Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2021
Abstract
No abstract has been registered
Authors
Chen Wu Cecilia Deng Elena Hilario Nick W. Albert Declan Lafferty Ella R. P. Grierson Blue J. Plunkett Caitlin Elborough Ali Saei Catrin S. Günther Hilary Ireland Alan Yocca Patrick P. Edger Laura Jaakola Katja Karppinen Adrian Grande Ritva Kylli Veli-Pekka Lehtola Andrew C. Allan Richard V. Espley David ChagnéAbstract
No abstract has been registered
Authors
Dag Fjeld Kari Väätäinen Henrik von Hofsten Daniel Noreland Ingeborg Callesen Andis LazdinsAbstract
Transport cost calculations are fundamental for most types of transport research. Applications can range from estimating the cost benefits of developing transport technologies (e.g. increased truck GVWs) to comparing profitability between alternative infrastructure investments (e.g. rail or sea terminals). Most stakeholders rely on a favourite spreadsheet, however these vary considerably with respect to functionality, resolution and transparency. During 2019 and 2020 the NB Nord Road and Transport group has worked towards a common Nordic-Baltic costing framework for road, rail and sea transport. The goal has been to propose a general model per transport method which is user-friendly, while retaining the necessary resolution and functionality to model actual costs for specific transport orders or contracts. The handbook provides: a) complete explanation of its formulas, b) calculation examples and c) a corresponding Excel spreadsheet...
Abstract
Distribution modeling methods are used to provide occurrence probability surfaces for modeled targets. While most often used for modeling species, distribution modeling methods can also be applied to vegetation types. However, surfaces provided by distribution modeling need to be transformed into classified wall-to-wall maps of vegetation types to be useful for practical purposes, such as nature management and environmental planning. The paper compares the performance of three methods for assembling predictions for multiple vegetation types, modeled individually, into a wall-to-wall map. The authors used grid-cell based probability surfaces from distribution models of 31 vegetation types to test the three assembly methods. The first, a probability-based method, selected for each grid cell the vegetation type with the highest predicted probability of occurrence in that cell. The second, a performance-based method, assigned the vegetation types, ordered from high to low model performance, to a fraction of the grid cells given by the vegetation type’s prevalence in the study area. The third, a prevalence-based method, differed from the performance-based method by assigning vegetation types in the order from low to high prevalence. Thus the assembly methods worked in two principally different ways: the probability-based method assigned vegetation types to grid cells in a cell-by-cell manner, and both the performance-based method and prevalence-based method assigned them in a type-by-type manner. All methods were evaluated by use of reference data collected in the field, more or less independently of the data used to parameterize the vegetation-type models. Quantity, allocation, and total disagreement, as well as proportional dissimilarity metrics, were used for evaluation of assembly methods. Overlay analysis showed 38.1% agreement between all three assembly methods. The probability-based method had the lowest total disagreement with, and proportional dissimilarity from, the reference datasets, but the differences between the three methods were small. The three assembly methods differed strongly with respect to the distribution of the total disagreement on its quantity and allocation components: the cell-by-cell assignment method strongly favored allocation disagreement and the type-by-type methods strongly favored quantity disagreement. The probability-based method best reproduced the general pattern of variation across the study area, but at the cost of many rare vegetation types, which were left out of the assembled map. By contrast, the prevalence-based and performance-based methods represented vegetation types in accordance with nationwide area statistics. The results show that maps of vegetation types with wall-to-wall coverage can be assembled from individual distribution models with a quality acceptable for indicative purposes, but all the three tested methods currently also have shortcomings. The results also indicate specific points in the methodology for map assembly that may be improved. area frame survey, assembly strategies, distribution modeling, spatial probabilities, vegetation mapping, vegetation types
