Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2020
Authors
Simo Maduna Adam Vivian-Smith Ólöf Dóra Bartels Jónsdóttir Albert Imsland Cornelya Klutsch Tommi Nyman Hans Geir Eiken Snorre HagenAbstract
The lumpfish Cyclopterus lumpus is commercially exploited in numerous areas of its range in the North Atlantic Ocean, and is important in salmonid aquaculture as a biological agent for controlling sea lice. Despite the economic importance, few genetic resources for downstream applications, such as linkage mapping, parentage analysis, marker-assisted selection (MAS), quantitative trait loci (QTL) analysis, and assessing adaptive genetic diversity are currently available for the species. Here, we identify both genome- and transcriptome-derived microsatellites loci from C. lumpus to facilitate such applications. Across 2,346 genomic contigs, we detected a total of 3,067 microsatellite loci, of which 723 were the most suitable ones for primer design. From 116,555 transcriptomic unigenes, we identified a total of 231,556 microsatellite loci, which may indicate a high coverage of the available STRs. Out of these, primer pairs could only be designed for 6,203 loci. Dinucleotide repeats accounted for 89 percent and 52 percent of the genome- and transcriptome-derived microsatellites, respectively. The genetic composition of the dominant repeat motif types showed differences from other investigated fish species. In the genome-derived microsatellites AC/GT (67.8 percent), followed by AG/CT (15.1 percent) and AT/AT (5.6 percent) were the major motifs. Transcriptome-derived microsatellites showed also most dominantly the AC/GT repeat motif (33 percent), followed by A/T (26.6 percent) and AG/CT (11 percent). Functional annotation of microsatellite-containing transcriptomic sequences showed that the majority of the expressed sequence tags encode proteins involved in cellular and metabolic processes, binding activity and catalytic reactions. Importantly, STRs linked to genes involved in immune system process, growth, locomotion and reproduction were discovered in the present study. The extensive genomic marker information reported here will facilitate molecular ecology studies, conservation initiatives and will benefit many aspects of the breeding programmes of C. lumpus.
Authors
Melissa Magerøy Samuel W. Wilkinson Torstein Tengs Hugh Cross Marit Almvik Pierre Petriacq Adam Vivian-Smith Tao Zhao Carl Gunnar Fossdal Paal KrokeneAbstract
In response to various stimuli, plants acquire resistance against pests and/or pathogens. Such acquired or induced resistance allows plants to rapidly adapt to their environment. Spraying the bark of mature Norway spruce (Picea abies) trees with the phytohormone methyl jasmonate (MeJA) enhances resistance to tree‐killing bark beetles and their associated phytopathogenic fungi. Analysis of spruce chemical defenses and beetle colonization success suggests that MeJA treatment both directly induces immune responses and primes inducible defenses for a faster and stronger response to subsequent beetle attack. We used metabolite and transcriptome profiling to explore the mechanisms underlying MeJA‐induced resistance in Norway spruce. We demonstrated that MeJA treatment caused substantial changes in the bark transcriptional response to a triggering stress (mechanical wounding). Profiling of mRNA expression showed a suite of spruce inducible defenses are primed following MeJA treatment. Although monoterpenes and diterpene resin acids increased more rapidly after wounding in MeJA‐treated than control bark, expression of their biosynthesis genes did not. We suggest that priming of inducible defenses is part of a complex mixture of defense responses that underpins the increased resistance against bark beetle colonization observed in Norway spruce. This study provides the most detailed insights yet into the mechanisms underlying induced resistance in a long‐lived gymnosperm.
Abstract
Ornamental jewelweed (Impatiens glandulifera Royle) is an alien invasive plant in Europe. This annual plant often grows in riparian habitats where herbicides are prohibited. Several studies have reported the negative effect on ecosystem and ecosystem services by this species. However, limited research is published on control measures and the aim of our study was to explore use of hot water and cutting to control I. glandulifera. A lab experiment showed that the lethal water temperature for seed was between 45 and 50 C. In a pot experiment with seeds in soil, emergence of I. glandulifera was reduced by 78% and 93% compared with the untreated control with volumes of hot water (80 C) of 7.2 and 14.5 L m−2, respectively. When treatments were conducted on relatively tall plants (almost 60 cm) in late June, hot water gave significantly better control than cutting. Compared with an untreated control, I. glandulifera cover was reduced by 97% and 79% after hot water and cutting, respectively. Application of hot water to smaller (<40 cm) and less developed plants (BBCH 12–13) in early June and cutting of plants with visible flower buds (mid-July) led to no significant difference in cover. Compared with an untreated control, I. glandulifera cover was reduced by 99% (cut below first node) and 91% (hot water and cut above first node). When relatively tall plants (almost 60 cm) were treated, hot water use was high (31.1 L m−2) and required twice as many work hours (4.8 min m−2) as cutting (2.4 min m−2). When smaller plants (<40 cm) were targeted, work hours and hot water use were reduced to 2.1 min m−2 and 13.7 L m−2, respectively.
