Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2022
Abstract
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Abstract
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Abstract
The occurrence of freeze–thaw cycles modifies water infiltration processes and surface runoff generation. Related processes are complex and are not yet fully investigated at field scale. While local weather conditions and soil management practices are the most important factors in both runoff generation and surface erosion processes, local terrain heterogeneities may significantly influence soil erosion processes in catchments with undulating terrain. This paper presents a field-based investigation of spatial and temporal heterogeneities in subsurface soil moisture and soil temperature associated with freezing, thawing, and snowmelt infiltration. The field setup consists of a combination of traditional point measurements performed with frequency domain reflectometry (FDR) and electrical resistivity tomography (ERT). The transect was approximately 70 m long and spanned an entire depression with a north-facing slope (average slope of 11.5%) and a south-facing slope (average slope of 9.7%). The whole depression was entirely covered with stubble. Observed resistivity patterns correspond well to the measured soil moisture patterns. During the observation period, the north facing slope froze earlier and deeper compared with the south facing slope. Freeze–thaw cycles were less pronounced in the north-facing slope than in the south-facing slope. There were also differences in soil temperature and soil moisture patterns between lower and upper parts of the monitored depression. These indicate that initiation and development of runoff related processes, and consequently soil erosion, in regions with freeze–thaw cycles may differ significantly depending on local terrain characteristics. Consequently, it indicates that spatial terrain heterogeneities, especially slope aspects, may be important when studying soil erosion processes, water flow and nutrient leaching in lowlands where patchy snowpacks and dynamic freeze–thaw cycles are predominating.
Abstract
Rapid methods allowing for non-destructive crop monitoring are imperative for accurate in-season nitrogen (N) status assessment and precision N management. The objectives of this paper were to (1) compare the performance of a leaf fluorescence sensor Dualex 4 and an active canopy reflectance sensor Crop Circle ACS-430 for estimating maize (Zea mays L.) N status indicators across growth stages; (2) evaluate the potential of N status prediction across growth stages using the reflectance parameters acquired from the canopy sensor at an early growth stage; and, (3) investigate the prospect of combining the active canopy sensor and leaf fluorescence sensor data to estimate N nutrition index (NNI) indirectly using a general model across growth stages. The results indicated that data from both sensors were closely related to NNI across stages. However, using the direct NNI estimation method, among the tested indices, only the N balance index (NBI) could diagnose N status satisfactorily, based on the Kappa statistics. The effect of growth stages on proximal sensing was reduced by incorporating the information of days after sowing. It was found that the leaf fluorescence sensor performed relatively better in estimating plant N concentration whereas the canopy reflectance sensor performed better in aboveground biomass estimation. Their combination significantly improved the reliability of N diagnosis, including NNI prediction. In addition, the study confirmed that N status can be assessed by predicting aboveground biomass at the later stages using the canopy reflectance measurements at an early stage. Furthermore, the integrated NBI was verified to be a more robust and sensitive N status indicator than the chlorophyll concentration index. It is concluded that combining active canopy sensor data, of an early growth stage (e.g. V8), with leaf fluorescence sensor data, modified using days after sowing, can improve the accuracy of corn N status diagnosis across growth stages.
Abstract
No abstract has been registered
Abstract
The impact of weather, soil and management on yield and nutritive value of grassland can be evaluated using process-based simulation models. These models may be calibrated using data on biomass, leaf area and other characteristics acquired from drones, hand-held devices, and satellites. The objective of this study was to compare the prediction accuracy of the BASGRA model calibrated with grassland data from Northern Norway obtained in 2016 and 2017. The data were acquired either from: (1) ground registrations; or (2) a hand-held spectrometer and satellites. Data on crude protein and fibre content from NIRS analyses were used in both calibrations. Daily air temperature, precipitation, relative air humidity, wind speed and solar radiation that were input to the BASGRA simulations were taken from The Norwegian Meteorological Institute and The Agrometeorology Norway network. Information about soil texture, cutting regime and N fertilization was obtained from farmers and advisers. The differences between simulated and observed biomass, and crude protein and fibre content were similar after the two calibrations. Observed crude protein and fibre content were simulated with a higher accuracy than biomass for both types of calibration data.
Authors
Francesca Shepherd Caroline Chylinski Michael R. Hutchings Joana Lima Ross Davidson Robert Kelly Alastair Macrae Juha-Pekka Salminen Marica T. Engström Veronica Maurer Håvard Steinshamn Susanne Fittje Ángela Morell Pérez Rocio Rosa Garcia Spiridoula AthanasiadouAbstract
Background: Gastrointestinal nematode (GIN) control is traditionally achieved with the use of anthelmintic drugs, however due to regulations in organic farming and the rise in anthelmintic resistance, alternatives are sought after. A promising alternative is the use of bioactive plant feeding due to the presence of plant secondary metabolites (PSMs) such as proanthocyanidins (PAs). This study focussed on the perennial shrub heather (Ericaceae family), a plant rich in PAs, highly abundant across Europe and with previously demonstrated anthelmintic potential. Methods: In vitro assays were used to investigate heather’s anthelmintic efficacy against egg hatching and larval motility. Heather samples were collected from five European countries across two seasons, and extracts were tested against two GIN species: Teladorsagia circumcincta and Trichostrongylus colubriformis. Polyphenol group‑specific ultraperformance liquid chromatography‑tandem mass spectrometry analysis was performed to identify relevant polyphenol subgroups present, including the PA concentration and size and ratio of the subunits. Partial least squares analysis was performed to associate efficacy with variation in PSM composition. Results: Heather extracts reduced egg hatching of both GIN species in a dose‑dependent manner by up to 100%, while three extracts at the highest concentration (10 mg/ml) reduced larval motility to levels that were not signifi‑ cantly different from dead larvae controls. PAs, particularly the procyanidin type, and flavonol derivatives were associ‑ ated with anthelmintic activity, and the particular subgroup of polyphenols associated with the efficacy was depend‑ ent on the GIN species and life stage. Conclusions: Our results provide in vitro evidence that heather, a widely available plant often managed as a weed in grazing systems, has anthelmintic properties attributed to various groups of PSMs and could contribute to sustainable GIN control in ruminant production systems across Europe.
