Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2013
Authors
Laura JaakolaAbstract
No abstract has been registered
Authors
Katharina Bäutigam Kelly J. Vining Clément Lafon-Placette Carl Gunnar Fossdal Marie Mirouze José Gutiérrez Marcos Silvia Fluch Mario Fernández Fraga M. Ángeles Guevara Dolores Abarca Øystein Johnsen Stéphane Maury Steven H. Strauss Malcolm M. Campbell Antje Rohde Carmen Díaz-Sala María-Teresa CerveraAbstract
Epigenetic variation is likely to contribute to the phenotypic plasticity and adaptative capacity of plant species, and may be especially important for long-lived organisms with complex life cycles, including forest trees. Diverse environmental stresses and hybridization/polyploidization events can create reversible heritable epigenetic marks that can be transmitted to subsequent generations as a form of molecular “memory”. Epigenetic changes might also contribute to the ability of plants to colonize or persist in variable environments. In this review, we provide an overview of recent data on epigenetic mechanisms involved in developmental processes and responses to environmental cues in plant, with a focus on forest tree species. We consider the possible role of forest tree epigenetics as a new source of adaptive traits in plant breeding, biotechnology, and ecosystem conservation under rapid climate change.
Authors
Jarkko Koskela Franҫois Lefèvre Silvio Schüler Hojka Kraigher Ditte C. Olrik Jason Hubert Roman Longauer Michele Bozzano Leena Yrjänä Paraskevi Alizoti Peter Rotach Lorenzo Vietto Sándor Bordács Tor Myking Thröstur Eysteinsson Oudara Souvannavong Bruno Fady Bart De Cuyper Berthold Heinze Georg von Wühlisch Alexis Ducousso Bjerne DitlevsenAbstract
This paper provides a review of theoretical and practical aspects related to genetic management of forest trees. The implementation of international commitments on forest genetic diversity has been slow and partly neglected. Conservation of forest genetic diversity is still riddled with problems, and complexities of national legal and administrative structures. Europe is an example of a complex region where the distribution ranges of tree species extend across large geographical areas with profound environmental differences, and include many countries. Conservation of forest genetic diversity in Europe has been hampered by a lack of common understanding on the management requirements for genetic conservation units of forest trees. The challenge resides in integrating scientific knowledge on conservation genetics into management of tree populations so that recommendations are feasible to implement across different countries. Here, we present pan-European minimum requirements for dynamic conservation units of forest genetic diversity. The units are natural or man-made tree populations which are managed for maintaining evolutionary processes and adaptive potential across generations. Each unit should have a designated status and a management plan, and one or more tree species recognized as target species for genetic conservation. The minimum sizes of the units are set at 500, 50 or 15 reproducing individuals depending on tree species and conservation objectives. Furthermore, silvicultural interventions should be allowed to enhance genetic processes, as needed, and field inventories carried out to monitor regeneration and the population size. These minimum requirements are now used by 36 countries to improve management of forest genetic diversity.
2012
Abstract
No abstract has been registered
Authors
Marie Davey Einar Heegaard Rune Halvorsen Mikael Ohlson Håvard KauserudAbstract
Bryophytes are a dominant vegetation component of the boreal forest, but little is known about their associated fungal communities, including seasonal variation within them.•Seasonal variation in the fungal biomass and composition of fungal communities associated with three widespread boreal bryophytes was investigated using HPLC assays of ergosterol and amplicon pyrosequencing of the internal transcribed spacer 2 (ITS2) region of rDNA.•The bryophyte phyllosphere community was dominated by Ascomycota. Fungal biomass did not decline appreciably in winter (P = 0.272). Significant host-specific patterns in seasonal variation of biomass were detected (P = 0.003). Although seasonal effects were not the primary factors structuring community composition, collection date significantly explained (P = 0.001) variation not attributed to locality, host, and tissue. Community homogenization and a reduction in turnover occurred with the onset of frost events and subzero air and soil temperatures. Fluctuations in the relative abundance of particular fungal groups seem to reflect the nature of their association with mosses, although conclusions are drawn with caution because of potential methodological bias.•The moss-associated fungal community is dynamic, exhibiting seasonal turnover in composition and relative abundance of different fungal groups, and significant fungal biomass is present year-round, suggesting a winter-active fungal community.
Authors
Igor A. Yakovlev Carl Gunnar Fossdal Tore Skrøppa Jorunn Elisabeth Olsen Anne Hopen Jahren Øystein JohnsenAbstract
Conifers are evolutionarily more ancient than their angiosperm counterparts, and thus some adaptive mechanisms and features influenced by epigenetic mechanisms appear more highly displayed in these woody gymnosperms. Conifers such as Norway spruce have very long generation times and long life spans, as well as large genome sizes. This seemingly excessive amount of genomic DNA without apparent duplications could be a rich source of sites for epigenetic regulation and modifications. In Norway spruce, an important adaptive mechanism has been identified, called epigenetic memory. This affects the growth cycle of these trees living in environments with mild summers and cold winters, allowing them to adapt rapidly to new and/or changing environments. The temperature during post-meiotic megagametogenesis and seed maturation epigenetically shifts the growth cycle programme of the embryos. This results in significant and long-lasting phenotypic change in the progeny, such as advance or delay of vital phenological processes of high adaptive value, like bud break and bud set. This phenomenon is not only of important evolutionary significance but has clear practical implications for forest seed production and conservation of forest genetic resources. The underlying molecular mechanism that causes the ‘memory’ in long-lived woody species is currently under investigation. Here we summarize the information related to epigenetic memory regulation in gymnosperms, with special emphasis on conifers. The molecular mechanism behind this is still unknown but transcriptional changes are clearly involved. Epigenetic regulation may be realized through several mechanisms, including DNA methylation, histone modification, chromatin remodelling, small non-coding RNAs and transposable element regulation, of which non-coding RNAs might be one of the most important determinants.
