Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Abstract
No abstract has been registered
Authors
Marleen Pallandt Bernhard Ahrens Marion Schrumpf Holger Lange Sönke Zaehle Markus ReichsteinAbstract
Soil organic carbon (SOC) is the largest terrestrial carbon pool, but it is still uncertain how it will respond to climate change. Especially the fate of SOC due to concurrent changes in soil temperature and moisture is uncertain. It is generally accepted that microbially driven SOC decomposition will increase with warming, provided that sufficient soil moisture, and hence enough C substrate, is available for microbial decomposition. We use a mechanistic, microbially explicit SOC decomposition model, the Jena Soil Model (JSM), and focus on the depolymerization of litter and microbial residues by microbes. These model processes are sensitive to temperature and soil moisture content and follow reverse Michaelis-Menten kinetics. Microbial decomposition rate V of the substrate [S] is limited by the microbial biomass [B]: V = Vmax * [S] * [B]/(kMB + [B]). The maximum reaction velocity, Vmax, is temperature sensitive and follows an Arrhenius function. Also, a positive correlation between temperature and kMB-values of different enzymes has been empirically shown, with Q10 values ranging from 0.71-2.80 (Allison et al., 2018). Q10 kMB-values for microbial depolymerization of microbial residues would be low compared to those of a (lignified) litter pool. An increase in kMB leads to a lower reaction velocity (V) and V becomes less temperature sensitive at low substrate concentrations. In this work we focus on the following questions: “how do temperature and soil moisture changes affect modelled heterotrophic respiration through the Michaelis-Menten term? Is there a temperature compensation effect on modelled decomposition rate because of the counteracting temperature sensitivities of Vmax and kMB?” We model these interactions under a mean warming experiment (+3.5 °K) as well as three soil moisture experiments: constant soil moisture, a drought, and a wetting scenario.
Abstract
Recent decades have seen increased temperatures and precipitation in the Nordic countries with long-term projections for reduced frost duration and depth. The consequence of these trends has been a gradual shift of delivery volumes to the frost-free season, requiring more agile management to exploit suitable weather conditions. Bearing capacity and trafficability are dependent on soil moisture state and in this context two satellite missions offer potenially useful information on soil moisture levels; NASA’s SMAP (Soil Moisture Active Passive) and ESA’s Sentinel-1. The goal of this pilot study was to quantify the performance of such satellite-based soil moisture variables for modeling forest road bearing capacity (e-module) during the frost-free season. The study was based on post-transport registrations of 103 forest road segments on the coastal and interior side of the Scandinavian mountain range. The analysis focused on roads of three types of surface deposits. Weekly SMAP soil moisture values better explained the variation in road e-module than soil water index (SWI) derived from Sentinel-1. Soil Water Index (SWI), however, reflected the weather conditions typical for operations on the respective surface deposit types. Regression analysis using (i) SMAP-based soil dryness index and (ii) its interaction with surface deposit types, together with (iii) the ratio between a combined SMAP_SWI dryness index and segment-specific depth to water (DTW) explained over 70% of the variation in road e-module. The results indicate a future potential to monitor road trafficability over large supply areas on a weekly level, given further refinement of study methods and variables for improved prediction.
Abstract
In cold climates, the use of de-icing chemicals in the winter can lead to groundwater contamination, especially when used in large quantities, such as at airports. Oslo Airport, Gardermoen, is situated on Norway’s largest rain-fed aquifer. Potassium formate is used to remove ice from runways and propylene glycol from airplanes; the organic parts are degradable. Most of the wells to monitor the spread of de-icing chemicals in the underlying aquifer have well screens near the groundwater level, while the runways and the source of de-icing chemicals are near the groundwater divides, where vertical flow is expected. The objective of this study is to demonstrate the importance of layers and time-varying recharge on the spreading of contaminant plumes in an aquifer near a groundwater divide. This is done with numerical modelling. The model results show increased vertical transport of the added tracer in the presence of horizontal layers, both continuous and discontinuous, in the aquifer. With certain distributions of hydraulic conductivity, Ks, we demonstrate that deeper monitoring wells are required. With the scenarios modelled here, time-varying recharge has a weaker effect on plume distribution. Measured concentrations of potassium and total organic carbon show the cyclic effect of seasonally varying recharge of contaminants, and an asymptotic accumulation of concentration over time, that is consistent with the model runs. In conclusion, groundwater monitoring systems near a groundwater divide should include multi-level samplers to ensure control of the vertical plume movement.
