Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Dario Isidro Ojeda Alayon Max John Robert L. Hammond Riitta Savolainen Kari Vepsäläinen Torstein KvammeAbstract
The Formicoxenus genus-group comprises six genera within the tribe Crematogastrini. The group is well known for repeated evolution of social parasitism among closely related taxa and cold-adapted species with large distribution ranges in the Nearctic and Palearctic regions. Previous analyses based on nuclear markers (ultraconserved elements, UCEs) and mitochondrial genes suggest close relationship between Formicoxenus Mayr, 1855, Leptothorax Mayr, 1855 and Harpagoxenus Forel, 1893. However, scant sampling has limited phylogenetic assessment of these genera. Also, previous phylogeographic analyses of L. acervorum (Fabricius, 1793) have been limited to its West-Palearctic range of distribution, which has provided a narrow view on recolonization, population structure and existing refugia of the species. Here, we inferred the phylogenenetic history of genera within the Formicoxenus genus-group and reconstructed the phylogeography of L. acervorum with more extensive sampling. We employed three datasets, one data set consisting of whole mitochondrial genomes, and two data sets of sequences of the COI-5P (658 bp) with different number of specimens. The topologies of previous nuclear and our inferences based on mitochondrial genomes were overall congruent. Further, Formicoxenus may not be monophyletic. We found several monophyletic lineages that do not correspond to the current species described within Leptothorax, especially in the Nearctic region. We identified a monophyletic L. acervorum lineage that comprises both Nearctic and Palearctic locations. The most recent expansion within L. acervorum probably occurred within the last 0.5 Ma with isolated populations predating the Last Glacial Maximum (LGM), which are localized in at least two refugial areas (Pyrenean and Northern plateau) in the Iberian Peninsula. The patterns recovered suggest a shared glacial refugium in the Iberian Peninsula with cold-adapted trees that currently share high-altitude environments in this region.
Authors
Arne Stensvand Natalia A. Peres David M. Gadoury Belachew Asalf Tadesse Aruppillai SuthaparanAbstract
No abstract has been registered
Abstract
The efficacy of currently available fungicides against apple scab, caused by the fungal pathogen Venturia inaequalis, was investigated in relation to when growers spray (ahead, during, or after rain) and how the spray reaches the target. The adaxial surface of individual leaves of potted trees were sprayed and then inoculated with ascospores of V. inaequalis, to establish dose-response curves for each fungicide. Discriminatory doses providing 50 and 90% symptom inhibition (EC50 and EC90, respectively) in sprays mimicking applications ahead of rain were used for experiments imitating alternative spray timings. Sprays were either applied during the spore germination phase or early or late after infection onset (either 336 or 672 degree-hours after inoculation, respectively), corresponding to grower spray schedules. Experiments were also carried out with sprays applied on the abaxial leaf surface to investigate fungicide efficacy through the leaf lamina. For all fungicides, the best efficacy was observed when sprays were applied during germination, followed by applications ahead of inoculation. Some products maintained equal or better efficacy at early infection, while efficacy in late infection dropped for all products, clearly indicating that this spray timing should be avoided. Some products with postinfection efficacy also showed translaminar efficacy. The close relationship found between EC50 of the active ingredients on potted trees and the label rate could help improve spraying decisions and reduce costs.
Authors
Paul Eric Aspholm Simo Maduna Juho Vuolteenaho Cornelya Klutsch Hallvard Jensen Ida Marie Bardalen Fløystad Ingrid Helle Søvik Ane-Sofie Bednarczyk Hansen Josefine Bergs Benedicte Beddari Helena Klöckener Snorre HagenAbstract
No abstract has been registered
Authors
Melissa MagerøyAbstract
Epigenetic modification is an important mechanism that allows plants to rapidly adapt to changes in environment. This modification can provide long-term increased tolerance and resistance to abiotic and biotic stress and may even be transmittable to progeny. Knowledge on how epigenetic memory is established, maintained, triggered, and transmitted in plants with different evolutionary and life histories is important for understanding and utilizing epigenetic adaptation in plant protection. In this symposium, we welcome talks from those that provide insight into the molecular mechanism underlying epigenetic memory to those that present the practical aspects of implementing epigenetic adaptation in the field.
