Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2020
Forfattere
Ranjana Pathak Åshild Ergon Arne Stensvand Hans Ragnar Gislerød Knut Asbjørn Solhaug Lance Cadle-Davidson Aruppillai SuthaparanSammendrag
No abstract has been registered
Forfattere
David M. Geiser Abdullah M. S. Al-Hatmi Takayuki Aoki Tsutomu Arie Virgilio Balmas Irene Barnes Gary C. Bergstrom Madan K. Bhattacharyya Cheryl L. Blomquist Robert L. Bowden Balázs Brankovics Daren W. Brown Lester W. Burgess Kathryn Bushley Mark Busman José F. Cano-Lira Joseph D. Carrillo Hao-Xun Chang Chi-Yu Chen Wanquan Chen Martin Chilvers Sofia Chulze Jeffrey J. Coleman Christina A. Cuomo Z. Wilhelm De Beer G. Sybren de Hoog Johanna Del Castillo-Múnera Emerson M. Del Ponte Javier Diéguez-Uribeondo Antonio Di Pietro Véronique Edel-Hermann Wade H. Elmer Lynn Epstein Akif Eskalen Maria Carmela Esposto Kathryne L. Everts Sylvia P. Fernández-Pavía Gilvan Ferreira da Silva Nora A. Foroud Gerda Fourie Rasmus J. N. Frandsen Stanley Freeman Michael Freitag Omer Frenkel Kevin K. Fuller Tatiana Gagkaeva Donald M. Gardiner Anthony E. Glenn Scott E. Gold Thomas R. Gordon Nancy F. Gregory Marieka Gryzenhout Josep Guarro Beth K. Gugino Santiago Gutierrez Kim E. Hammond-Kosack Linda J. Harris Mónika Homa Cheng-Fang Hong László Hornok Jenn-Wen Huang Macit Ilkit Adriaana Jacobs Karin Jacobs Cong Jiang María del Mar Jiménez-Gasco Seogchan Kang Matthew T. Kasson Kemal Kazan John C. Kennell Hye-Seon Kim H. Corby Kistler Gretchen A. Kuldau Tomasz Kulik Oliver Kurzai Imane Laraba Matthew H. Laurence Theresa Lee Yin-won Lee Yong-Hwan Lee John F. Leslie Edward C.Y. Liew Lily W. Lofton Antonio F. Logrieco Manuel S. López-Berges Alicia G. Luque Erik Lysøe Li-Jun Ma Robert E. Marra Frank N. Martin Sara R. May Susan P. McCormick Chyanna McGee Jacques F. Meis Quirico Migheli N. M. I. Mohamed Nor Michel Monod Antonio Moretti Diane Mostert Giuseppina Mulè Françoise Munaut Gary P. Munkvold Paul Nicholson Marcio Nucci Kerry O’Donnell Matias Pasquali Ludwig H. Pfenning Anna Prigitano Robert H. Proctor Stéphane Ranque Stephen A. Rehner Martijn Rep Gerardo Rodríguez-Alvarado Lindy Joy Rose Mitchell G. Roth Carmen Ruiz-Roldan Amgad A. Saleh Baharuddin Salleh Hyunkyu Sang María Mercedes Scandiani Jonathan Scauflaire David G. Schmale III Dylan P. G. Short Adnan Šišić Jason A. Smith Christopher W. Smyth Hokyoung Son Ellie Spahr Jason E. Stajich Emma T. Steenkamp Christian Steinberg Rajagopal Subramaniam Haruhisa Suga Brett A. Summerell Antonella Susca Cassandra L. Swett Christopher Toomajian Terry J. Torres-Cruz Anna M. Tortorano Martin Urban Lisa J. Vaillancourt Gary E. Vallad Theo A. J. van der Lee Dan Vanderpool Anne D. van Diepeningen Martha M. Vaughan Eduard Venter Marcele Vermeulen Paul E. Verweij Altus Viljoen Cees Waalwijk Emma C. Wallace Grit Walther Jie Wang Todd J. Ward Brian L. Wickes Nathan P. Wiederhold Michael J. Wingfield Ana K. M. Wood Jin-Rong Xu Xiao-Bing Yang Tapani Yli-Mattila Sung-Hwan Yun Latiffah Zakaria Hao Zhang Ning Zhang Sean X. Zhang Xue ZhangSammendrag
Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. Previously (Geiser et al. 2013; Phytopathology 103:400-408. 2013), the Fusarium community voiced near unanimous support for a concept of Fusarium that represented a clade comprising all agriculturally and clinically important Fusarium species, including the F. solani Species Complex (FSSC). Subsequently, this concept was challenged by one research group (Lombard et al. 2015 Studies in Mycology 80: 189-245) who proposed dividing Fusarium into seven genera, including the FSSC as the genus Neocosmospora, with subsequent justification based on claims that the Geiser et al. (2013) concept of Fusarium is polyphyletic (Sandoval-Denis et al. 2018; Persoonia 41:109-129). Here we test this claim, and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of Fusarium including the FSSC. We reassert the practical and scientific argument in support of a Fusarium that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species recently described as Neocosmospora were recombined in Fusarium, and nine others were renamed Fusarium. Here the global Fusarium community voices strong support for the inclusion of the FSSC in Fusarium, as it remains the best scientific, nomenclatural and practical taxonomic option available.
