Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Carl Gunnar Fossdal Igor A. Yakovlev Marcos Viejo Paul Grini Paal Krokene Yupeng Zhang Jorunn Elisabeth OlsenAbstract
No abstract has been registered
Authors
Yupeng Zhang Tuomas Toivainen Kathryn Mackenzie Igor A. Yakovlev Paal Krokene Timo Hytönen Paul Grini Carl Gunnar FossdalAbstract
Temperature conditions experienced during embryogenesis and seed development may induce epigenetic changes that increase phenotypic variation in plants. Here we investigate if embryogenesis and seed development at two different temperatures (28 vs. 18°C) result in lasting phenotypic effects and DNA methylation changes in woodland strawberry (Fragaria vesca). Using five European ecotypes from Spain (ES12), Iceland (ICE2), Italy (IT4), and Norway (NOR2 and NOR29), we found statistically significant differences between plants from seeds produced at 18 or 28°C in three of four phenotypic features investigated under common garden conditions. This indicates the establishment of a temperature-induced epigenetic memory-like response during embryogenesis and seed development. The memory effect was significant in two ecotypes: in NOR2 flowering time, number of growth points and petiole length were affected, and in ES12 number of growth points was affected. This indicates that genetic differences between ecotypes in their epigenetic machinery, or other allelic differences, impact this type of plasticity. We observed statistically significant differences between ecotypes in DNA methylation marks in repetitive elements, pseudogenes, and genic elements. Leaf transcriptomes were also affected by embryonic temperature in an ecotype-specific manner. Although we observed significant and lasting phenotypic change in at least some ecotypes, there was considerable variation in DNA methylation between individual plants within each temperature treatment. This within-treatment variability in DNA methylation marks in F. vesca progeny may partly be a result of allelic redistribution from recombination during meiosis and subsequent epigenetic reprogramming during embryogenesis.
Abstract
No abstract has been registered
Authors
Marcos Viejo Torstein Tengs Igor A. Yakovlev Hugh Cross Paal Krokene Jorunn Elisabeth Olsen Carl Gunnar FossdalAbstract
An epigenetic memory of the temperature sum experienced during embryogenesis is part of the climatic adaptation strategy of the long-lived gymnosperm Norway spruce. This memory has a lasting effect on the timing of bud phenology and frost tolerance in the resulting epitype trees. The epigenetic memory is well characterized phenotypically and at the transcriptome level, but to what extent DNA methylation changes are involved have not previously been determined. To address this, we analyzed somatic epitype embryos of Norway spruce clones produced at contrasting epitype-inducing conditions (18 and 28°C). We screened for differential DNA methylation in 2744 genes related mainly to the epigenetic machinery, circadian clock, and phenology. Of these genes, 68% displayed differential DNA methylation patterns between contrasting epitype embryos in at least one methylation context (CpG, CHG, CHH). Several genes related to the epigenetic machinery (e.g., DNA methyltransferases, ARGONAUTE) and the control of bud phenology (FTL genes) were differentially methylated. This indicates that the epitype-inducing temperature conditions induce an epigenetic memory involving specific DNA methylation changes in Norway spruce.
