Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2022
Authors
Ritter Atoundem Guimapi Saliou Niassy Bester Tawona Mudereri Elfatih M. Abdel-Rahman Ghislain T. Tepa-Yotto Sevgan Subramanian Samira A. Mohamed Karl Thunes Emily Kimathi Komi Mensah Agboka Manuele Tamò Jean Claude Rwaburindi Buyung Hadi Maged Elkahky May-Guri Sæthre Yeneneh Belayneh Sunday Ekesi Segenet Kelemu Henri E. Z. TonnangAbstract
After five years of its first report on the African continent, Fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith) is considered a major threat to maize, sorghum, and millet production in sub-Saharan Africa. Despite the rigorous work already conducted to reduce FAW prevalence, the dynamics and invasion mechanisms of FAW in Africa are still poorly understood. This study applied interdisciplinary tools, analytics, and algorithms on a FAW dataset with a spatial lens to provide insights and project the intensity of FAW infestation across Africa. The data collected between January 2018 and December 2020 in selected locations were matched with the monthly average data of the climatic and environmental variables. The multilevel analytics aimed to identify the key factors that influence the dynamics of spatial and temporal pest density and occurrence at a 2 km x 2 km grid resolution. The seasonal variations of the identified factors and dynamics were used to calibrate rule-based analytics employed to simulate the monthly densities and occurrence of the FAW for the years 2018, 2019, and 2020. Three FAW density level classes were inferred, i.e., low (0–10 FAW moth per trap), moderate (11–30 FAW moth per trap), and high (>30 FAW moth per trap). Results show that monthly density projections were sensitive to the type of FAW host vegetation and the seasonal variability of climatic factors. Moreover, the diversity in the climate patterns and cropping systems across the African sub-regions are considered the main drivers of FAW abundance and variation. An optimum overall accuracy of 53% was obtained across the three years and at a continental scale, however, a gradual increase in prediction accuracy was observed among the years, with 2020 predictions providing accuracies greater than 70%. Apart from the low amount of data in 2018 and 2019, the average level of accuracy obtained could also be explained by the non-inclusion of data related to certain key factors such as the influence of natural enemies (predators, parasitoids, and pathogens) into the analysis. Further detailed data on the occurrence and efficiency of FAW natural enemies in the region may help to complete the tri-trophic interactions between the host plants, pests, and beneficial organisms. Nevertheless, the tool developed in this study provides a framework for field monitoring of FAW in Africa that may be a basis for a future decision support system (DSS).
Authors
Johannes Breidenbach David Ellison Hans Petersson Kari T. Korhonen Helena M. Henttonen Jörgen Wallerman Jonas Fridman Terje Gobakken Rasmus Astrup Erik NæssetAbstract
Key message: Using satellite-based maps, Ceccherini et al. (Nature 583:72-77, 2020) report abruptly increasing harvested area estimates in several EU countries beginning in 2015. Using more than 120,000 National Forest Inventory observations to analyze the satellite-based map, we show that it is not harvested area but the map’s ability to detect harvested areas that abruptly increases after 2015 in Finland and Sweden. Keywords: Global Forest Watch, Landsat, Remote sensing, National Forest Inventory, Greenhouse Gas Inventory
Abstract
As a way to estimate evapotranspiration (ET), Heat Field Deformation (HFD) is a widely used method to measure sap flow of trees based on empirical relationships between heat transfer within tree stems and the sap flow rates. As an alternative, the Linear Heat Balance (LHB) method implements the same instrumental configuration as HFD but calculates the sap flow rates using analytical equations that are derived from fundamental conduction-convection heat transfer equations.
Authors
Declan J. Lafferty Richard V. Espley Cecilia H. Deng Catrin S. Günther Blue Plunkett Janice L. Turner Laura Jaakola Katja Karppinen Andrew C. Allan Nick W. AlbertAbstract
Members of the Vaccinium genus bear fruits rich in anthocyanins, a class of red-purple flavonoid pigments that provide human health benefits, although the localization and concentrations of anthocyanins differ between species: blueberry (V. corymbosum) has white flesh, while bilberry (V. myrtillus) has red flesh. Comparative transcriptomics between blueberry and bilberry revealed that MYBPA1.1 and MYBA1 strongly correlated with the presence of anthocyanins, but were absent or weakly expressed in blueberry flesh. MYBPA1.1 had a biphasic expression profile, correlating with both proanthocyanidin biosynthesis early during fruit development and anthocyanin biosynthesis during berry ripening. MYBPA1.1 was unable to induce anthocyanin or proanthocyanidin accumulation in Nicotiana benthamiana, but activated promoters of flavonoid biosynthesis genes. The MYBPA1.1 promoter is directly activated by MYBA1 and MYBPA2 proteins, which regulate anthocyanins and proanthocyanidins, respectively. Our findings suggest that the lack of VcMYBA1 expression in blueberry flesh results in an absence of VcMYBPA1.1 expression, which are both required for anthocyanin regulation. In contrast, VmMYBA1 is well expressed in bilberry flesh, up-regulating VmMYBPA1.1, allowing coordinated regulation of flavonoid biosynthesis genes and anthocyanin accumulation. The hierarchal model described here for Vaccinium may also occur in a wider group of plants as a means to co-regulate different branches of the flavonoid pathway.