Forfattere
Arne StensvandSammendrag
No abstract has been registered
Forfattere
Sharad Mohan K. Kiran Kumar Vivek Sutar Supradip Saha Janet Rowe Keith DaviesSammendrag
Phytonematodes are globally important functional components of the belowground ecology in both natural and agricultural soils; they are a diverse group of which some species are economically important pests, and environmentally benign control strategies are being sought to control them. Using eco-evolutionary theory, we test the hypothesis that root-exudates of host plants will increase the ability of a hyperparasitic bacteria, Pasteuria penetrans and other closely related bacteria, to infect their homologous pest nematodes, whereas non-host root exudates will not. Plant root-exudates from good hosts, poor hosts and non-hosts were characterized by gas chromatographymass spectrometry (GC/MS) and we explore their interaction on the attachment of the hyperparasitic bacterial endospores to homologous and heterologous pest nematode cuticles. Although GC/MS did not identify any individual compounds as responsible for changes in cuticle susceptibility to endospore adhesion, standardized spore binding assays showed that Pasteuria endospore adhesion decreased with nematode age, and that infective juveniles pre-treated with homologous host root-exudates reduced the aging process and increased attachment of endospores to the nematode cuticle, whereas non-host root-exudates did not. We develop a working model in which plant root exudates manipulate the nematode cuticle aging process, and thereby, through increased bacterial endospore attachment, increase bacterial infection of pest nematodes. This we suggest would lead to a reduction of plant-parasitic nematode burden on the roots and increases plant fitness. Therefore, by the judicious manipulation of environmental factors produced by the plant root and by careful crop rotation this knowledge can help in the development of environmentally benign control strategies.
Forfattere
Nobertas Uselis Jonas Viškelis Juozas Lanauskas Mindaugas Liaudanskas Valdimaras Janulis Darius KviklysSammendrag
A study on the influence of planting distances on the growth, productivity and fruit quality of dwarf apple trees in a 15- to 18-year-old orchard was carried out at the Institute of Horticulture, Lithuanian Research Centre for Agriculture and Forestry. Trees of the apple (Malus × domestica Borkh) cultivar ‘Auksis’ on rootstock P 60 were planted at distances of 3 × 1.5, 3 × 1.25, 3 × 1.00 m and 3 × 0.75 m. With increasing density of fruit trees, single-tree growth, generative development and yield were significantly reduced. The opposite results were obtained when these parameters were evaluated per unit area. Yield and fruit quality measurements were made at two canopy heights: 0–1.5 and 1.5–2.5 m. In the upper part of the fruit tree canopy, fruit average weight and diameter were higher, while the colour was more intense and less dependent on the planting density of fruit trees. In the lower part of the canopy, fruit quality was inferior and with increasing fruit tree density it further deteriorated. Planting distances had a significant effect on the accumulation of sugar, soluble solids and dry matter content: greater planting distances resulted in increased sugar content from 10.97% to 11.90%, soluble solids – from 12.30% to 13.17% and dry matter content – from 13.80% to 14.80%. Conversely, higher accumulation of phenolic and triterpenic compounds in apple fruits was found with decreasing planting distances. A significant increase of phenolic compounds from 2.91 up to 4.03 mg g-1 DW (dry weight) was recorded at the upper part of the canopy, while an increase of triterpens from 12.9 up to 16.07 mg g-1 DW – at the lower part of the canopy. The best productivity and fruit quality of ‘Auksis’ apple trees on P 60 rootstock at the full bearing stage were obtained, when fruit trees had been spaced at 3 × 1.25 m. Key words: fruit biochemical composition, fruit colour, Malus × domestica, planting system.