Authors
Michal Hájek Borja Jiménez-Alfaro Ondřej Hájek Lisa Brancaleoni Marco Cantonati Michele Carbognani Anita Dedić Daniel Dítě Renato Gerdol Petra Hájková Veronika Horsáková Florian Jansen Jasmina Kamberović Jutta Kapfer Tiina Hilkka Maria Kolari Mariusz Lamentowicz Predrag Lazarević Ermin Mašić Jesper Erenskjold Moeslund Aaron Pérez-Haase Tomáš Peterka Alessandro Petraglia Eulàlia Pladevall-Izard Zuzana Plesková Stefano Segadelli Yuliya Semeniuk Patrícia Singh Anna Šímová Eva Šmerdová Teemu Tahvanainen Marcello Tomaselli Yuliya Vystavna Claudia Biţă-Nicolae Michal HorsákAbstract
Water resources and associated ecosystems are becoming highly endangered due to ongoing global environmental changes. Spatial ecological modelling is a promising toolbox for understanding the past, present and future distribution and diversity patterns in groundwater-dependent ecosystems, such as fens, springs, streams, reed beds or wet grasslands. Still, the lack of detailed water chemistry maps prevents the use of reasonable models to be applied on continental and global scales. Being major determinants of biological composition and diversity of groundwater-dependent ecosystems, groundwater pH and calcium are of utmost importance. Here we developed an up-to-date European map of groundwater pH and Ca, based on 7577 measurements of near-surface groundwater pH and calcium distributed across Europe. In comparison to the existing European groundwater maps, we included several times more sites, especially in the regions rich in spring and fen habitats, and filled the apparent gaps in eastern and southeastern Europe. We used random forest models and regression kriging to create continuous maps of water pH and calcium at the continental scale, which is freely available also as a raster map (Hájek et al., 2020b; https://doi.org/10.5281/zenodo.4139912). Lithology had a higher importance than climate for both pH and calcium. The previously recognised latitudinal and altitudinal gradients were rediscovered with much refined regional patterns, as associated with bedrock variation. For ecological models of distribution and diversity of many terrestrial ecosystems, our new map based on field groundwater measurements is more suitable than maps of soil pH, which mirror not only bedrock chemistry but also vegetation-dependent soil processes.
Authors
Barry Antonio Costa-Pierce Abagail Bockus Bela H. Buck Sander van den Burg Thierry Chopin João Gomes Ferreira Nils Goseberg Kevin Heasman Johan Johansen Sandra Shumway Neil A. Sims Albert G. J. TaconAbstract
recent publication by Belton et al. raises points for policy-makers and scientists to consider with respect to the future of aquaculture making recommendations on policies and investments in systems and areas of the world where aquaculture can contribute most. Belton et al. take an ‘us versus them’ approach separating aquaculture by economics, livelihood choices, and water salinity. They conclude “that marine finfish aquaculture in offshore environments will confront economic, biophysical, and technological limitations that hinder its growth and prevent it from contributing significantly to global food and nutrition security.” They argue that land-based freshwater aquaculture is a more favorable production strategy than ocean/marine aquaculture; they disagree with government and non-governmental organizations spatial planning efforts that add new aquaculture to existing ocean uses; they advocate for an open commons for wild fisheries as opposed to aquaculture; and they oppose ‘open ocean’ aquaculture and other types of industrial, capital-intensive, ‘carnivorous’ fish aquaculture. They discredit marine aquaculture rather than explain how all aquaculture sectors are significantly more efficient and sustainable for the future of food than nearly all land-based animal protein alternatives. As an interdisciplinary group of scientists who work in marine aquaculture, we disagree with both the biased analyses and the advocacy presented by Belton et al. Marine aquaculture is growing and is already making a significant contribution to economies and peoples worldwide. None of the concerns Belton et al. raise are new, but their stark statement that farming fish in the sea cannot ‘nourish the world’ misses the mark, and policy-makers would be wrong to follow their misinformed recommendations.