Authors
Stephany Virrueta Herrera Kevin P. Johnson Andrew D. Sweet Eeva Ylinen Mervi Kunnasranta Tommi NymanAbstract
Host-specialist parasites of endangered large vertebrates are in many cases more endangered than their hosts. In particular, low host population densities and reduced among-host transmission rates are expected to lead to inbreeding within parasite infrapopulations living on single host individuals. Furthermore, spatial population structures of directly-transmitted parasites should be concordant with those of their hosts. Using population genomic approaches, we investigated inbreeding and population structure in a host-specialist seal louse (Echinophthirius horridus) infesting the Saimaa ringed seal (Phoca hispida saimensis), which is endemic to Lake Saimaa in Finland, and is one of the most endangered pinnipeds in the world. We conducted genome resequencing of pairs of lice collected from 18 individual Saimaa ringed seals throughout the Lake Saimaa complex. Our analyses showed high genetic similarity and inbreeding between lice inhabiting the same individual seal host, indicating low among-host transmission rates. Across the lake, genetic differentiation among individual lice was correlated with their geographic distance, and assignment analyses revealed a marked break in the genetic variation of the lice in the middle of the lake, indicating substantial population structure. These findings indicate that movements of Saimaa ringed seals across the main breeding areas of the fragmented Lake Saimaa complex may in fact be more restricted than suggested by previous population-genetic analyses of the seals themselves.
Abstract
Enhancing carbon storage in managed soils through increased use of cover and catch crops in cereal cropping is at the heart of a carbon-negative agriculture. However, increased C storage by additional biomass production has a nitrogen cost, both in form of increased N fertilizer use and by potentially increasing nitrous oxide (N2O) emissions when cover crops decay. Frost-sensitive, N-rich aboveground biomass may be a particular problem during wintertime, as it may fuel off season N2O emissions during freezing-thawing cycles, which have been shown to dominate the annual N2O budget of many temperate and boreal sites. Here we report growing season and winter N2O emissions in a plot experiment in SE Norway, testing a barley production system with seven different catch and cover crops (perennial and Italian ryegrass, oilseed radish, summer and winter vetch, phacelia and an herb mixture) against a control without cover crops. Cover crops where either undersown in spring or established after harvesting barley. While ryegrass undersown to barley marginally reduced N2O emissions during the growing season, freeze-thaw cycles in winter resulted in significantly larger N2O emissions in treatments with N-rich cover crops (oilseed reddish, vetch) and Italian ryegrass. N2O budgets will be presented relative to aboveground yield and quality of cover crops and compared to potential souil organic carbon gains.
Authors
Lisa M. Schüler Juline Walter Hidehiko Kato Hirono Suzuki Christopher Jonathan Hulatt Ralf Rautenberger Sofia Navalho Benjamin Schmid Joao Varela Kiron Viswanath Peter Simon Claus SchulzeAbstract
Phototrophic microalgae use light to produce biomass and high-value compounds, such as pigments and polyunsaturated fatty acids (PUFA), for food and feed. These biomolecules can be induced by flashing light during the final growth stage. We tested different exposure times (1–6 days) of flashing light (f = 0.5, 5, 50 Hz; duty cycle = 0.05) on biomass, pigment and fatty acid productivity in Diacronema lutheri and Tetraselmis striata. A three-day exposure to low-frequency (5 Hz) flashing light successfully increased the production of fucoxanthin, diatoxanthin, eicosapentaenoic (EPA) and docosahexaenoic (DHA) acids in D. lutheri up to 4.6-fold and of lutein, zeaxanthin and EPA in T. striata up to 1.3-fold compared to that of continuous light. Biomass productivity declined 2-fold for D. lutheri and remained similar for T. striata compared to that of continuous light. Thus, short-term treatments of flashing light may be promising for industrial algal production to increase biomass value.
