Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
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Anna Birgitte MilfordAbstract
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Yupeng Zhang Tuomas Toivainen Kathryn Mackenzie Igor A. Yakovlev Paal Krokene Timo Hytönen Paul Grini Carl Gunnar FossdalAbstract
Temperature conditions experienced during embryogenesis and seed development may induce epigenetic changes that increase phenotypic variation in plants. Here we investigate if embryogenesis and seed development at two different temperatures (28 vs. 18°C) result in lasting phenotypic effects and DNA methylation changes in woodland strawberry (Fragaria vesca). Using five European ecotypes from Spain (ES12), Iceland (ICE2), Italy (IT4), and Norway (NOR2 and NOR29), we found statistically significant differences between plants from seeds produced at 18 or 28°C in three of four phenotypic features investigated under common garden conditions. This indicates the establishment of a temperature-induced epigenetic memory-like response during embryogenesis and seed development. The memory effect was significant in two ecotypes: in NOR2 flowering time, number of growth points and petiole length were affected, and in ES12 number of growth points was affected. This indicates that genetic differences between ecotypes in their epigenetic machinery, or other allelic differences, impact this type of plasticity. We observed statistically significant differences between ecotypes in DNA methylation marks in repetitive elements, pseudogenes, and genic elements. Leaf transcriptomes were also affected by embryonic temperature in an ecotype-specific manner. Although we observed significant and lasting phenotypic change in at least some ecotypes, there was considerable variation in DNA methylation between individual plants within each temperature treatment. This within-treatment variability in DNA methylation marks in F. vesca progeny may partly be a result of allelic redistribution from recombination during meiosis and subsequent epigenetic reprogramming during embryogenesis.
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Paal Krokene Isabella Børja Elena Carneros Toril Drabløs Eldhuset Nina Elisabeth Nagy Daniel Volařík Roman GebauerAbstract
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Leonor Rodrigues Alice Budai Lars Elsgaard Brieuc Hardy Sonja G. Keel Claudio Mondini Cesar Plaza Jens LeifeldAbstract
Biochar is a carbon (C)-rich material produced from biomass by anoxic or oxygen-limited thermal treatment known as pyrolysis. Despite substantial gaseous losses of C during pyrolysis, incorporating biochar in soil has been suggested as an effective long-term option to sequester CO2 for climate change mitigation, due to the intrinsic stability of biochar C. However, no universally applicable approach that combines biochar quality and pyrolysis yield into an overall metric of C sequestration efficiency has been suggested yet. To ensure safe environmental use of biochar in agricultural soils, the International Biochar Initiative and the European Biochar Certificate have developed guidelines on biochar quality. In both guidelines, the hydrogen-to-organic C (H/Corg) ratio is an important quality criterion widely used as a proxy of biochar stability, which has been recognized also in the new EU regulation 2021/2088. Here, we evaluate the biochar C sequestration efficiency from published data that comply with the biochar quality criteria in the above guidelines, which may regulate future large-scale field application in practice. The sequestration efficiency is calculated from the fraction of biochar C remaining in soil after 100 years (Fperm) and the C-yield of various feedstocks pyrolyzed at different temperatures. Both parameters are expressed as a function of H/Corg. Combining these two metrics is relevant for assessing the mitigation potential of the biochar economy. We find that the C sequestration efficiency for stable biochar is in the range of 25%–50% of feedstock C. It depends on the type of feedstock and is in general a non-linear function of H/Corg. We suggest that for plant-based feedstock, biochar production that achieves H/Corg of 0.38–0.44, corresponding to pyrolysis temperatures of 500–550°C, is the most efficient in terms of soil carbon sequestration. Such biochars reveal an average sequestration efficiency of 41.4% (±4.5%) over 100 years.
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No abstract has been registered
Authors
Mekjell Meland Mirjam Vujadinović Mandić Ana Vuković Vimić Milica Fotirić AkšićAbstract
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Authors
Yupeng Zhang Marcos Viejo Igor A. Yakovlev Torstein Tengs Paal Krokene Timo Hytönen Paul Grini Carl Gunnar FossdalAbstract
A major challenge for plants in a rapidly changing climate is to adapt to rising temperatures. Some plants adapt to temperature conditions by generating an epigenetic memory that can be transmitted both meiotically and mitotically. Such epigenetic memories may increase phenotypic variation to global warming and provide time for adaptation to occur through classical genetic selection. The goal of this study was to understand how warmer temperature conditions experienced during sexual and asexual reproduction affect the transcriptomes of different strawberry (Fragaria vesca) ecotypes. We let four European F. vesca ecotypes reproduce at two contrasting temperatures (18 and 28°C), either asexually through stolon formation for several generations, or sexually by seeds (achenes). We then analyzed the transcriptome of unfolding leaves, with emphasis on differential expression of genes belonging to the epigenetic machinery. For asexually reproduced plants we found a general transcriptomic response to temperature conditions but for sexually reproduced plants we found less significant responses. We predicted several splicing isoforms for important genes (e.g. a SOC1, LHY, and SVP homolog), and found significantly more differentially presented splicing event variants following asexual vs. sexual reproduction. This difference could be due to the stochastic character of recombination during meiosis or to differential creation or erasure of epigenetic marks during embryogenesis and seed development. Strikingly, very few differentially expressed genes were shared between ecotypes, perhaps because ecotypes differ greatly both genetically and epigenetically. Genes related to the epigenetic machinery were predominantly upregulated at 28°C during asexual reproduction but downregulated after sexual reproduction, indicating that temperature-induced change affects the epigenetic machinery differently during the two types of reproduction.
Authors
Marcos Viejo Torstein Tengs Igor A. Yakovlev Hugh Cross Paal Krokene Jorunn Elisabeth Olsen Carl Gunnar FossdalAbstract
No abstract has been registered
Authors
Lisa Paruch Adam Paruch Iulia Elena Neblea Tanta-Verona Iordache Andreea Gabriela Olaru Anita-Laura Chiriac Andrei SarbuAbstract
No abstract has been registered