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Publications

NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.

2017

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Abstract

Microbiological degradation of wood by decay fungi can cause a rapid change in the structural properties of timber which can result in both strength and mass loss. Traditional techniques for the evaluation of decay (e.g. mass loss) lack the sensitivity to evaluate the effects of the very first stages of the decay process. This paper describes the effects of initial brown rot decay, defined by the amount of Poria placenta genomic DNA (gDNA) present in the samples, on the dynamic mechanical properties of the timber. It was found that there is a correlation between the mean storage modulus of the timber and the amount of P. placenta gDNA present, and therefore the level of decay. This shows that using dynamic mechanical analysis is a viable technique that can be used to study initial decay processes.

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Abstract

The European winter moth, Operophtera brumata, is a non-native pest in the Northeastern USA causing defoliation of forest trees and crops such as apples and blueberries. This species is known to hybridize with O. bruceata, the Bruce spanworm, a native species across North America, although it is not known if there are hybrid generations beyond F1. To study winter moth population genetics and hybridization with Bruce spanworm, we developed two sets of genetic markers, single nucleotide polymorphisms (SNPs) and microsatellites, using genomic approaches. Both types of markers were validated using samples from the two species and their hybrids. We identified 1216 SNPs and 24 variable microsatellite loci. From them we developed a subset of 95 species-diagnostic SNPs and ten microsatellite loci that could be used for hybrid identification. We further validated the ten microsatellite loci by screening field collected samples of both species and putative hybrids. In addition to confirming the presence of F1 hybrids reported in previous studies, we found evidence for multi-generation asymmetric hybridization, as suggested by the occurrence of hybrid backcrosses with the winter month, but not with the Bruce spanworm. Laboratory crosses between winter moth females and Bruce spanworm males resulted in a higher proportion of viable eggs than the reciprocal cross, supporting this pattern. We discuss the possible roles of population demographics, sex chromosome genetic incompatibility, and bacterial symbionts as causes of this asymmetrical hybridization and the utility of the developed markers for future studies.

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Abstract

Cable yarding is a semi-mechanized timber harvesting system that relies on human machine interaction where a considerable share of the work is done by forest workers. The system is used in mountain forests around the world. Automation of one or more functions could contribute to increased productivity, reduced physical workloads and improved safety conditions. This paper presents a method for sensor data fusion in order to automatically distinguish work phases using Partial Least Squares Discriminant Analysis (PLS-DA). The Robot Operation System (ROS) is implemented to allow for real-time data processing with a maximum latency of 0.16 s. Global Positioning System (GPS), Inertial Measurement Unit (IMU) and camera integration provided a robust solution for 78% correct process segmentation. These results provide a basis for further development from which there is a possibility of expanding this approach for semi-automation, remote control, and autonomous operation.

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Abstract

The plant hormone auxin is a vital component for plant reproduction as it regulates the development of both male and female reproductive organs, including ovules and gynoecia. Furthermore, auxin plays important roles in the development and growth of seeds and fruits. Auxin responses can be detected in ovules shortly after fertilization, and it has been suggested that this accumulation is a prerequisite for the developmental reprogramming of the ovules to seeds, and of the gynoecium to a fruit. However, the roles of auxin at the final stages of ovule development, and the sources of auxin leading to the observed responses in ovules after fertilization have remained elusive. Here we have characterized the auxin readout in Arabidopsis ovules, at the pre-anthesis, anthesis and in the immediate post-fertilization stages, using the R2D2 auxin sensor. In addition we have mapped the expression of auxin biosynthesis and conjugation genes, as well as that of auxin transporting proteins, during the same developmental stages. These analyses reveal specific spatiotemporal patterns of the different auxin homeostasis regulators. Auxin biosynthesis genes and auxin transport proteins define a prepatterning of vascular cell identity in the pre-anthesis funiculus. Furthermore, our data suggests that auxin efflux from the ovule is restricted in an anther-dependent manner, presumably to synchronize reproductive organ development and thereby optimizing the chances of successful fertilization. Finally, de novo auxin biosynthesis together with reduced auxin conjugation and transport result in an enhanced auxin readout throughout the sporophytic tissues of the ovules soon after fertilization. Together, our results suggest a sophisticated set of regulatory cascades that allow successful fertilization and the subsequent transition of the female reproductive structures into seeds and fruits.

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Abstract

OBJECT: Improved precision fertilization by introducing sensors and remote control to secure fruit yield and reduce nutrient leaching in soil culture. MATERIAL AND METHODS:We broadcasted before bedding and mulching 50 g m–2 of a multi-mineral fertilizer. Beds had two plant rows 20 cm apart, with plant distance of 25 cm. Experimental design was split plot with three replications and three treatments. Treatments: fertigation in large plots, cultivar in small plots and year. RESULTS: Plant development in the establishing year had no benefit of fertigation in addition to fertilizer given before bedding. When the yield is 3 kg m–2 a nutrient solution of 6 g N m–2 gave highest yield, using 4 g m–2 from two weeks before harvest and during harvest. ‘Florence’ and ‘Sonata’ developed well; however, ‘Florence’ had mildew on fruits in the last cropping year. ‘Korona’ presented well the first cropping year, but grew small fruits heavily infested by mildew in the last cropping year. CONCLUSION: Fertilization had effect on fruit yield. It is discussed how a fertilization schedule for the establishment year and cropping years can be adapted to plant development stages. Mildew infestation on fruits was dependent of cultivar and fertilization. Introducing sensors for recording of growth factors and in situ ion-levels of soil water nutrients, proved valuable.

Abstract

Large-scale bark beetle outbreaks in northern conifer forests have already demonstrated huge impacts on forest economy, ecosystems and carbon dynamics. In North America, a historically unprecedented outbreak of the mountain pine beetle has expanded north- and eastwards beyond its historical range, and has reached epidemic levels in areas of northern British Columbia previously thought to be unsuitable for beetle survival. In Europe, the vast northern spruce forests have been spared from bark beetle outbreaks in the past, but here we review some recent observations and research results indicating that this may be undergoing change. For example, monitoring data of the most serious tree-killing bark beetle in Europe, Ips typographus, show a several-fold increase of the populations in its northern range during warm years. In the extensive spruce forests of northern Fennoscandia and Russia, a new phenomenon of tree-killing episodes by I. typographus has occurred in the last decade. Northern localities with one beetle generation per year in the past are now having more often two. Also other bark beetle species in the genus Ips have demonstrated a fast northward expansion in Europe, including one species contributing in bark beetle outbreaks of I. typographus in Central and Southern Europe.