Authors
Jayanga T. Samarasinghe Vindhya Basnayaka Miyuru Gunathilake Hazi M. Azamathulla Upaka RathnayakeAbstract
The application of numerical models to understand the behavioural pattern of a flood is widely found in the literature. However, the selection of an appropriate hydraulic model is highly essential to conduct reliable predictions. Predicting flood discharges and inundation extents are the two most important outcomes of flood simulations to stakeholders. Precise topographical data and channel geometries along a suitable hydraulic model are required to accurately predict floods. One-dimensional (1D) hydraulic models are now replaced by two-dimensional (2D) or combined 1D/2D models for higher performances. The Hydraulic Engineering Centre’s River Analysis System (HEC-RAS) has been widely used in all three forms for predicting flood characteristics. However, comparison studies among the 1D, 2D to 1D/2D models are limited in the literature to identify the better/best approach. Therefore, this research was carried out to identify the better approach using an example case study of the Kelani River basin in Sri Lanka. Two flood events (in 2016 and 2018) were separately simulated and tested for their accuracy using observed inundations and satellite-based inundations. It was found that the combined 1D/2D HEC-RAS hydraulic model outperforms other models for the prediction of flows and inundation for both flood events. Therefore, the combined model can be concluded as the better hydraulic model to predict flood characteristics of the Kelani River basin in Sri Lanka. With more flood studies, the conclusions can be more generalized.
Abstract
Heat Field Deformation (HFD) is a widely used method to measure sap flow of trees based on empirical relationships between heat transfer within tree stems and the sap flow rates. As an alternative, the Linear Heat Balance (LHB) method implements the same instrumental configuration as HFD but calculates the sap flow rates using analytical equations that are derived from fundamental conduction-convection heat transfer theories. In this study, we systematically compared the sap flow calculated using the two methods based on data that were recorded using the same instrument. The measurements were conducted on four Norway spruce trees. We aimed to evaluate the discrepancies between the sap flow estimates from the two methods and determine the underlying causes. Diurnal and day-to-day patterns were consistent between the sap flow estimates from the two methods. However, the magnitudes of the estimated sap flow were different between them, where LHB resulted in much lower estimates in three trees and slightly higher estimates in one compared to HFD. We also observed larger discrepancies in negative (reversed flow) than in positive sap flow, where the LHB resulted in lower reversed flow than HFD. Consequently, the seasonal budget estimated by LHB can be as low as ∼20% of that estimated by HFD. The discrepancies can be mainly attributed to the low wood thermal conductivities for the studied trees that lead to substantial underestimations using the LHB method. In addition, the sap flow estimates were very sensitive to the value changes of the empirical parameters in the calculations and, thus, using a proper case-specific value is recommended, especially for the LHB method. Overall, we suggest that, despite the strong theoretical support, the correctness of LHB outputs depends largely on the tree individuals and should be carefully evaluated.
Authors
Aritz Royo-Esnal Andrea Onofri Alireza Taab Donato Loddo Jevgenija Necajeva Ahmet Uludag Agnieszka Synowiec Isabel M. Calha Lars Andersson Peter K. Jensen Ilhan Uremis Garifalia Economou Alistair J. Murdoch Kirsten TørresenAbstract
The variability in the emergence process of different populations was confirmed for two Echinochloa crus-galli populations, one from Italy (IT) and the second from Norway (NO). Seeds were sown in 12 localities over Europe and the Middle East, and the emergence patterns of IT and NO were compared with those of several local populations at each location. Seeds of each population were sown in pots buried to the ground level. The base temperature (Tb) for emergence was estimated by (1) analysing logistic models applied to the field emergence of IT and NO, and (2) a germination assay set in winter 2020 at constant temperatures (8, 11, 14, 17, 20, 26, 29°C) with newly collected seeds in 2019 from the same fields where IT and NO had previously been harvested in 2015. The logistic models developed for IT and NO in each location showed that the emergence pattern of IT was similar to that of the local populations in Poland, Italy, Spain, Turkey South and Iran, while NO fitted better to those in Sweden and Latvia. No germination was obtained for IT in a germination chamber, but the estimated Tb with the logistic model was 11.2°C. For NO, the estimated Tb was 8.8°C in the germination chamber and 8.1°C in the field. Results suggest that adaptation to local environmental conditions has led to inter-population differences in Tb and parameter estimates of thermal-time models to predict the emergence of E. crus-galli should only be used for populations with similar climatic and habitat conditions.