Adam Vivian-Smith
Research Scientist
Authors
Dalphy Ondine Camira Harteveld Abdelhameed Elameen Simo Maduna Adam Vivian-Smith Andrea Podavkova Sabine Oettl Stefanie Maria Primisser Jorunn BørveAbstract
Small, superficial rot spots occurring around lenticels postharvest on apple in Norway have not been identified but were assumed to be underdeveloped Neofabraea lesions. Fungal isolation from such spots on fruit from the 2022 season revealed both Neofabraea perennans and Ramularia spp., identified by B-tubulin and ITS sequencing, respectively. In the 2023 season, isolations were made from fruit with spots resembling dry lenticel spot caused by Ramularia mali. The aim of this study was to identify the Ramularia species associated with the postharvest fruit spots in Norway. Multiple gene regions of five Norwegian isolates (E20, E21 from 2022; 13,15 and 18 from 2023) and three reference isolates, R. mali, R. eucalypti, and R. collo-cygni, were sequenced and used for phylogenetic analysis. The Norwegian isolates were distinct from the included reference isolates, but clustered with other Ramularia species. Isolates 13, 18 and E21 clustered with Ramularia vizellae, while isolates 15 and E20 were most closely related to Ramularia phacae-frigidae. Isolate E20 was sequenced using the Oxford Nanopore Technologies MinION platform. Pathogenicity was assessed in a field inoculation study using isolate E21, resulting in typical spot development on inoculated fruit. Ramularia vizellae has previously been reported from dead apple leaf litter and other woody hosts in the Netherlands and Iran, while R. phacae-frigidae was originally described from Phaca frigida in Switzerland. Neither species has previously been reported in association with apple fruit spotting. While Ramularia mali has caused outbreaks on apple in several European countries, recent studies hypothesize that the symptoms may be caused by a species complex with regional variation. The present results identify candidate species contributing to this complex in Norway and highlight the need for further studies to improve species delimitation and pathogenicity.
Authors
Anders Ræbild Kesara Anamthawat-Jónsson Ulrika Egertsdotter Juha Immanen Anna Monrad Jensen Athina Koutouleas Helle Jakobe Martens Kaisa Nieminen Jill Katharina Olofsson Anna-Catharina Röper Jarkko Salojärvi Martina Strömvik Mohammad Vatanparast Adam Vivian-SmithAbstract
Polyploidy, or genome doubling, has occurred repeatedly through plant evolution. While polyploid plants are used extensively in agriculture and horticulture, they have so far found limited use in forestry. Here we review the potentials of polyploid trees under climate change, and investigate if there is support for increased use. We find that polyploid trees like other plants have consistent increases in cell sizes compared to diploids, and that leaf-area based rates of photosynthesis tend to increase with increasing levels of ploidy. While no particular trend could be discerned in terms of biomass between trees of different ploidy levels, physiology is affected by polyploidization and several studies point towards a high potential for polyploid trees to adapt to drought stress. The ploidy level of most tree species is unknown, and analysis of geographical patterns in frequencies of polyploid trees are inconclusive. Artificial polyploid trees are often created by colchicine and in a few cases these have been successfully applied in forestry, but the effects of induced polyploidization in many economically important tree species remains untested. Polyploids would also be increasingly useful in tree breeding programs, to create synthetic hybrids or sterile triploids that could control unwanted spreading of germplasm in nature. In conclusion, this review suggests that polyploid trees may be superior under climate change in some cases, but that the potential of polyploids is not yet fully known and should be evaluated on a case-to-case basis for different tree species.
Authors
Simo Maduna Adam Vivian-Smith Ólöf Dóra Bartels Jónsdóttir Albert Imsland Cornelya Klutsch Tommi Nyman Hans Geir Eiken Snorre HagenAbstract
We determined the mitogenome of Cyclopterus lumpus using a hybrid sequencing approach, and another four closely related species in the Liparidae based on available next-generation sequence data. We found that the mitogenome of C. lumpus was 17,266 bp in length, where the length and organisation were comparable to those reported for cottoids. However, we found a GC-homopolymer region in the intergenic space between tRNALeu2 and ND1 in liparids and cyclopterids. Phylogenetic reconstruction confirmed the monophyly of infraorders and firmly supported a sister-group relationship between Cyclopteridae and Liparidae. Purifying selection was the predominant force in the evolution of cottoid mitogenomes. There was significant evidence of relaxed selective pressures along the lineage of deep-sea fish, while selection was intensified in the freshwater lineage. Overall, our analysis provides a necessary expansion in the availability of mitogenomic sequences and sheds light on mitogenomic adaptation in Cottoidei fish inhabiting different aquatic environments.