Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2019
Abstract
Many nonlinear methods of time series analysis require a minimal number of observations in the hundreds to thousands, which is not always easy to achieve for observations of environmental systems. Eddy Covariance (EC) measurements of the carbon exchange between the atmosphere and vegetation provide a noticeable exception. They are taken at high temporal resolution, typically at 20 Hz. This generates very long time series (many millions of data points) even for short measurement periods, rendering finite size effects unimportant. In this presentation, we investigate high-resolution raw data of 3D wind speed, CO2 concentrations, water vapor and temperature measured at a young forest plantation in Southeast Norway since July 2018. Guiding for the analysis is the gain or added value of the high resolution compared to more aggregated data, i.e. the scaling behavior of nonlinear properties of the time series. We present results of complexity analysis, Tarnopolski diagrams, q-Entropy, Hurst analysis, Empirical Mode Decomposition and Singular System Analysis. This provides detailed insights into the nature of dynamics of carbon fluxes across this system boundary at different temporal scales.
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Authors
Marit Almvik Marianne Stenrød Randi Bolli Alice Budai Ingvill Hauso Olaug Bach Steinar Haugse Ole Martin EkloAbstract
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Marit Almvik Marianne Stenrød Randi Bolli Alice Budai Ingvill Hauso Olaug Bach Steinar Haugse Ole Martin EkloAbstract
OBJECTIVES • Gain a better understanding of the fate of pesticides in the environment by also screening and detecting their metabolites • Predict and detect pesticide metabolites in soils using high resolution accurate mass (HRAM) tools; Thermo Q Exactive orbitrap and Compound DiscovererTM software. HIGHLIGHTS • We present in silico metabolism simulation to predict fungicide metabolites in soil • We present a screening method for 800 pesticides and metabolites in soil and food, exemplified with soil samples from strawberry field degradation studies (including fluopyram, boscalid and pyraclostrobin and others) • We address the lack of molecular formulas for known metabolites in current databases as an obstacle in establishing HRAM screening methods
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Hong Yang Lisa Paruch Xunji Chen Andre van Eerde Hanne Skomedal Yanliang Wang Di Liu Jihong Liu ClarkeAbstract
To meet increasing demand for animal protein, swine have been raised in large Chinese farms widely, using antibiotics as growth promoter. However, improper use of antibiotics has caused serious environmental and health risks, in particular Antimicrobial resistance (AMR). This paper reviews the consumption of antibiotics in swine production as well as AMR and the development of novel antibiotics or alternatives in China. The estimated application of antibiotics in animal production in China accounted for about 84240 tons in 2013. Overuse and abuse of antibiotics pose a great health risk to people through food-borne antibiotic residues and selection for antibiotic resistance. China unveiled a national plan to tackle antibiotic resistance in August 2016, but more support is needed for the development of new antibiotics or alternatives like plant extracts. Antibiotic resistance has been a major global challenge, so international collaboration between China and Europe is needed.
Authors
Andre van Eerde Aniko Varnai John-Kristian Jameson Lisa Paruch Anders Moen Jan Haug Anonsen Piotr Chylenski Hege Særvold Steen Inger Heldal Ralph Bock Vincent Eijsink Jihong Liu ClarkeAbstract
Sustainable production of biofuels from lignocellulose feedstocks depends on cheap enzymes for degradation of such biomass. Plants offer a safe and cost‐effective production platform for biopharmaceuticals, vaccines and industrial enzymes boosting biomass conversion to biofuels. Production of intact and functional protein is a prerequisite for large‐scale protein production, and extensive host‐specific post‐translational modifications (PTMs) often affect the catalytic properties and stability of recombinant enzymes. Here we investigated the impact of plant PTMs on enzyme performance and stability of the major cellobiohydrolase TrCel7A from Trichoderma reesei, an industrially relevant enzyme. TrCel7A was produced in Nicotiana benthamiana using a vacuum‐based transient expression technology, and this recombinant enzyme (TrCel7Arec) was compared with the native fungal enzyme (TrCel7Anat) in terms of PTMs and catalytic activity on commercial and industrial substrates. We show that the N‐terminal glutamate of TrCel7Arec was correctly processed by N. benthamiana to a pyroglutamate, critical for protein structure, while the linker region of TrCel7Arec was vulnerable to proteolytic digestion during protein production due to the absence of O‐mannosylation in the plant host as compared with the native protein. In general, the purified full‐length TrCel7Arec had 25% lower catalytic activity than TrCel7Anat and impaired substrate‐binding properties, which can be attributed to larger N‐glycans and lack of O‐glycans in TrCel7Arec. All in all, our study reveals that the glycosylation machinery of N. benthamiana needs tailoring to optimize the production of efficient cellulases.