Authors
M.L. Robinson P.G. Hahn B.D. Inouye N. Underwood S.R. Whitehead K.C. Abbott E.M. Bruna N.I. Cacho L.A. Dyer L. Abdala-Roberts W.J. Allen J.F. Andrade D.F. Angulo D. Anjos D.N. Anstett R. Bagchi S. Bagchi M. Barbosa S. Barrett C.A. Baskett E. Ben-Simchon K.J. Bloodworth J.L. Bronstein Y.M. Buckley K.T. Burghardt C. Bustos-Segura E.S. Calixto R.L. Carvalho B. Castagneyrol M.C. Chiuffo D. Cinoğlu E. Cinto Mejía M.C. Cock R. Cogni O.L. Cope T. Cornelissen D.R. Cortez D.W. Crowder C. Dallstream W. Dáttilo J.K. Davis R.D. Dimarco H.E. Dole I.N. Egbon M. Eisenring A. Ejomah B.D. Elderd Joshua Lynn Anne Muola Vigdis VandvikAbstract
Interactions between plants and herbivores are central in most ecosystems, but their strength is highly variable. The amount of variability within a system is thought to influence most aspects of plant-herbivore biology, from ecological stability to plant defense evolution. Our understanding of what influences variability, however, is limited by sparse data. We collected standardized surveys of herbivory for 503 plant species at 790 sites across 116° of latitude. With these data, we show that within-population variability in herbivory increases with latitude, decreases with plant size, and is phylogenetically structured. Differences in the magnitude of variability are thus central to how plant-herbivore biology varies across macroscale gradients. We argue that increased focus on interaction variability will advance understanding of patterns of life on Earth.
Abstract
No abstract has been registered
Authors
Hang Su Andre van Eerde Espen Rimstad Ralph Bock Norica Branza-Nichita Igor A. Yakovlev Jihong Liu ClarkeAbstract
Plants provide not only food and feed, but also herbal medicines and various raw materials for industry. Moreover, plants can be green factories producing high value bioproducts such as biopharmaceuticals and vaccines. Advantages of plant-based production platforms include easy scale-up, cost effectiveness, and high safety as plants are not hosts for human and animal pathogens. Plant cells perform many post-translational modifications that are present in humans and animals and can be essential for biological activity of produced recombinant proteins. Stimulated by progress in plant transformation technologies, substantial efforts have been made in both the public and the private sectors to develop plant-based vaccine production platforms. Recent promising examples include plant-made vaccines against COVID-19 and Ebola. The COVIFENZ® COVID-19 vaccine produced in Nicotiana benthamiana has been approved in Canada, and several plant-made influenza vaccines have undergone clinical trials. In this review, we discuss the status of vaccine production in plants and the state of the art in downstream processing according to good manufacturing practice (GMP). We discuss different production approaches, including stable transgenic plants and transient expression technologies, and review selected applications in the area of human and veterinary vaccines. We also highlight specific challenges associated with viral vaccine production for different target organisms, including lower vertebrates (e.g., farmed fish), and discuss future perspectives for the field.
Abstract
No abstract has been registered
Abstract
Inthis study, we introduce Point2Tree, a modular and versatile framework that employs a three-tiered methodology, inclusive of semantic segmentation, instance segmentation, and hyperparameter optimization analysis, designed to process laser point clouds in forestry. The semantic segmentation stage is built upon the Pointnet++ architecture and is primarily tasked with categorizing each point in the point cloud into meaningful groups or ’segments’, specifically in this context, differentiating between diverse tree parts, i.e., vegetation, stems, and coarse woody debris. The category for the ground is also provided. Semantic segmentation achieved an F1-score of 0.92, showing a high level of accuracy in classifying forest elements. In the instance segmentation stage, we further refine this process by identifying each tree as a unique entity. This process, which uses a graph-based approach, yielded an F1-score of approximately 0.6, signifying reasonable performance in delineating individual trees. The third stage involves a hyperparameter optimization analysis, conducted through a Bayesian strategy, which led to performance improvement of the overall framework by around four percentage points. Point2Tree was tested on two datasets, one from a managed boreal coniferous forest in Våler, Norway, with 16 plots chosen to cover a range of forest conditions. The modular design of the framework allows it to handle diverse pointcloud densities and types of terrestrial laser scanning data.