Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2010
Authors
Tuula Kantola Mikko Vastaranta Xiaowei Yu Paivi Lyytikainen-Saarenmaa Markus Holopainen Mervi Talvitie Sanna Kaasalainen Svein Solberg Juha HyyppäAbstract
Climate change and rising temperatures have been observed to be related to the increase of forest insect damage in the boreal zone. The common pine sawfly (Diprion pini L.) (Hymenoptera, Diprionidae) is regarded as a significant threat to boreal pine forests. Defoliation by D. pini can cause severe growth loss and tree mortality in Scots pine (Pinus sylvestris L.) (Pinaceae). In this study, logistic LASSO regression, Random Forest (RF) and Most Similar Neighbor method (MSN) were investigated for predicting the defoliation level of individual Scots pines using the features derived from airborne laser scanning (ALS) data and aerial images. Classification accuracies from 83.7% (kappa 0.67) to 88.1% (kappa 0.76) were obtained depending on the method. The most accurate result was produced using RF with a combination of data from the two sensors, while the accuracies when using ALS and image features separately were 80.7% and 87.4%, respectively. Evidently, the combination of ALS and aerial images in detecting needle losses is capable of providing satisfactory estimates for individual trees.
Authors
Svein SolbergAbstract
Four alternative airborne laser scanning (ALS) canopy penetration variables were compared for their suitability for mapping of gap fraction, leaf area index and disturbances in a Scots pine forest. The variables were based on either echo counting or intensity, and on either first or first and last echoes. ALS data and field-measured gap fraction and effective leaf area index (LAIe) were gathered before and after a severe insect defoliation by pine sawflies. LAIe is a commonly used form of leaf area index that is mathematically derived from gap fraction, and includes the areas of foliage, branches and trunks, and which is not corrected for the clumping of foliage. The ALS penetration variables were almost equally strongly related to field-measured gap fraction and LAIe. The estimated slopes in the LAIe models varied from 0.94 to 2.71, and had coefficient of determination R 2 values of 0.92–0.94. They were strongly correlated to each other (R 2 values of 0.95–0.98) and agreed fairly well for temporal changes of LAIe during the summer and the insect defoliation (R 2 values of 0.82–0.95). Counting of first and last echoes produced penetration rates close to the gap fraction, and this penetration variable was able to penetrate tree crowns. Ground-only echoes represented mostly between-tree gaps, and canopy-first-ground-last pulses represented mostly within-canopy gaps. However, the penetration variables based on first and last echoes suffered from the problem that a second echo might be impaired both in low and in tall canopies. In low canopies, two adjacent echoes from the same pulse would be too close in time to be separated by the sensor, while in tall canopies the pulse might apparently be fragmented down through the canopy. The intensity-based penetration variables needed to be supplemented with reflectance values, or at least the ratio between reflectance of the canopy and the ground, and this ratio was estimated from the data. The study demonstrated that one might be able to distinguish between disturbance types, e.g. between defoliation and cutting, by comparing alternative ALS penetration variables. Insect defoliation was dominated by an increase in within-canopy gaps and, correspondingly, the fraction of partly penetrating canopy-first-ground-last pulses. Tree removals from cutting were dominated by increases in between-tree gaps and the corresponding fraction of ground-only pulses.
Abstract
The pinewood nematode (PWN) is one of the worst tree-killing exotic pests in East-Asian countries. The first European record of establishment in Portugal in 1999 triggered extensive surveys and contingency plans for eradication in European countries, including immediate removal of large areas of conifer host trees. Using Norway as an example, we applied a simulation model to evaluate the chance of successful eradication of a hypothetical introduction by the current contingency plan in a northern area where wilting symptoms are not expected to occur. Despite a highly variable spread of nematode infestations in space and time, the probability of successful eradication in 20 years was consistently low (mean 0.035, SE 0.02). The low success did not change significantly by varying the biological parameters in sensitivity analyses (SA), probably due to the late detection of infestations by the survey (mean 14.3 years). SA revealed a strong influence of management parameters. However, a high probability of eradication required unrealistic measures: achieving an eradication probability of 0.99 in 20 years required 10,000 survey samples per year and a host tree removal radius of 8,000 m around each detection point.
