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Publications

NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.

2023

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The root-burrowing nematode, Radopholus similis, is reputedly the most damaging nematode pest of banana and responsible for major production losses. In this study, the endophytic potential of 13 fungal isolates was assessed for the management of R. similis in East African Highland bananas (‘Ng’ombe’). All isolates successfully colonised tissue-cultured banana roots, with isolates from Trichoderma, Fusarium and Hypocrea producing the highest (⩾49.1%) and Beauveria isolates the lowest (⩽14.4%) colonisation. The fungal endophytes T. asperellum (ICIPE 700) and H. lixii (ICIPE 697) were the most effective in reducing R. similis densities (>81%) relative to the non-inoculated control. However, the combined inoculation of ICIPE 700 and ICIPE 697 led to greater suppression of R. similis (>21%) relative to individual inoculation. Suppression of R. similis following inoculation of banana roots with ICIPE 700 and/or ICIPE 697 was associated with the significant upregulation of the defence-related gene PR-1, the cell signalling gene calmodulin Ca2+ and the cell-wall-strengthening gene β-1,3-glucan synthase. This study demonstrates the potential for nematode management in bananas with fungal endophytes, especially using the isolates ICIPE 700 and ICIPE 697 when combined.

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The legume cavalcade, Centrosema pascuorum, is used extensively as a cover crop and as a component of conservation agriculture systems. It is also an attractive rotation or cover crop for the management of root-knot nematodes (RKN; Meloidogyne spp.) as it is a non-host. RKN are persistent pests that are well known to be difficult to control. However, the mechanisms governing the non-host status of cavalcade is unknown. The current study established that cavalcade leaves are toxic to RKN as either aqueous extracts or soil amendments. Bioassays conducted using Meloidogyne javanica showed that a 90% concentration of aqueous extract derived from 1-month-old cavalcade leaves (89 mg crude extract ml−1) suppressed nematode hatch (82.9%) and killed infective second-stage juveniles of M. javanica (85.3%). Soil amendments with 1% (w/w) of 1-month-old cavalcade leaves (0.99 mg crude extract g−1 soil) also provided effective control of M. javanica in the glasshouse on okra. One-month-old leaves appeared more effective than 2- or 3-month-old leaves. The soil amendments had no adverse phytotoxic effect on okra seed germination. Our study demonstrates the potential for using cavalcade leaves or extracts to manage RKN. This may be due to the nematicidal activity of the various compounds in the leaves, such as flavonoids, phenols and terpenoids, which should be further assessed.

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The Formicoxenus genus-group comprises six genera within the tribe Crematogastrini. The group is well known for repeated evolution of social parasitism among closely related taxa and cold-adapted species with large distribution ranges in the Nearctic and Palearctic regions. Previous analyses based on nuclear markers (ultraconserved elements, UCEs) and mitochondrial genes suggest close relationship between Formicoxenus Mayr, 1855, Leptothorax Mayr, 1855 and Harpagoxenus Forel, 1893. However, scant sampling has limited phylogenetic assessment of these genera. Also, previous phylogeographic analyses of L. acervorum (Fabricius, 1793) have been limited to its West-Palearctic range of distribution, which has provided a narrow view on recolonization, population structure and existing refugia of the species. Here, we inferred the phylogenenetic history of genera within the Formicoxenus genus-group and reconstructed the phylogeography of L. acervorum with more extensive sampling. We employed three datasets, one data set consisting of whole mitochondrial genomes, and two data sets of sequences of the COI-5P (658 bp) with different number of specimens. The topologies of previous nuclear and our inferences based on mitochondrial genomes were overall congruent. Further, Formicoxenus may not be monophyletic. We found several monophyletic lineages that do not correspond to the current species described within Leptothorax, especially in the Nearctic region. We identified a monophyletic L. acervorum lineage that comprises both Nearctic and Palearctic locations. The most recent expansion within L. acervorum probably occurred within the last 0.5 Ma with isolated populations predating the Last Glacial Maximum (LGM), which are localized in at least two refugial areas (Pyrenean and Northern plateau) in the Iberian Peninsula. The patterns recovered suggest a shared glacial refugium in the Iberian Peninsula with cold-adapted trees that currently share high-altitude environments in this region.

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Elymus repens is a problematic perennial weed in annual crops, grasslands and leys. Rhizome fragmentation by vertical disking can potentially reduce E. repens abundance with minimal tillage, but data are lacking on its efficiency in forage production. In a two-year study (2017–2018, 2018–2019) conducted in two forage grass-clover leys that were mostly weed-free except for large E. repens populations, this study examined effects on forage yield, botanical composition, and E. repens rhizome biomass of rhizome fragmentation at significant growth initiation in spring (early rhizome fragmentation, ERF) and/or when conditions allowed after the first forage cut (late rhizome fragmentation, LRF). Cold, wet springs and hard, dry soil in summer delayed treatment in both treatment years, to late spring (ERF) and late summer/early autumn (LRF). In the treatment year, ERF reduced first-cut forage yield by 44% compared with no rhizome fragmentation, while LRF decreased second- and third-cut yield by 24% and 53%, respectively. In the year after treatment, ERF increased total forage yield by on average 10%, while LRF had no effect. Over both years, combined forage yield was reduced by 11% by ERF and 4% by LRF. Both treatments reduced E. repens rhizome biomass, but inconsistently (ERF by 25% in one year only, LRF by 24% at one of two sites). ERF reduced E. repens incidence in forage by 10% in the treatment year, but had no effect in the following year. Thus, rhizome fragmentation by vertical disking can reduce E. repens abundance in grass-clover leys, but the effect is inconsistent and forage yield can be impaired, especially in swards with much E. repens. Moreover, disking is hampered by hard, dry soil conditions.

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This study applied comprehensive two-dimensional gas chromatography time-of-flight mass spectrometry (GC × GC-TOF-MS) for the analysis of 100 pesticides (77 organophosphorus and 23 organochlorines) in six typical plant matrices with high protein, starch, acid, or oil content. Different sorbents were evaluated in the clean-up step of the QuEChERS method, and optimized sorbent combinations were obtained for each individual matrix. Good linearity of the calibration curves of matrix-matched was obtained (R2 ≥ 0.9853). The mean recoveries and relative standard deviations at fortification levels of 10 and 50 μg/kg ranged from 72.6 to 117.5 and 0.1 to 19.9%, respectively. Phenolic antioxidants, glycosides, phosphorus esters, linoleic acid, unsaturated fatty acids, and other interferences in the individual plant matrix were identified. The results demonstrated that GC × GC-TOF-MS is helpful in the separation of the co-eluted pesticides and the identification of interferences in complex plant matrices.