nematode P. goodeyi was present in 100% of the samples, at various levels of infection. These conclusive results show that planting material is indeed a key source of nematode infection in enset, hence measures taken to ensure clean suckers for planting will certainly mitigate nematode infection and spread. The effect of nematode infection on yield and quality on enset remains to be investigated and would be a way forward to complement the nematode/disease studies conducted so far and add valuable knowledge to the current poorly known impact of pests and diseases.
Abstract
Pratylenchus goodeyi appears to be the most prevalent nematode pest of enset in Ethiopia, where it can occur in extremely high densities. However, the damage to yield or how different enset cultivars react to the nematode has yet to be determined. The current study therefore sought to establish a first assessment of these reactions by enset to P. goodeyi infection. Determining pest resistant cultivars is an important task in developing management strategies. Our study evaluated nine enset cultivars to establish host response and identify potential sources of resistance. In addition, the pathogenicity of P. goodeyi was assessed on three enset cultivars. After 9 months’ growth, significant differences in final population densities (Pf) and reproduction factor (RF) were observed amongst the nine cultivars, with ‘Gefetanuwa’ the most susceptible (Pf = 25 799 and RF = 12.9), and similarly in a repeat experiment for 4.5 months (Pf = 126 534 and RF = 63.3). ‘Maziya’ and ‘Heila’ were the most resistant in the first experiment (Pf < 455 and RF < 0.2) as well as in the repeat, together with ‘Kellisa’ (Pf < 5255 and RF < 2.6). In the pathogenicity experiment four inoculum densities significantly affected the Pf and RF but not among the three cultivars ‘Maziya’, ‘Arkiya’ and ‘Heila’. This is the first known study to assess genotype reaction to P. goodeyi, which shows that there are significant differences in the reactions of different cultivars and that resistance appears to be present in enset.