Abstract
No abstract has been registered
Abstract
The gas chromatography mass spectrometry (GC-MS) deconvolution reporting software (DRS) from Agilent Technologies has been evaluated for its ability as a screening tool to detect a large number ofpesticides in incurred and fortified samples extracted with acetone/dichloromethane/light petroleum(Mini-Luke method). The detection of pesticides is based on fixed retention times using retention timelocking (RTL) and full scan mass spectral comparison with a partly customer built automated massspectral deconvolution and identification system (AMDIS) database. The GC-MS was equipped with a programmable temperature vaporising (PTV) injector system which enables more sample to be injected.In a blind study of 52 real samples a total number of 158 incurred pesticides were found. In addition to the 85 pesticides found by manual interpretation of GC-NPD/ECD chromatograms, the DRS revealed 73 morepesticides (+46%). The DRS system also shows its potential to discover pesticides which are normally notsearched for (EPN in long beans from Thailand). A spiking experiment was performed to blank matricesof apple, orange and lettuce with 177 different pesticides at concentration levels 0.02 and 0.1 mg/kg. The samples were analysed on GC-MS full scan and the AMDIS match factor was used as a mass spectralquality criterion. The threshold level of the AMDIS match factor was set at 20 to eliminate most of thefalse positives. AMDIS match factors from 20 up to 69 are regarded only as indication of a positive hit andmust be followed by manual interpretation. Pesticides giving AMDIS match factors at ≥70 are regarded as identified. To simplify and decrease the large amount of data generated at each concentration level,the AMDIS match factors ≥20 was averaged (mean AMF) for each pesticide including the commodities and their replicates. Among 177 different pesticides spiked at 0.02 and 0.1 mg/kg level, the percentage of mean AMF values ≥70 were 23% and 80%, respectively. For 531 individual detections of pesticides (177pesticides×3 replicates) giving AMDIS match factor 20 in apple, orange and lettuce, the detection rates at 0.02 mg/kg were 71%, 63% and 72%, respectively. For the 0.1 mg/kg level the detection rates were 89%,85% and 89%, respectively. In real samples some manual interpretation must be performed in addition. However, screening by GC-MS/DRS is about 5-10 times faster compared to screening with GC-NPD/ECDbecause the time used for manual interpretation is much shorter and there is no need for re-injection on GC-MS for the identification of suspect peaks found on GC-NPD/ECD.
Authors
Alemayehu Chala Tameru Alemu Louis K Prom Anne Marte TronsmoAbstract
The severity and temporal dynamics of anthracnose on susceptible (BTx623 and AL70) and resistant lines (2001 PWColl No. 022 and 2001 HararghieColl No. 12) were studied in field plots during the 2007 and 2008 growing seasons in southern Ethiopia. The initial, final and mean anthracnose severities and area under disease progress curves were used as criteria to evaluate the response of the genotypes. Over the two years, the initial, final and mean anthracnose severities ranged from 0.88 to 16.13%, 7.56 to 78.38% and 3.57 to 46%, respectively, while area under disease progress curve averaged for the two years ranged from 221.31 to 2951.88. All the evaluation criteria showed highly significant variations (p<0.0001) among the genotypes and the Ethiopian genotype 2001 PWColl No. 022 consistently had the lowest disease levels regardless of the evaluation criteria and growing season. The disease appeared rather late and progressed slowly on this genotype. On the other hand, the exotic cultivar, BTx623, showed the most sever anthracnose infection. Initial anthracnose severity was significantly higher and the disease developed rapidly on BTx623 than on the other three genotypes. The other two genotypes showed intermediate response and progression of the disease. Correlation and regression analyses revealed a significantly strong association between rainfall and anthracnose severity but temperature appeared to have little/no impact on the development of anthracnose in the field. The present study confirmed the effect of both host genotypes and weather, particularly rain on anthracnose development. The Ethiopian sorghum genotype 2001 PWColl No. 022 was recommended as stable source of resistance against this important disease.
Abstract
The primary aim of this study was to investigate the suitability of interferometric X-band SAR (InSAR) for inventory of boreal forest biomass. We investigated the relationship between SRTM X-band InSAR height and above-ground biomass in a study area in southern Norway. We generated biomass reference data for each SRTM pixel from a field inventory in combination with airborne laser scanning (ALS). One set of forest inventory plots served for calibrating ALS based biomass models, and another set of field plots was used to validate these models. The biomass values obtained in this way ranged up to 250 t/ha at the stand level. The relationship between biomass and InSAR height was linear, no apparent saturation effect was present, and the accuracy was high (RMSE = 19%). The relationship differed between Norway spruce and Scots pine, where an increase in InSAR height of 1 m corresponded to an increase in biomass of 9.9 and 7.0 t/ha. respectively. Using a high-quality terrain model from ALS enabled biomass to be estimated with a higher accuracy as compared to using a terrain model from topographic maps. Interferometric X-band SAR appears to be a promising method for forest biomass monitoring. (C) 2010 Elsevier Inc. All rights reserved.