2011
Abstract
Recent research on how the structure and physiological development of red raspberry (Rubus idaeus L.) plants are controlled by genotype and the climatic environment is reviewed. Some older work, specially on plant structure relations, is also included. Physiological differences between annual- and biennial-fruiting plant types are highlighted. One major difference is the different requirements for flower formation. While biennial-fruiting cultivars have an absolute low temperature (≤ approx. 15°C) requirement for floral initiation, annual-fruiting cultivars readily initiate floral primordia at temperatures as high as constant 30°C. Also, while biennial-fruiting cultivars are facultative short-day plants with a critical photoperiod of 15 h at intermediate temperatures, flowering is promoted by long photoperiods in at least some annual-fruiting cultivars. However, the essential difference that determines whether the shoot life-cycle becomes annual or biennial is that, in biennial-fruiting genotypes, floral initiation is linked to the induction of bud dormancy, whereas in annual-fruiting cultivars, floral initiation is followed by direct flower development. Although this is genetically determined, it is a plastic trait that is subject to modification by the environment. Thus, at low temperatures and short photoperiods, the majority of initiated buds do enter dormancy also in annual-fruiting cultivars, with tip-flowering as a result. Practical applications are discussed, and it is concluded that our present physiological knowledge-base provides excellent opportunities for manipulation of raspberry crops for out-of-season production and high yields. It also provides a firm platform for further exploration of the underlying molecular genetics of plant structures and response mechanisms.
Abstract
Aspen (Populus tremula L.) is associated with high biodiversity and provides high-quality forage for wild browsing herbivores in boreal and temperate ecosystems. The long-term persistence of aspen in many regions in Scandinavia has been questioned due to the historically high browsing levels. We here review the basic ecology, genetics and life histories of aspen in a browsing context. Browsers can suppress the regeneration of aspen and the relatively short lifespan of the trees result in frequent regeneration cycles and concurrent exposure to browsers. In the long term, browsing may reduce recruitment and delay maturation, increase mortality and ultimately cause a decline of aspen. Norwegian forest inventory data indicate a reduced recruitment rate of young aspen (diameter at breast height; 60–79 mm) during the last 25 years, but it is unclear whether this is all due to browsing. Regeneration may also be hampered by lack of disturbance. Recent genetic studies have shown that aspen may have substantial regeneration by seeds, which allows for effective migration. The main conclusion of this review is that although browsing may affect demography and local abundance of aspen, it is very unlikely to lead to the eradication of the species in Fennoscandia.
2010
Authors
Chitralekha Nag Dasgupta J. Jose Gilbert Peter Lindblad Thorsten Heidorn Stig A. Borgvang Kari Skjånes Debabrata DasAbstract
Hydrogen production through biological routes is promising because they are environmentally friendly. Hydrogen production through biophotolysis or photofermentation is usually a two stage process. In the first stage CO2 is utilized for biomass production which is followed by hydrogen production in the second stage in anaerobic/sulfur deprived conditions in the next stage. The major challenges confronting the large scale production of biomass/hydrogen are limited not only on the performance of the photo bioreactors in which light penetration in dense cultures is a major bottleneck but also on the microbiology, biochemistry and molecular biology of the organisms. Other dependable factors include area/ volume (A/V) ratio, mode of agitation, temperature and gas exchange. Photobioreactors of different geometries are reported for biohydrogen production-Tubular, Flat plate, Fermentor type etc. Every reactor has its own advantages and disadvantages. No reactor is ideal for this purpose. Airlift, helical tubular and flat plate reactors are found most suitable with respect to biomass production. These bioreactors may be employed for hydrogen production with necessary modifications to overcome the existing bottlenecks like gas hold up, oxygen toxicity and improved agitation system. This review article attempts to focus on existing photobioreactors with respect to biomass generation and hydrogen production and the steps taken to improve its performance through engineering innovation that definitely help in the future construction of photobioreactors.
Authors
Adam ParuchAbstract
This work discusses the potential routes of transport, possible occurrence and predicted fate of parasite eggs corresponding to human pathogens in on-site wastewater treatment systems with Light Weight Aggregates (LWA) media. The discussion is mainly based on scientific evidences supported by practical outcomes derived from a survey of helminth eggs in the specific LWA materials-typical filter media of constructed wetlands (CWs) treating domestic wastewater in Norway. The scientific evidences showed that the greatest reduction in the egg concentrations occurs in septic tanks. The eggs that could pass through the tank trap can be accumulated and effectively eliminated in the filter media of CWs. The practical outcomes did not show any accumulation and the consequent contamination of the LWA media with helminth eggs. Because the outcomes characterised a survey that was carried out for the first time ever on the above-specified filter media and was not replicated, the absence of parasite eggs in the CW filters cannot be definitely stated. However, it could be theoretically assumed that the possibility of finding human parasite eggs originated from domestic wastewater in the LWA filters should be negligible.