Abstract
With a view to integration into the European Union, the efficiency and competitiveness of the Kosovo’ different sectors (including agriculture) must be improved. This paper assesses the technical efficiency (TE) of horticultural farms through Data Envelopment Analysis (DEA) applying output orientation. It was founded that the TE of these farms is positively affected by their size, with large-size farms presenting overall higher technical efficiency. The research findings indicate that the degree of agricultural education does not have a significant impact on TE, whereas public assistance through subsidies and grants has a substantial and negative impact on TE, as confirmed by statistical analysis.
Abstract
Key message This study compares the measured radial variation in wood stiffness, strength, and density of noble fir, Norway spruce, western hemlock, and western red cedar by developing mixed-effects models for each property using age as the explanatory variable. These models could be used to simulate the effect of rotation length and species choice on sawn wood properties. Context Timber production in Great Britain relies primarily on Sitka spruce. The use of multiple species is desirable to mitigate against biotic and abiotic risks posed to a single species. When considering alternative species, quantifying and modeling radial variation in wood properties is important to determine the potential for sawn timber production at a given rotation length. Aims To build empirical models for the radial variation in wood properties that can account for species. Methods Clear-wood samples were produced along radial transects in trees from four conifer species: Abies procera Rehder, Picea abies (L.) Karst, Tsuga heterophylla (Raf.) Sarg., Thuja plicata Donn. ex D.Don. Modulus of Elasticity, Modulus of Rupture, and density were measured on each species according to established standards. Mixed-effects models were built using ring numbers from the pith and species as explanatory variables. Results The same model forms could be used across the four species. Nonlinear models were developed for the Modulus of Elasticity and density. For the Modulus of Rupture, a linear model was most appropriate. The effect of species in the models was significant. Conclusion At similar rotation lengths, noble fir, Norway spruce, and western hemlock can produce timber with comparable properties to Sitka spruce. Overall, western red cedar would have worse properties for structural use. Keywords MOE, MOR, Radial variation, Tree growth, Alternative species
Authors
Joel Abbey Sherin Jose David Percival Laura Jaakola Samuel K. AsieduAbstract
Botrytis blight is an important disease of wild blueberry [(Vaccinium angustifolium (Va) and V. myrtilloides (Vm))] with variable symptoms in the field due to differences in susceptibility among blueberry phenotypes. Representative blueberry plants of varying phenotypes were inoculated with spores of B. cinerea. The relative expression of pathogenesis-related genes (PR3, PR4), flavonoid biosynthesis genes, and estimation of the concentration of ten phenolic compounds between uninoculated and inoculated samples at different time points were analyzed. Representative plants of six phenotypes (brown stem Va, green stem Va, Va f. nigrum, tall, medium, and short stems of Vm) were collected and studied using qRT-PCR. The expression of targeted genes indicated a response of inoculated plants to B. cinerea at either 12, 24, 48 or 96 h post inoculation (hpi). The maximum expression of PR3 occurred at 24 hpi in all the phenotypes except Va f. nigrum and tall stem Vm. Maximum expression of both PR genes occurred at 12 hpi in Va f. nigrum. Chalcone synthase, flavonol synthase and anthocyanin synthase were suppressed at 12 hpi followed by an upregulation at 24 hpi. The expression of flavonoid pathway genes was phenotype-specific with their regulation patterns showing temporal differences among the phenotypes. Phenolic compound accumulation was temporally regulated at different post-inoculation time points. M-coumaric acid and kaempferol-3-glucoside are the compounds that were increased with B. cinerea inoculation. Results from this study suggest that the expression of PR and flavonoid genes, and the accumulation of phenolic compounds associated with B. cinerea infection could be phenotype specific. This study may provide a starting point for understanding and determining the mechanisms governing the wild blueberry-B. cinerea pathosystem.
