Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2020
Authors
Simo Maduna Adam Vivian-Smith Ólöf Dóra Bartels Jónsdóttir Albert Imsland Cornelya Klutsch Tommi Nyman Hans Geir Eiken Snorre HagenAbstract
The lumpfish Cyclopterus lumpus is commercially exploited in numerous areas of its range in the North Atlantic Ocean, and is important in salmonid aquaculture as a biological agent for controlling sea lice. Despite the economic importance, few genetic resources for downstream applications, such as linkage mapping, parentage analysis, marker-assisted selection (MAS), quantitative trait loci (QTL) analysis, and assessing adaptive genetic diversity are currently available for the species. Here, we identify both genome- and transcriptome-derived microsatellites loci from C. lumpus to facilitate such applications. Across 2,346 genomic contigs, we detected a total of 3,067 microsatellite loci, of which 723 were the most suitable ones for primer design. From 116,555 transcriptomic unigenes, we identified a total of 231,556 microsatellite loci, which may indicate a high coverage of the available STRs. Out of these, primer pairs could only be designed for 6,203 loci. Dinucleotide repeats accounted for 89 percent and 52 percent of the genome- and transcriptome-derived microsatellites, respectively. The genetic composition of the dominant repeat motif types showed differences from other investigated fish species. In the genome-derived microsatellites AC/GT (67.8 percent), followed by AG/CT (15.1 percent) and AT/AT (5.6 percent) were the major motifs. Transcriptome-derived microsatellites showed also most dominantly the AC/GT repeat motif (33 percent), followed by A/T (26.6 percent) and AG/CT (11 percent). Functional annotation of microsatellite-containing transcriptomic sequences showed that the majority of the expressed sequence tags encode proteins involved in cellular and metabolic processes, binding activity and catalytic reactions. Importantly, STRs linked to genes involved in immune system process, growth, locomotion and reproduction were discovered in the present study. The extensive genomic marker information reported here will facilitate molecular ecology studies, conservation initiatives and will benefit many aspects of the breeding programmes of C. lumpus.
Authors
Vibeke Stærkebye Nørstebø Svein Olav Krøgli Misganu Debella-Gilo Gerardo Alfredo Perez Valdes Kristin Tolstad Uggen Wenche DramstadAbstract
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Authors
Geir Wæhler GustavsenAbstract
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Authors
Xiao Huang Mats Höglind Akanegbu Justice Knut Bjørkelo Torben Christensen Kjetil Fadnes Teresa Gómez de la Bárcena Per-Erik Jansson Åsa Kasimir Bjørn Kløve Anders Lyngstad Mikhail Mastepanov Hannu Marttila Marcel Van Oijen Ina Pohle Jagadeesh Yeluripati Hanna Marika SilvennoinenAbstract
Cultivated organic soils account for ~7% of Norway’s agricultural land area, and they are estimated to be a significant source of greenhouse gas (GHG) emissions. The project ‘Climate smart management practices on Norwegian organic soils’ (MYR), commissioned by the Research Council of Norway (decision no. 281109), aims to evaluate GHG (e.g. carbon dioxide, methane and nitrous oxide) emissions and impacts on biomass productivity from three land use types (cultivated, abandoned and restored) on organic soils. At the cultivated sites, impacts of drainage depth and management intensity will be measured. We established experimental sites in Norway covering a broad range of climate and management regimes, which will produce observational data in high spatiotemporal resolution during 2019-2022. Using state-of-the-art modelling techniques, MYR aims to predict the potential GHG mitigation under different scenarios (e.g. different water table depth, management practices and climate pattern). Four models (BASGRA, DNDC, Coup and ECOSSE) will be further developed according to the physical/chemical properties of peat soil and then used independently in simulating biogeochemical processes and biomass dynamics in the different land uses. Robust parameterization schemes for each model to improve the predictive accuracy will be derived from a new dataset collected from multiple experimental sites in the Nordic region. Thereafter, the models will be used in the regional simulation to present the spatial heterogeneity in large scale. Eventually, a multi-model ensemble prediction will be carried out to provide scenario analyses by 2030 and 2050. By integrating experimental results and modelling, the project aims at generating useful information for recommendations on environment-friendly use of Norwegian peatlands.
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Authors
Hugh Morris Ari Hietala Steven Jansen Javier Ribera Sabine Rosner Khalifah A. Salmeia Francis W. M. R. SchwarzeAbstract
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Authors
Sille Rebane Kalev Jõgiste Andres Kiviste John A. Stanturf Marek MetslaidAbstract
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