Abstract
Identification of stocktype attributes that speed up field establishment has potential to reduce rotation time of Christmas tree productions. Such morphological and physiological attributes can be targeted in the nursery production. This study tested the effects of container type and nursery seedling density on stocktype attributes at planting and the effects of these on field performance over two years in Abies lasiocarpa and A. nordmanniana Christmas tree stock. Nursery conditions had a considerable impact on seedling attributes at planting. Although sets of these correlated stocktype attributes contributed to forecast field performance, the predictive power was low. No simple relationships were found between plant biomass, stem diameter or height at planting and biomass at final harvest in either of the two species under the range of stocktype variation and field conditions tested. Contrary, stem diameter and stem height at planting explained some of the responses in stem diameter and height after two years in the field. Thus, any target seedling approach would have to be based on a combined set of stocktype attributes exploring more productive stocktypes. The differences observed between stocktypes were largely due to size differences and ontogenetic drift, and stocktypes converged towards a similar field phenotype over time.
Abstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
In integrated pest management (IPM), the goal is to keep the impact of damaging agents below a threshold level with reduced pesticide use. The present review is focusing on IPM of fungal diseases and Phytophthora root rot in Norwegian Christmas tree plantations. Healthy transplants are of vital importance to give the production a good establishment. Sanitation of diseased material and weeds is also very important in IPM. Management strategies will vary with the disease-causing agent in question, therefore, correct identification is necessary. The major pathogens are within the kingdom’s Fungi (e.g. Neonectria neomacrospora) and Chromista (e.g. Phytophthora spp.). They depend on relatively high humidity or free moisture to spread and infect. Any factors diminishing the duration of wet conditions will, therefore, reduce the disease pressure. Efficient weed management in Christmas tree fields will increase air circulation and thereby ensure a quicker drying after precipitation. Furthermore, certain weed species are host plants for rust fungi on Christmas trees, and thus, removal of the alternate host is a highly relevant control strategy. In Norway, fungicide use in Christmas trees is limited and only recommended during the short period from bud break to fully elongated shoots, generally the most vulnerable period concerning fungal attacks.
Authors
Guro Brodal Heidi Røsok Bye Eleonora Høst Martin Pettersson Inger Sundheim Fløistad Øyvind Meland Edvardsen Venche TalgøAbstract
Seedling blight caused by Sirococcus conigenus was recently reported on Norway spruce (Picea abies) from Norwegian forest nurseries. The inoculum source was found to be infected seeds. In a Petri dish assay, the fungicide fludioxonil + difenoconazole was, among other fungicides, found to inhibit mycelial growth of S. conigenus. This fungicide is formulated as a seed treatment and registered for cereals in Norway, and was chosen for an experiment to control S. conigenus on Norway spruce seeds. Samples from two naturally infected seed lots were treated with half, normal and double dose of the recommended rate for cereals. Together with untreated control samples, treated seeds were tested in the laboratory for efficacy against S. conigenus on potato dextrose agar (PDA) in Petri dishes and for germination potential on filter paper. We also recorded seed emergence in soil of one of the seed lots in a growth chamber and in a forest nursery. On agar, the fungus was not detected after seed treatment with fludioxonil + difenoconazole at any of the three dosages, but it was present in the control. Germination on filter paper and emergence in soil was high in both treated and untreated control seeds with no signs of detrimental effects from any of the three fungicide doses.
Authors
Martin Pettersson Venche Talgø Odd Ragnar Johnskås Jan-Ole Skage Torfinn Torp Inger Sundheim FløistadAbstract
Norway spruce (Picea abies) is a widely used Christmas tree species in the Nordic countries. Postharvest needle retention is an important characteristic for Christmas trees and compared to many fir (Abies) species, Norway spruce has poor postharvest needle retention. This trait is one of the most important qualities in choice of natural versus plastic trees. In this study, current year shoots were cut from 30 Norway spruce seedlot sources, including the most widely used Norwegian Christmas tree provenances, and tested to identify genetic variation in postharvest needle retention. Current year shoots were collected from one field in November and December 2018, and from three fields in October, November and December 2019. The current year shoots were displayed indoors under controlled conditions and allowed to dry. Differences in postharvest needle retention were seen between seedlots, harvesting dates and locations. Our study indicates possibilities of selecting for improved postharvest needle retention in Norway spruce seed sources. Furthermore, postharvest needle retention should be considered as one characteristic to add in the ongoing Norway spruce Christmas tree breeding program.
2019
Abstract
No abstract has been registered