Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2018
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We present a methodology for distinguishing between three types of animal movement behavior (foraging, resting, and walking) based on high-frequency tracking data. For each animal we quantify an individual movement path. A movement path is a temporal sequence consisting of the steps through space taken by an animal. By selecting a set of appropriate movement parameters, we develop a method to assess movement behavioral states, reflected by changes in the movement parameters. The two fundamental tasks of our study are segmentation and clustering. By segmentation, we mean the partitioning of the trajectory into segments, which are homogeneous in terms of their movement parameters. By clustering, we mean grouping similar segments together according to their estimated movement parameters. The proposed method is evaluated using field observations (done by humans) of movement behavior. We found that on average, our method agreed with the observational data (ground truth) at a level of 80.75% ± 5.9% (SE).
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Rodrigo B. Onofre J. B. Gatto M. Marin David M. Gadoury Arne Stensvand Mark Rea Andrew Bierman Natalia A. PeresAbstract
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Ari Hietala Isabella Børja Hugh Cross Nina Elisabeth Nagy Halvor Solheim Volkmar Timmermann Adam Vivian-SmithAbstract
European ash (Fraxinus excelsior), a keystone species with wide distribution and habitat range in Europe, is threatened at a continental scale by an invasive alien ascomycete, Hymenoscyphus fraxineus. In its native range of Asia, this fungus is a leaf endophyte with weak parasitic capacity and robust saprobic competence in local ash species that are closely related to European ash. In European ash, H. fraxineus has a similar functional role as in Asia, but the fungus also aggressively kills shoots, resulting in crown dieback and tree death. H. fraxineus is a typical invasive species, as its spread relies on high propagule pressure. While crown dieback of European ash is the most obvious symptom of ash dieback, the annual colonization of ash leaves is a crucial key dependency for the invasiveness of H. fraxineus, since its fruiting bodies are formed on overwintered leaf vein tissues in soil debris. Leaves of European ash host a wide range of indigenous epiphytes, endophytes, facultative parasites and biotrophic fungi, including Hymenoscyphus albidus, a relative of H. fraxineus that competes for the same sporulation niche as the invader. At face value, leaves of European ash are colonized by a large and diverse indigenous mycobiome. In order to understand why this invader became successful in Europe, we discuss and summarize the current knowledge of diversity, seasonal dynamics and traits of H. fraxineus and indigenous fungi associated with leaves of European ash.
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Leonardo Ciaccheri Lorenza Tuccio Andrea A. Mencaglia Anna G. Mignani Ewelina Hallmann Kalina Sikorska-Zimny Stanislaw Kaniszewski Michel Verheul Giovanni AgatiAbstract
Non-destructive tools for evaluating the lycopene content in tomatoes are of great interest to the entire fruit chain because of an increasing demand for beneficial health products. With the aim of developing compact low-cost reflectance sensors for lycopene determination, we compared Partial Least Squares (PLS) prediction models by using either directional or total reflectance in the 500–750 nm range. Directional reflectance at 45° with respect to the LED lighting direction was acquired by means of a compact spectrometer sensor. Total reflectance was acquired through a 50-mm integrating sphere connected to a spectrometer. The analysis was conducted on two hydroponic greenhouse cultivated red tomato varieties, namely the large round ‘Dometica’ (average diameter: 57 mm) and the small cherry ‘Juanita’ (average diameter: 26 mm). For both varieties, the spectral variance of directional reflectance was well correlated to that of total reflectance. The performances of the PLS prediction models were also similar, with R2 of cross-validation between 0.73 and 0.81. The prediction error, relative to the mean lycopene content of full ripe tomatoes, was similar: i.e. around 16–17% for both varieties and sensors. Our results showed that directional reflectance measured by means of portable, low-cost and compact LED-based sensors can be used with an adequate precision for the non-destructive assessment of lycopene in tomatoes.
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No abstract has been registered