Abstract
No abstract has been registered
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No abstract has been registered
Authors
Heidi Udnes Aamot Hesam Mousavi Jafar Razzaghian Guro Brodal Michael Sulyok Rudolf Krska Simon G. Edwards Ingerd Skow HofgaardAbstract
In Norway, high levels of mycotoxins are occasionally observed in oat grain lots, and this cause problems for growers, livestock producers and the food and feed industries. Mycotoxins of primary concern are deoxynivalenol (DON) produced by Fusarium graminearum and HT2- and T2-toxins (HT2+T2) produced by Fusarium langsethiae. Although effort has been made to understand the epidemiology of F. langsethiae in oats, this is still not fully understood. In the present study, we aimed to increase our understanding of the F. langsethiae – oat interaction. Resistance to F. langsethiae was studied in three oat varieties after inoculation at early (booting, heading, flowering) or late (flowering, milk, dough) growth stages in greenhouse experiments. The oat varieties had previously shown different levels of resistance to F. graminearum: Odal, Vinger (both moderately resistant), and Belinda (susceptible). The levels of F. langsethiae DNA and HT2+T2 in harvested grain were measured, and differences in aggressiveness (measured as the level of F. langsethiae DNA in grain) between F. langsethiae isolates were observed. Substantial levels of F. langsethiae DNA and HT2+T2 were detected in grain harvested from oats that had been spray-inoculated at heading or later growth stages, suggesting that oats are susceptible to F. langsethiae from heading and onwards. Vinger had a moderate resistance to F. langsethiae/HT2+T2, whereas Odal and Belinda were relatively susceptible. We observed that late inoculations resulted in relatively higher levels of trichothecene A metabolites other than HT2+T2 (mostly glycosylated HT-2, and smaller amounts of some other metabolites) in harvested grain, which indicate that infections close to harvest may pose a further risk to food and feed safety.
Authors
Igor Koloniuk Jana Fránová Jaroslava Pribylová Tatiana Sarkisova Josef Špak Jiunn Luh Tan Rostislav Zemek Radek Cmejla Martina Rejlová Lucie Valentová Jiri Sedlák Jan Holub Jan Skalik Dag-Ragnar Blystad Bijaya Sapkota Zhibo HamborgAbstract
Raspberry plants, valued for their fruits, are vulnerable to a range of viruses that adversely affect their yield and quality. Utilizing high-throughput sequencing (HTS), we identified a novel virus, tentatively named raspberry enamovirus 1 (RaEV1), in three distinct raspberry plants. This study provides a comprehensive characterization of RaEV1, focusing on its genomic structure, phylogeny, and possible transmission routes. Analysis of nearly complete genomes from 14 RaEV1 isolates highlighted regions of variance, particularly marked by indel events. The evidence from phylogenetic and sequence analyses supports the classification of RaEV1 as a distinct species within the Enamovirus genus. Among the 289 plant and 168 invertebrate samples analyzed, RaEV1 was detected in 10.4% and 0.4%, respectively. Most detections occurred in plants that were also infected with other common raspberry viruses. The virus was present in both commercial and wild raspberries, indicating the potential of wild plants to act as viral reservoirs. Experiments involving aphids as potential vectors demonstrated their ability to acquire RaEV1 but not to successfully transmit it to plants.
Abstract
Purpose of Review Forestry in northern temperate and boreal regions relies heavily on conifers. Rapid climate change and associated increases in adverse growing conditions predispose conifers to pathogens and pests. The much longer generation time and presumably, therefore, lower adaptive capacity of conifers relative to their native or non-native biotic stressors may have devastating consequences. We provide an updated overview of conifer defences underlying pathogen and pest resistance and discuss how defence traits can be used in tree breeding and forest management to improve resistance. Recent Findings Breeding of more resilient and stress-resistant trees will benefit from new genomic tools, such as genotyping arrays with increased genomic coverage, which will aid in genomic and relationship-based selection strategies. However, to successfully increase the resilience of conifer forests, improved genetic materials from breeding programs must be combined with more flexible and site-specific adaptive forest management. Summary Successful breeding programs to improve conifer resistance to pathogens and pests provide hope as well as valuable lessons: with a coordinated and sustained effort, increased resistance can be achieved. However, mechanisms underlying resistance against one stressor, even if involving many genes, may not provide any protection against other sympatric stressors. To maintain the adaptive capacity of conifer forests, it is important to keep high genetic diversity in the tree breeding programs. Choosing forest management options that include diversification of tree-species and forest structure and are coupled with the use of genetically improved plants and assisted migration is a proactive measure to increase forest resistance and resilience to foreseen and unanticipated biotic stressors in a changing climate.