Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2024
Authors
Sara A Meier Melanie Furrer Nora Nowak Renato Zenobi Monica Alterskjær Sundset Reto Huber Steven A Brown Gabriela WagnerAbstract
Reindeer in the Arctic seasonally suppress daily circadian patterns of behavior present in most animals. In humans and mice, even when all daily behavioral and environmental influences are artificially suppressed, robust endogenous rhythms of metabolism governed by the circadian clock persist and are essential to health. Disrupted rhythms foster metabolic disorders and weight gain. To understand circadian metabolic organization in reindeer, we performed behavioral measurements and untargeted metabolomics from blood plasma samples taken from Eurasian tundra reindeer (Rangifer tarandus tarandus) across 24 h at 2-h intervals in four seasons. Our study confirmed the absence of circadian rhythms of behavior under constant darkness in the Arctic winter and constant daylight in the Arctic summer, as reported by others.1 We detected and measured the intensity of 893 metabolic features in all plasma samples using untargeted ultra-high-performance liquid chromatography-mass spectrometry (UPLC-MS). A core group of metabolites (66/893 metabolic features) consistently displayed 24-h rhythmicity. Most metabolites displayed a robust 24-h rhythm in winter and spring but were arrhythmic in summer and fall. Half of all measured metabolites displayed ultradian sleep-wake dependence in summer. Irrespective of the arrhythmic behavior, metabolism is rhythmic (24 h) in seasons of low food availability, potentially favoring energy efficiency. In seasons of food abundance, 24-h rhythmicity in metabolism is drastically reduced, again irrespective of behavioral rhythms, potentially fostering weight gain.
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Authors
Abirami Ramu GanesanAbstract
Horticultural food waste can be recovered to produce high-value products. Appropriate green solvents and a selection of cleaner production could unlock waste into useful resources for human health. This will significantly reduce greenhouse gas emissions, and CO2 production, and create economic opportunities to contribute to food security.
Authors
Isabella BørjaAbstract
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Housing and indoor feeding of sheep is required throughout the cold season, which can last more than half a year, in Nordic highlands and Alpine regions. This study aimed to examine and evaluate the housing costs, including labour requirements, according to type of sheep housing system and degree of mechanized feeding by investigating systems commonly used in Nordic and Alpine regions. Detailed cost data were obtained from 61 surveyed sheep farmers in Norway with sheep houses built between the years 2008 and 2015. Costs were calculated for a baseline scenario (2021-prices) as well as for five scenarios at low and high discount rates and opportunity cost of labour, and high energy prices. The median (interquartile range) flock size was 150 (100) winter-fed sheep. Houses with slatted floors were more expensive than deep-litter systems. Costs of bedding material and feed waste were however higher, and the net value of the manure were lower in houses with deeplitter systems. At the baseline assumptions, overall net housing costs per sheep was not statistically different among the main housing types studied. Multiple regression analyses showed that net housing costs per sheep were lower in larger flocks and for centrally located farms (control variables). Undertaking daily chores, such as feeding of roughages twice a day rather than once, resulted in significantly higher net housing costs. Mechanized feeding of roughages, and even more so for concentrates, were not economically justified since labour savings were not sufficient to pay for the additional capital costs. A round bale chopper lowered net housing costs, significantly at a high labour cost. None of the scenarios found slatted floors to be significantly more expensive than deep-litter systems. High costs of labour and capital favoured deep-litter systems, while slatted floor systems were more advantageous at rising prices of energy that resulted in increased values of organic manures and costs of feed wastes and bedding materials. The study was based on a decade old data from common Norwegian sheep house variants. Farmers that consider constructing a new sheep house today, still must compare these variants as their main alternatives. We encourage other researchers to include effects of housing systems and mechanized feeding on animal performance, health, and welfare. Moreover, future studies should preferably also be undertaken in other environmental or socio-economic settings to produce more general results.
2023
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Authors
Claire CoutrisAbstract
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Authors
Tomás Brůna Rishi Aryal Olga Dudchenko Daniel James Sargent Daniel Mead Matteo Buti Andrea Cavallini Timo Hytönen Javier Andrés Melanie Pham David Weisz Flavia Mascagni Gabriele Usai Lucia Natali Nahla Bassil Gina E. Fernandez Alexandre Lomsadze Mitchell Armour Bode Olukolu Thomas Poorten Caitlin Britton Jahn Davik Hamid Ashrafi Erez Lieberman Aiden Mark Borodovsky Margaret WorthingtonAbstract
Blackberries (Rubus spp.) are the fourth most economically important berry crop worldwide. Genome assemblies and annotations have been developed for Rubus species in subgenus Idaeobatus, including black raspberry (R. occidentalis), red raspberry (R. idaeus), and R. chingii, but very few genomic resources exist for blackberries and their relatives in subgenus Rubus. Here we present a chromosomelength assembly and annotation of the diploid blackberry germplasm accession “Hillquist” (R. argutus). “Hillquist” is the only known source of primocane-fruiting (annual-fruiting) in tetraploid fresh-market blackberry breeding programs and is represented in the pedigree of many important cultivars worldwide. The “Hillquist” assembly, generated using Pacific Biosciences long reads scaffolded with high-throughput chromosome conformation capture sequencing, consisted of 298Mb, of which 270Mb (90%) was placed on 7 chromosome-length scaffolds with an average length of 38.6Mb. Approximately 52.8% of the genome was composed of repetitive elements. The genome sequence was highly collinear with a novel maternal haplotype-resolved linkage map of the tetraploid blackberry selection A-2551TN and genome assemblies of R. chingii and red raspberry. A total of 38,503 protein-coding genes were predicted, of which 72% were functionally annotated. Eighteen flowering gene homologs within a previously mapped locus aligning to an 11.2Mb region on chromosome Ra02 were identified as potential candidate genes for primocane-fruiting. The utility of the “Hillquist” genome has been demonstrated here by the development of the first genotyping-by-sequencing-based linkage map of tetraploid blackberry and the identification of possible candidate genes for primocane-fruiting. This chromosome-length assembly will facilitate future studies in Rubus biology, genetics, and genomics and strengthen applied breeding programs.