Authors
Igor Koloniuk Jana Fránová Jaroslava Pribylová Tatiana Sarkisova Josef Špak Jiunn Luh Tan Rostislav Zemek Radek Cmejla Martina Rejlová Lucie Valentová Jiri Sedlák Jan Holub Jan Skalik Dag-Ragnar Blystad Bijaya Sapkota Zhibo HamborgAbstract
Raspberry plants, valued for their fruits, are vulnerable to a range of viruses that adversely affect their yield and quality. Utilizing high-throughput sequencing (HTS), we identified a novel virus, tentatively named raspberry enamovirus 1 (RaEV1), in three distinct raspberry plants. This study provides a comprehensive characterization of RaEV1, focusing on its genomic structure, phylogeny, and possible transmission routes. Analysis of nearly complete genomes from 14 RaEV1 isolates highlighted regions of variance, particularly marked by indel events. The evidence from phylogenetic and sequence analyses supports the classification of RaEV1 as a distinct species within the Enamovirus genus. Among the 289 plant and 168 invertebrate samples analyzed, RaEV1 was detected in 10.4% and 0.4%, respectively. Most detections occurred in plants that were also infected with other common raspberry viruses. The virus was present in both commercial and wild raspberries, indicating the potential of wild plants to act as viral reservoirs. Experiments involving aphids as potential vectors demonstrated their ability to acquire RaEV1 but not to successfully transmit it to plants.
Authors
Luís F.J. Almeida Ivan F. Souza Luís C.C. Hurtarte Pedro P.C. Teixeira Thiago Inagaki Ivo R. Silva Carsten W. MuellerAbstract
The molecular diversity of the source substrate has been regarded as a significant controller of the proportion of plant material that is either mineralized or incorporated into soil organic matter (SOM). However, quantitative parameters to express substrate molecular diversity remain elusive. In this research, we fractionated leaves, twigs, bark, and root tissues of 13C-enriched eucalypt seedlings into hot water extractables (HWE), total solvent (acetone) extractables (TSE), a cellulosic fraction (CF), and the acid unhydrolyzable residue (AUR). We used 13C NMR spectroscopy to obtain a molecular diversity index (MDI) based on the relative abundance of carbohydrate, protein, lignin, lipid, and carbonyl functional groups within the biochemical fractions. Subsequently, we obtained artificial plant organs containing fixed proportions (25%) of their respective biochemical fractions to be incubated with soil material obtained from a Haplic Ferralsol for 200-days, under controlled temperature (25 ± 1 ◦C) and moisture adjusted to 70–80% of the soil water holding capacity. Our experimental design was a randomized complete block design, arranged according to a factorial scheme including 4 plant organs, 4 biochemical fractions, and 3 blocks as replicates. During the incubation, we assessed the evolution of CO2 from the microcosms after 1, 2, 3, 4, 7, 10, 13, 21, 28, 38, 45, 70, 80, 92, 112, 148, 178 and 200 days from the start of the incubation. After the incubation, soil subsamples were submitted to a density fractionation to separate the light fraction of SOM (LFOM) i.e., with density <1.8 g cm 3. The heavy fraction remaining was submitted to wetsieving yielding the sand-sized SOM (SSOM) and the mineral-associated SOM (MAOM), with particle-size greater and smaller than 53 μm, respectively. We found that HWE and AUR exhibited comparatively higher MDIs than the TSE and CF. During the incubation, HWE and CF were the primary sources of 13C-CO2 from all plant organs and after 92 days, the respiration of the TSE of bark and roots increased. Otherwise, the AUR contributed the least for the release of 13C-CO2. There were no significant relationships between the MDI and the amount of 13C transferred into the LFOM or SSOM. Otherwise, the transfer of 13C into the MAOM increased as a linear-quadratic function of MDI, which in turn was negatively correlated with the total 13C-CO2 loss. Overall, the MDI exerted a stronger control on the 13C-labeled MAOM than on 13C-CO2 emissions, highlighting the need to improve our ability to distinguish and quantify direct plant inputs from those of microbial origin entering soil C pools.
Authors
Melissa MagerøyAbstract
No abstract has been registered