Authors
Michelle Wainstein Louisa B. Harding Sandra M. O'Neill Daryle T. Boyd Fred Koontz Bobbi Miller Cornelya Klutsch Philippe J. Thomas Gina M. YlitaloAbstract
River otters (Lontra canadensis) are apex predators that bioaccumulate contaminants via their diet, potentially serving as biomonitors of watershed health. They reside throughout the Green-Duwamish River, WA (USA), a watershed encompassing an extreme urbanization gradient, including a US Superfund site slated for a 17-year remediation. The objectives of this study were to document baseline contaminant levels in river otters, assess otters’ utility as top trophic-level biomonitors of contaminant exposure, and evaluate the potential for health impacts on this species. We measured a suite of contaminants of concern, lipid content, nitrogen stable isotopes (δ15N), and microsatellite DNA markers in 69 otter scat samples collected from twelve sites. Landcover characteristics were used to group sampling sites into industrial (Superfund site), suburban, and rural development zones. Concentrations of polychlorinated biphenyls (PCBs), polybrominated diphenyl ether flame-retardants (PBDEs), dichlorodiphenyl-trichloroethane and its metabolites (DDTs), and polycyclic aromatic hydrocarbons (PAHs) increased significantly with increasing urbanization, and were best predicted by models that included development zone, suggesting that river otters are effective biomonitors, as defined in this study. Diet also played an important role, with lipid content, δ15N or both included in all best models. We recommend river otter scat be included in evaluating restoration efforts in this Superfund site, and as a potentially useful monitoring tool wherever otters are found. We also report ΣPCB and ΣPAH exposures among the highest published for wild river otters, with almost 70% of samples in the Superfund site exceeding established levels of concern.
Authors
Maja Turnšek Siv Skar Marit Piirman Ragnheiður I. Thorarinsdottir Martina Bavec Ranka JungeAbstract
At times of crisis, home gardening has often been sought out as a potential solution for threats to food security and as a measure to increase socio-psychological effects, such as public sense of self-efficacy, trust in the government and care for one’s wellbeing. The objective of this study was to investigate if home gardening increased during the COVID-19 pandemic in the spring/summer of 2020 and to provide socio-psychological insights into the explanatory factors of such an increase. An explanatory theoretical model of home gardening was proposed and tested to analyse whether home gardening is correlated to food security concerns, and if so, to what extent. A non-representative survey was conducted in five European countries (Slovenia, Norway, Estonia, Switzerland, and Iceland) using snowball sampling via social media networks, reaching 1144 participants. The results showed the pandemic did prove to be an important psychological push towards home gardening prompted by food security concerns. Measured as loose as introducing at least one new gardening activity during COVID-19, this study found an approximately 10% increase in home gardening during the first wave of COVID-19 in the sample population, which was skewed towards educated, female, middle-class Europeans.
Authors
Niels Piot Oliver Schweiger Ivan Meeus Orlando Yañez Lars Straub Laura Villamar-Bouza Pilar De la Rúa Laura Jara Carlos Ruiz Martin Malmstrøm Sandra Mustafa Anders Nielsen Marika Mänd Reet Karise Ivana Tlak-Gajger Erkay Özgör Nevin Keskin Virginie Diévart Anne Dalmon Anna Gajda Peter Neumann Guy Smagghe Peter Graystock Rita Radzevičiūtė Robert J. Paxton Joachim R. de MirandaAbstract
Viruses are omnipresent, yet the knowledge on drivers of viral prevalence in wild host populations is often limited. Biotic factors, such as sympatric managed host species, as well as abiotic factors, such as climatic variables, are likely to impact viral prevalence. Managed and wild bees, which harbor several multi-host viruses with a mostly fecal–oral between-species transmission route, provide an excellent system with which to test for the impact of biotic and abiotic factors on viral prevalence in wild host populations. Here we show on a continental scale that the prevalence of three broad host viruses: the AKI-complex (Acute bee paralysis virus, Kashmir bee virus and Israeli acute paralysis virus), Deformed wing virus, and Slow bee paralysis virus in wild bee populations (bumble bees and solitary bees) is positively related to viral prevalence of sympatric honey bees as well as being impacted by climatic variables. The former highlights the need for good beekeeping practices, including Varroa destructor management to reduce honey bee viral infection and hive placement. Furthermore, we found that viral prevalence in wild bees is at its lowest at the extreme ends of both temperature and precipitation ranges. Under predicted climate change, the frequency of extremes in precipitation and temperature will continue to increase and may hence impact viral prevalence in wild bee communities.