Sammendrag
Organic industrial and household waste is increasingly used in biogas plants to produce bioenergy, generating at the same time extensive amounts of organic residues, called biogas digestates. While agricultural soils can benefit from the organic matter and nutrients, in particular nitrogen and phosphorus, contained in biogas digestates, we need to assess the environmental and health risks associated to the undesirable substances that may come along. Among those, only a few are covered by actual regulations. For instance, the quantity of plastic materials below 4 mm in biogas digestate is currently not limited to any threshold, despite its likely occurrence in organic waste (waste bag remains and wrong waste sorting) and persistence in the environment. The aim of our study was identify and quantify plastic materials in digestates from Norwegian biogas plants, that are using various types of organic waste sources (e.g. sewage sludge, food waste, animal manure). In addition, a lab-scale experiment was set up to assess the physical and chemical transformations undergone during biogas processes by plastic materials commonly found in digestates. The methods used in our study included simultaneous thermal analysis coupled to Fourier transform-Infrared spectroscopy (for analysis of polymer composition), scanning electron microscopy (for assessment of physical transformations), and a range of physical and chemical extractions for recovering plastic materials from biogas digestates. While all digestates complied with current regulations, plastic particles with a size of 0.2-3 mm made up to 1% (on dry mass basis) of the samples analyzed. Analysis of the polymeric composition of the recovered plastic fragments confirmed that they originated both from the waste bags themselves (shredded during the first steps of waste handling) and from wrong waste sorting. In addition, the lab-scale biogas treatment was shown to considerably change the structure of the studied plastic materials, illustrating a pathway for the formation of secondary microplastics. Some analytical challenges linked to the size and aging of the plastic materials, as well as the complex composition of the digestates, will be discussed. From a broader perspective, a few options will be presented to address the presence of plastic materials in biogas digestates, and thereby minimize the risk associated to their use as soil amendment.
Forfattere
Claire CoutrisSammendrag
No abstract has been registered
Forfattere
Claire CoutrisSammendrag
No abstract has been registered
Forfattere
Boris B. Demenou Jérémy Migliore Myriam Heuertz Franck K. Monthe Dario Isidro Ojeda Alayon Jan J. Wieringa Gilles Dauby Laura Albreht Arthur Boom Olivier J. HardySammendrag
Paleo-environmental data show that the distribution of African rain forests was affected by Quaternary climate changes. In particular, the Dahomey Gap (DG) – a 200 km wide savanna corridor currently separating the West African and Central African rain forest blocks and containing relict rain forest fragments – was forested during the mid-Holocene and possibly during previous interglacial periods, whereas it was dominated by open vegetation (savanna) during glacial periods. Genetic signatures of past population fragmentation and demographic changes have been found in some African forest plant species using nuclear markers, but such events appear not to have been synchronous or shared across species. To better understand the colonization history of the DG by rain forest trees through seed dispersal, the plastid genomes of two widespread African forest legume trees, Anthonotha macrophylla and Distemonanthus benthamianus, were sequenced in 47 individuals for each species, providing unprecedented phylogenetic resolution of their maternal lineages (857 and 115 SNPs, respectively). Both species exhibit distinct lineages separating three regions: 1. Upper Guinea (UG, i.e. the West African forest block), 2. the area ranging from the DG to the Cameroon volcanic line (CVL), and 3. Lower Guinea (LG, the western part of the Central African forest block) where three lineages co-occur. In both species, the DG populations (including southern Nigeria west of Cross River) exhibit much lower genetic diversity than UG and LG populations, and their plastid lineages originate from the CVL, confirming the role of the CVL as an ancient forest refuge. Despite the similar phylogeographic structures displayed by A. macrophylla and D. benthamianus, molecular dating indicates very contrasting ages of lineage divergence (UG diverged from LG since c. 7 Ma and 0.7 Ma, respectively) and DG colonization (probably following the Mid Pleistocene Transition and the Last Glacial Maximum, respectively). The stability of forest refuge areas and repeated similar forest shrinking/expanding events during successive glacial periods might explain why similar phylogeographic patterns can be generated over contrasting timescales.
Sammendrag
The open landscapes produced over centuries by small-scale farming in Norwegian coastal and fjord areas are threatened by agricultural abandonment, raising public concern for maintenance of the species-rich and valuable coastal grasslands. Semi-natural grasslands, traditionally grazed in the spring and fall and mown in summer, are most affected. Two linear programming models, one for small-scale sheep and one for small-scale mixed dairy and meat farms, both described in a separate method article, were developed. In the models is studied effects on production, grazing and land utilization, of altering government financial support among leys on arable land, enclosed farm pasture, grazing animals, and altering the (regulated) prices farmers pay for concentrate feed at the farm level. Sheep grazing can be expanded by intensification through increased fertilization and purchase of concentrate feed. Raising steers instead of bulls on dairy and beef farms with a milk quota would result in more mixed grazing by both sheep and steers, which is advantageous for the landscape. Steers are currently quite rare in Norway and their numbers can be increased with more subsidies for grazing, (Grazing Support (GS)) or by increasing the Regional Environmental Support (RES), a policy instrument targeting local projects for more grazing in specific areas. The current Agriculture and Cultural Landscape (ACL) subsidy payment places a higher value on arable land compared to the more biodiverse farm pastures, resulting in weaker incentives for keeping farm pasture in production. Raising the rate for farm pasture relative to that of arable land in the ACL scheme would result in stronger incentives for keeping such farm pasture in production, and likely increase biodiversity and landscape values. Increased GS for sheep might lead to more purchase of concentrate to keep more animals through the winter and eventually needs to be counteracted with higher prices for concentrated feedstuffs.