Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2021
Abstract
1. It is common practice for ecologists to examine species niches in the study of community composition. The response curve of a species in the fundamental niche is usually assumed to be quadratic. The centre of a quadratic curve represents a species' optimal environmental conditions, and the width its ability to tolerate deviations from the optimum. 2. Most multivariate methods assume species respond linearly to niche axes, or with a quadratic curve that is of equal width for all species. However, it is widely understood that some species have the ability to better tolerate deviations from their optimal environment (generalists) compared to other (specialist) species. Rare species often tolerate a smaller range of environments than more common species, corresponding to a narrow niche. 3. We propose a new method, for ordination and fitting Joint Species Distribution Models, based on Generalized Linear Mixed-effects Models, which relaxes the assumptions of equal tolerances. 4. By explicitly estimating species maxima, and species optima and tolerances per ecological gradient, we can better explore how species relate to each other.
Authors
Christophe Pelabon Elena Albertsen Arnaud Le Rouzic Cyril Firmat Geir Hysing Bolstad W. Scott Armbruster Thomas Fredrik HansenAbstract
Although artificial-selection experiments seem well suited to testing our ability to predict evolution, the correspondence between predicted and observed responses is often ambiguous due to the lack of uncertainty estimates. We present equations for assessing prediction error in direct and indirect responses to selection that integrate uncertainty in genetic parameters used for prediction and sampling effects during selection. Using these, we analyzed a selection experiment on floral traits replicated in two taxa of the Dalechampia scandens (Euphorbiaceae) species complex for which G-matrices were obtained from a diallel breeding design. After four episodes of bidirectional selection, direct and indirect responses remained within wide prediction intervals, but appeared different from the predictions. Combined analyses with structural-equation models confirmed that responses were asymmetrical and lower than predicted in both species. We show that genetic drift is likely to be a dominant source of uncertainty in typically-dimensioned selection experiments in plants and a major obstacle to predicting short-term evolutionary trajectories.
Authors
Barry Antonio Costa-Pierce Abagail Bockus Bela H. Buck Sander van den Burg Thierry Chopin João Gomes Ferreira Nils Goseberg Kevin Heasman Johan Johansen Sandra Shumway Neil A. Sims Albert G. J. TaconAbstract
recent publication by Belton et al. raises points for policy-makers and scientists to consider with respect to the future of aquaculture making recommendations on policies and investments in systems and areas of the world where aquaculture can contribute most. Belton et al. take an ‘us versus them’ approach separating aquaculture by economics, livelihood choices, and water salinity. They conclude “that marine finfish aquaculture in offshore environments will confront economic, biophysical, and technological limitations that hinder its growth and prevent it from contributing significantly to global food and nutrition security.” They argue that land-based freshwater aquaculture is a more favorable production strategy than ocean/marine aquaculture; they disagree with government and non-governmental organizations spatial planning efforts that add new aquaculture to existing ocean uses; they advocate for an open commons for wild fisheries as opposed to aquaculture; and they oppose ‘open ocean’ aquaculture and other types of industrial, capital-intensive, ‘carnivorous’ fish aquaculture. They discredit marine aquaculture rather than explain how all aquaculture sectors are significantly more efficient and sustainable for the future of food than nearly all land-based animal protein alternatives. As an interdisciplinary group of scientists who work in marine aquaculture, we disagree with both the biased analyses and the advocacy presented by Belton et al. Marine aquaculture is growing and is already making a significant contribution to economies and peoples worldwide. None of the concerns Belton et al. raise are new, but their stark statement that farming fish in the sea cannot ‘nourish the world’ misses the mark, and policy-makers would be wrong to follow their misinformed recommendations.