Authors
Petter D. Jenssen Tore Krogstad Adam Paruch Trond Mæhlum Kinga Adam Carlos A. Arias Arve Heistad Lena Jonsson Daniel Hellström Hans Brix Markku Yli-Halla Lasse Vråle Matti ValveAbstract
Nine filter beds have been constructed in the Nordic countries, Denmark, Finland, Norway and Sweden. Filter beds consist of a septic tank followed by an aerobic pre-treatment biofilter and a subsequent saturated flow grass-covered filter. Thus, filter beds are similar to subsurface flow constructed wetlands with pre-treatment biofilters. but do not have wetland plants with roots submerged into the saturated filter. All saturated filters contain Filtralite (R) P. a light-weight expanded clay aggregate possessing high phosphorus sorption capacity. The filter bed systems showed stable and consistent performance during the. testing period of 3 years. Removal of organic matter measured as biochemical oxygen demand (BUD) was >80%, total phosphorus (TP) >94% and total nitrogen (TN) ranged from 32 to 66%. Effluent concentrations of fecal indicator bacteria met the European bathing water quality criteria in all systems. One system was investigated for virus removal and somatic viruses were not detected in the effluent. The investigations revealed that the majority of the BOD and nitrogen removal occurred in the pre-treatment filters and the phosphorus and bacteria removal was more prominent in the saturated filters. The saturated filters could be built substantially smaller than the current design guidelines without sacrificing treatment performance. The used filter material met the Norwegian regulations for reuse in agriculture with respect to heavy metals, bacteria and parasites. When saturated with phosphorus, the light-weight aggregate. Filtralite (R) P used in the saturated bed is a suitable phosphorus fertilizer and additionally has a liming effect. (C) 2010 Elsevier B.V. All rights reserved.
Abstract
Dissolved organic nitrogen (DON) plays an important ecological role in forest ecosystems, and its concentration is related to that of dissolved organic carbon (DOC). We investigated DON concentrations and ratios of DOC to DON in throughfall and soil waters in 16 Norway spruce and two Scots pine forest stands sampled at weekly intervals between 1996 and 2006. The stands are all included in the ICP Forests Level II monitoring program and are located throughout Norway. DON concentrations were significantly and positively related to DOC concentrations in throughfall (r (2) = 0.72, p < 0.0001) and soil water at 5, 15, and 40 cm (r (2) = 0.86, 0.32, and 0.84 and p < 0.0001, 0.04, and < 0.0001, respectively). At most sites, the annual median DOC/DON ratio in throughfall ranged from 20.3 to 55.5, which is lower than values in soil water, which ranged from 24.5 to 81.3, gradually decreasing with soil depth. DON concentrations varied seasonally in throughfall at many plots and in soil water at 5-cm depth at one plot only, with higher values in the growing season, but there was no noticeable seasonality at greater depth. The ratios of DOC/DON in soil water were significantly positively related to the C/N ratio in soil at the same depth. Above-ground litter input was the main factor having a significant, negative relationship to DOC/DON in soil water at all depths studied. This might reflect the effect of site conditions on both DOC/DON ratios and litter quantity.
Authors
Venche Talgø G. Chastagner I. M. Thomsen T. Cech K. Riley K. Lange Sonja Klemsdal Arne StensvandAbstract
Current season needle necrosis (CSNN) has been a serious foliage disorder on true fir Christmas trees and bough material in Europe and North America for more than 25 y. Approximately 2-4 weeks after bud break, needles develop chlorotic spots or bands that later turn necrotic. The symptoms have been observed on noble fir (Abies procera), Nordmann fir (A. nordmanniana) and grand fir (A. grandis) on both continents. CSNN was reported as a physiological disorder with unknown aetiology from USA, Denmark, and Ireland, but was associated with the fungus Kabatina abietis in Germany, Austria and Norway. In 2007, a fungus that morphologically resembled K. abietis was isolated from symptomatic needle samples from Nordmann fir from Austria, Denmark, Germany, Norway, and USA. Sequencing of the internal transcribed spacer (ITS) region of ribosomal DNA of these cultures, plus a K. abietis reference culture from Germany (CBS 248.93), resulted in Hormonema dematioides, the imperfect stage of Sydowia polyspora, and thus the taxonomy is further discussed. Inoculation tests on Nordmann fir seedlings and transplants with isolates of S. polyspora from all five countries resulted in the development of CSNN symptoms. In 2009, S. polyspora was also isolated from symptomatic needles from Nordmann fir collected in Slovakia. (c) 2010 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.