Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2024
Abstract
Increasing levels of global environmental change may have negative impacts on fertility and embryo viability in animals that could explain a recently reported increase in hatching failure in bird eggs across the globe. Here we test this relationship again by analyzing a dataset containing almost twice as many species and covering a longer time period than earlier works (n = 431 species during the period 1906–2022). We also tested for effects of Red List status and global population size. We found that hatching failure rates in a combined group of bird species currently classified as threatened (IUCN Red List categories Critically Endangered, Endangered and Vulnerable) or Near Threatened, peaked in the late 1970s to early 1980s and thereafter declined. A similar trend also existed in species with relatively small global populations. In contrast, no temporal trends were found in species in the Least Concern category, or in species with large global populations. Moreover, hatching failure rates declined significantly with increasing global population sizes. The temporal peak of hatching failure rates in threatened and Near Threatened species corresponds with the peak in environmental levels of the insecticide DDT. While this could suggest that environmental pollution caused the temporal trends in hatching failure rates, effects of inbreeding in small and threatened populations sampled more frequently during this period could not be excluded. Although we found no evidence suggesting that the rates of hatching failure in bird eggs are increasing, the current study supports previous works showing that species of high conservation concern appear to be more susceptible to factors leading to reproductive failure than other species.
Abstract
No abstract has been registered
Authors
Tor MykingAbstract
No abstract has been registered
Authors
Nga Nguyen Ulrich Bergmann Laura Elina Jaakola Hely Häggman Soile Jokipii-Lukkari Katalin TothAbstract
Bilberry (Vaccinium myrtillus L.) is a wild berry species that is prevalent in northern Europe. It is renowned and well-documented for its nutritional and bioactive properties, especially due to its anthocyanin content. However, an overview of biological systems governing changes in other crucial quality traits, such as size, firmness, and flavours, has received less attention. In the present study, we investigated detailed metabolomic and proteomic profiles at four different ripening stages of bilberry to provide a comprehensive understanding of overall quality during fruit ripening. By integrating omics datasets, we revealed a novel global regulatory network of plant hormones and physiological processes occurring during bilberry ripening. Key physiological processes, such as energy and primary metabolism, strongly correlate with elevated levels of gibberellic acids, jasmonic acid, and salicylic acid in unripe fruits. In contrast, as the fruit ripened, processes including flavour formation, cell wall modification, seed storage, and secondary metabolism became more prominent, and these were associated with increased abscisic acid levels. An indication of the increase in ethylene biosynthesis was detected during bilberry development, raising questions about the classification of non-climacteric and climacteric fruits. Our findings extend the current knowledge on the physiological and biochemical processes occurring during fruit ripening, which can serve as a baseline for studies on both wild and commercially grown berry species. Furthermore, our data may facilitate the optimization of storage conditions and breeding programs, as well as the future exploration of beneficial compounds in berries for new applications in food, cosmetics, and medicines.
Authors
Anna Avetisyan Ivan Gabrielyan Tigran Ghrejyan Mark Kalashian Marine Movsesyan Mane Tadevosyan Amalya Iskandaryan Anne Muola Laura Elina Jaakola Inger MartinussenAbstract
No abstract has been registered
Abstract
The No-till system and organic fertilization combined can be a potential strategy to avoid nutrient leaching, as the soil structure plays a crucial role in retaining them. In this study, we evaluated the influence of different rates of a bio-fertilizer made of industrial organic waste (IOW) from a poultry slaughterhouse on the percolation and stocks of nitrate in disturbed and undisturbed soil samples collected from a subtropical no-till field in southern Brazil. In an incubation experiment, we performed a percolation experiment using lysimeters and simulated rainfall for 180 days and evaluated the remaining soil nitrate stock after the incubation period. We set up a completely randomized experiment with three replicates using four IOW rates (equivalent to 0, 2, 4, and 8 Mg ha−1) and two sample types: disturbed and undisturbed soils. Using the bio-fertilizer increased nitrate mineralization from 0.77 to 1.55 kg ha−1 day−1. Overall, the IOW application increased the amount of percolated nitrate, significantly influenced by the simulated rainfall (p < 0.01). The amount of water flushed through the lysimeters was significantly higher for the disturbed soils (p < 0.05, LSD test), suggesting that the loosened structure promoted a higher water flux. No differences were observed between undisturbed and disturbed samples for nitrate percolation, implying that the amount of nitrate in the liquid soil phase may be a more critical factor in determining nitrate leaching than the water flux. The disturbed samples presented significantly higher nitrate percolation with increasing IOW rates, regardless of precipitation. Stocks in the 0–5 cm depth were 6.6 kg ha−1 higher for undisturbed samples (p < 0.05, LSD test). This result suggests preserving the soil structure can significantly increase the nitrate stocks upon IOW application.