Authors
Jose Antonio Vazquez Carolina Hermida-Merino Daniel Hermida-Merino Manuel M. Piñeiro Johan Johansen Carmen G. Sotelo Ricardo I. Perez-Martin Jesus ValcarcelAbstract
Salmon processing commonly involves the skinning of fish, generating by-products that need to be handled. Such skin residues may represent valuable raw materials from a valorization perspective, mainly due to their collagen content. With this approach, we propose in the present work the extraction of gelatin from farmed salmon and further valorization of the remaining residue through hydrolysis. Use of different chemical treatments prior to thermal extraction of gelatin results in a consistent yield of around 5%, but considerable differences in rheological properties. As expected from a cold-water species, salmon gelatin produces rather weak gels, ranging from 0 to 98 g Bloom. Nevertheless, the best performing gelatins show considerable structural integrity, assessed by gel permeation chromatography with light scattering detection for the first time on salmon gelatin. Finally, proteolysis of skin residues with Alcalase for 4 h maximizes digestibility and antihypertensive activity of the resulting hydrolysates, accompanied by the sharpest reduction in molecular weight and higher content of essential amino acids. These results indicate the possibility of tuning salmon gelatin properties through changes in chemical treatment conditions, and completing the valorization cycle through production of bioactive and nutritious hydrolysates.
Abstract
Studies in natural populations are essential to understand the evolutionary ecology of senescence and terminal allocation. While there are an increasing number of studies investigating late-life variation in different life-history traits of wild populations, little is known about these patterns in social behaviour. We used long-term individual based data on yellow-bellied marmots (Marmota flaviventer) to quantify how affiliative social behaviours and different life-history traits vary with age and in the last year of life, and how patterns compare between the two. We found that some social behaviours and all life-history traits varied with age, whereas terminal last year of life effects were only observed in life-history traits. Our results imply that affiliative social behaviours do not act as a mechanism to adjust allocation among traits when close to death, and highlight the importance of adopting an integrative approach, studying late-life variation and senescence across multiple different traits, to allow the identification of potential trade-offs. This article is part of the theme issue ‘Ageing and sociality: why, when and how does sociality change ageing patterns?’
Authors
Svenja B. KroegerAbstract
No abstract has been registered
Authors
Leticia Regueiro Richard Newton Mohamed Soula Diego Méndez Björn Kok David C. Little Roberto Pastres Johan Johansen Martiña FerreiraAbstract
EU aquaculture produces only a small fraction of the internal demand of aquatic foods, but boosting this activity must be done in compliance with high standards of environmental protection and social benefits, as fostered by the policies on circular economy recently launched by the EU. Nevertheless, the assessment of the environmental sustainability of aquaculture and other food production systems is complex, due to the different tools and approaches available. Moreover, the current EU regulatory framework may be restricting the options to implement some circular solutions. This paper examines the controversies related to the assessment of environmental impacts of aquaculture processes and the different available circular solutions, with a focus on the best options to valorize aquaculture side streams and how current regulatory burdens and gaps should be solved.
Authors
Svenja B. KroegerAbstract
No abstract has been registered
Abstract
Leaf blotch diseases (LBD), such as Septoria nodorum bloch (Parastagnospora nodorum), Septoria tritici blotch (Zymoseptoria tritici) and Tan spot (Pyrenophora tritici-repentis) can cause severe yield losses (up to 50%) in Norwegian spring wheat (Triticum aestivum) and are mainly controlled by fungicide applications. A forecasting model to predict disease risk can be an important tool to optimize disease control. The association between specific weather variables and the development of LBD differs between wheat growth stages. In this study, a mathematical model to estimate phenological development of spring wheat was derived based on sowing date, air temperature and photoperiod. Weather factors associated with LBD severity were then identified for selected phenological growth stages by a correlation study of LBD severity data (17 years). Although information regarding host resistance and previous crop were added to the identified weather factors, two purely weather-based risk prediction models (CART, classification and regression tree algorithm) and one black box model (KNN, based on K nearest neighbor algorithm) were most accurate to predict moderate to high LBD severity (>5% infection). The predictive accuracy of these models (76–83%) was compared to that of two existing models used in Norway and Denmark (60 and 61% accuracy, respectively). The newly developed models performed better than the existing models, but still had the tendency to overestimate disease risk. Specificity of the new models varied between 49 and 74% compared to 40 and 37% for the existing models. These new models are promising decision tools to improve integrated LBD management of spring wheat in Norway.
Authors
Dmitry KechasovAbstract
No abstract has been registered