Authors
Qiuzhen Chen Karlheinz Knickel Mehreteab Tesfai John Sumelius Alice Turinawe Rosemary Emegu Isoto Galyna MedynaAbstract
An important goal across Sub-Saharan Africa (SSA), and globally, is to foster a healthy nutrition. A strengthening of the diversity, sustainability, resilience and connectivity of food systems is increasingly seen as a key leverage point. Governance arrangements play a central role in connecting sustainable, resilient farming with healthy nutrition. In this article, we elaborate a framework for assessing, monitoring and improving the governance of food systems. Our focus is on food chains in six peri-urban and urban regions in SSA. A literature review on food chain governance and a mapping of current agri-food chains in the six regions provide the basis for the elaboration of an indicator-based assessment framework. The framework is adapted to the specific conditions of SSA and related goals. The assessment framework is then used to identify the challenges and opportunities in food chain governance in the six regions. The first testing of the framework indicates that the approach can help to identify disconnects, conflicting goals and tensions in food systems, and to formulate strategies for empowering agri-food chain actors in transitioning toward more efficient, equitable and sustainable agri-food systems. The article is concluded with a brief reflection on the strengths and weaknesses of the framework and suggests further testing and refinement.
Authors
Daniel Powell Ewald Groβe-Wilde Paal Krokene Amit Roy Amrita Chakraborty Christer Löfstedt Heiko Vogel Martin N. Andersson Fredrik SchlyterAbstract
Conifer-feeding bark beetles are important herbivores and decomposers in forest ecosystems. These species complete their life cycle in nutritionally poor substrates and some can kill enormous numbers of trees during population outbreaks. The Eurasian spruce bark beetle (Ips typographus) can destroy >100 million m3 of spruce in a single year. We report a 236.8 Mb I. typographus genome assembly using PacBio long-read sequencing. The final phased assembly has a contig N50 of 6.65 Mb in 272 contigs and is predicted to contain 23,923 protein-coding genes. We reveal expanded gene families associated with plant cell wall degradation, including pectinases, aspartyl proteases, and glycosyl hydrolases. This genome sequence from the genus Ips provides timely resources to address questions about the evolutionary biology of the true weevils (Curculionidae), one of the most species-rich animal families. In forests of today, increasingly stressed by global warming, this draft genome may assist in developing pest control strategies to mitigate outbreaks.
Authors
Habtamu AlemAbstract
Previous application of the stochastic frontier model and subsequent measurement of the performance of the crop sector can be criticized for the estimated production function relying on the assumption that the underlying technology is the same for different agricultural systems. This paper contributes to estimating regional efficiency and the technological gap in Norwegian grain farms using the stochastic metafrontier approach. For this study, we classified the country into regions with district level of development and, hence, production technologies. The dataset used is farm-level balanced panel data for 19 years (1996–2014) with 1463 observations from 196 family farms specialized in grain production. The study used the true random effect model and stochastic metafrontier analysis to estimate region-level technical efficiency (TE) and technology gap ratio (TGR) in the two main grain-producing regions of Norway. The result of the analysis shows that farmers differ in performance and technology use. Consequently, the paper gives some regionally and farming system-based policy insights to increase grain production in the country to achieve self-sufficiency and small-scale farming in all regions.
Authors
Marie Vestergaard Henriksen Guillaume Latombe David G. Chapple Steven L. Chown Melodie A. McGeochAbstract
1. Ecological network structure is maintained by a generalist core of common species. However, rare species contribute substantially to both the species and functional diversity of networks. Capturing changes in species composition and interactions, measured as turnover, is central to understanding the contribution of rare and common species and their interactions. Due to a large contribution of rare interactions, the pairwise metrics used to quantify interaction turnover are, however, sensitive to compositional change in the interactions of, often rare, peripheral specialists rather than common generalists in the network. 2. Here we expand on pairwise interaction turnover using a multi-site metric that enables quantifying turnover in rare to common interactions (in terms of occurrence of interactions). The metric further separates this turnover into interaction turnover due to species turnover and interaction rewiring. 3. We demonstrate the application and value of this method using a host–parasitoid system sampled along gradients of environmental modification. 4. In the study system, both the type and amount of habitat needed to maintain interaction composition depended on the properties of the interactions considered, that is, from rare to common. The analyses further revealed the potential of host switching to prevent or delay species loss, and thereby buffer the system from perturbation. 5. Multi-site interaction turnover provides a comprehensive measure of network change that can, for example, detect ecological thresholds to habitat loss for rare to common interactions. Accurate description of turnover in common, in addition to rare, species and their interactions is particularly relevant for understanding how network structure and function can be maintained.