Abstract
Biomethanation represents a promising approach for biomethane production, with biofilm-based processes like trickle bed reactors (TBRs) being among the most efficient solutions. However, maintaining stable performance can be challenging, and both pure and mixed culture approaches have been applied to address this. In this study, inocula enriched with hydrogenotrophic methanogens were introduced to to TBRs as bioaugmentation strategy to assess their impacts on the process performance and microbial community dynamics. Metagenomic analysis revealed a metagenome-assembled genome belonging to the hydrogenotrophic genus Methanobacterium, which became dominant during enrichment and successfully colonized the TBR biofilm after bioaugmentation. The TBRs achieved a biogas production with > 96 % methane. The bioaugmented reactor consumed additional H2. This may be due to microbial species utilizing CO2 and H2 via various CO2 reduction pathways. Overall, implementing bioaugmentation in TBRs showed potential for establishing targeted species, although challenges remain in managing H2 consumption and optimizing microbial interactions.
Authors
Valentina Sierra-Jimenez Jonathan P. Mathews Pilsun Yoo Alice Budai Farid Chejne Anthony Dufour Manuel Garcia-PerezAbstract
A well-defined methodology for constructing appropriate atomistic representations of biochar will aid in visualizing the structural features and elucidating biochar behavior with molecular dynamics (MD) simulations. Such knowledge will facilitate engineering biochars tailored to specific applications. To achieve this goal, we adapted modeling strategies applied in coal science by employing multi-cross-polarization 13C nuclear magnetic resonance, ultimate analysis, Fourier-transform infrared spectroscopy, and X-ray photoelectron spectroscopy to identify functional groups. Helium density, surface area, and porosity were used to assess structural features. Biochar's aromatic cluster size distribution was proposed based on data from the benzene polycarboxylic acid method. The computational framework reduces bias by incorporating chemical information derived from density functional theory, reactive MD simulations, and advanced characterization data. The construction approach was successfully applied to cellulose biochars produced at four temperatures, obtaining independent representations with a relative error on the atomic contents of <10 % for oxygen and nitrogen and <5 % for carbon and hydrogen. The atomistic representations were validated using X-ray diffraction, electron spin resonance data, and laser desorption/ionization Fourier-transform ion cyclotron resonance-mass spectrometry. The code will assist others in overcoming structural creation barriers and enable the utilization of the generated structures for further simulations.
Authors
Vibeke Lind Özge Sizmaz Ahu Demirtas Mert Sudagidan Simon Weldon Alice Budai Adam O'Toole Dejan Dragan Miladinovic Grete H. M. JørgensenAbstract
Biochar, which is the product of biomass pyrolysis, has been suggested as a feed supplement to improve performance in livestock systems and reduce greenhouse gas emissions. The aim of the current study was to investigate in vitro and in vivo potential of biochar to favourably modify rumen fermentation (e.g., an increase in total Short Chained Fatty Acid (SCFA) concentration and a change in SCFA profile), reduce methane emission and increase sheep growth performance. Four concentrates were produced with biochar inclusion of 0, 10, 23 and 46 g/kg DM. The experimental diets for the in vitro experiments consisted of straw and concentrate in a 60:40 ratio and included measurements of total gas and methane (CH4) production, pH, ammonia nitrogen, SCFA, and microbial assays (total bacteria and methanogenic archaea). Two in vivo experiments were performed where the animals received ad libitum forage with 0.4 kg concentrate daily. Experiment 1 investigated the daily DM intake of sheep while experiment 2 investigated daily growth rate and CH4 emission of lambs. The inclusion of biochar had no impact on in vitro total gas production (ml/200 mg DM substrate) (P = 0.81) and CH4 production (ml/200 mg DM substrate) (P = 0.93). In vitro total SCFA concentration increased (P < 0.05) while acetate to propionate ratio (A:P) tended to decrease (P = 0.05) with both doses of biochar. Total bacteria decreased with the highest biochar inclusion in vitro (P < 0.05). Sheep’s DM intake (kg/d) increased when low and medium levels but not when a higher level of biochar was added to the diet (P < 0.001). The inclusion of biochar did not significantly impact the lamb’s daily growth rate (g/d) (P = 0.61) or enteric CH4 emissions (g/kg DM) (P = 0.43). We conclude that biochar supplementation had no favourable impacts on in vitro and in vivo CH4 production or on lamb’s growth rate. Further research with well-characterised biochar is needed to gain a better understanding of the potential of biochar as a feed additive for ruminant livestock.
Lecture – Biochar for climate and sustainable agriculture : perspectives and challenges
Daniel Rasse
Authors
Daniel RasseAbstract
No abstract has been registered