Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2017
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Authors
Jan Feranec Tomas Soukup Gregory Taff Premysl Stych Ivan BicíkAbstract
This chapter presents an analysis of land cover changes in Eastern Europe between 1990 and 2006, assessed using CORINE (Co-ORdination of INformation on the Environment) Land Cover (CLC) datasets. The plethora of potential land cover change categories were condensed into seven categories of major land use change processes: urbanization, agricultural intensification, agricultural extensification, afforestation, deforestation, construction and management of water bodies, and other changes. The amounts of each change category and their spatial distributions are summarized, and the change categories were also mapped to show the relative amounts of change (per 3 × 3 km2) between 1990 and 2000 and between 2000 and 2006. The results showed that while more afforestation than deforestation was observed in the first period, the reverse was true in the second period, when deforestation outpaced afforestation. Urbanization and suburbanization were major processes in Eastern Europe, particularly around existing major cities, and the speed of this process generally increased from the first to the second period. Both the intensification and extensification of agriculture were common during both periods, but a larger effect was observed in the first period. Overall, land use changes were highest in central Europe and the Baltic countries and lowest in southeast Europe.
Authors
Bjørn Kløve Hanne Margrethe Lund Kvitsand Maria J. Gunnarsdottir Sylvi Gaut Tarja Pitkänen Sigurdur Gardarsson P. Rossi Ilkka MiettinenAbstract
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Production of inoculum of Colletotrichum acutatum from both previously infected and overwintered tissue, as well as newly developed plant tissue of sour cherry (Prunus cerasus), was studied in southern Norway. Plant parts were sampled from commercial, private, or research orchards, and incubated for 2 to 14 days (time depended on tissue type) in saturated air at 20°C. In early spring, abundant sporulation was found on scales of overwintered buds and shoots. A mean of 35% infected buds in four cultivars was observed, with a maximum of 72% of the buds infected in one of the samples. Over 3 years, the seasonal production of overwintered fruit and peduncles of cv. Fanal infected the previous year was investigated. In all three years, the infected plant material was placed in the trees throughout the winter and the following growing season; in two of the years, fruit and peduncles were also placed on the ground in the autumn or the following spring. Old fruit and peduncles formed conidia throughout the season, with a peak in May and June. Spore numbers declined over the season, but the decline was more rapid for plant material on the ground than in the trees. On average over 2 years, 68.7, 24.0, or 7.3% of the inoculum came from fruit placed in the trees, placed on the ground in spring, or placed on the ground the preceding autumn, respectively. The number of fruit and peduncles attached to the trees in a planting of cv. Hardangerkirsebær was followed from February to July one year, and although there was a decline over time, fruit and/or their peduncles were still attached in substantial numbers in July, thus illustrating their potential as sources of inoculum. In observations over 2 years in a heavily infected orchard of cv. Stevnsbær, 75 and 47% of flowers and newly emerged fruit, respectively, were infected. Artificially inoculated flowers and fruit produced conidia until harvest, with a peak in mid-July. It may be concluded that previously infected and overwintered, as well as newly emerged tissue of sour cherry, may serve as sources of inoculum of C. acutatum throughout the growing season.
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Authors
Christer Magnusson Ricardo Holgado Keith Davies Deliang Peng Marte Persdatter Tangvik Ingunn BurudAbstract
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Authors
Sascha Köpke Jürgen Kasper Peter Flachenecker Helge Meissner A. Brandt Björn Hauptmann Gabriele Bender Imke Backhus A.C. Rahn J pöttgren Eik Vettorazzi C. HeesenAbstract
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The genus Pectobacterium, which belongs to the bacterial family Enterobacteriaceae, contains numerous species that cause soft rot diseases in a wide range of plants. The species Pectobacterium carotovorum is highly heterogeneous, indicating a need for re-evaluation and a better classification of the species. PacBio was used for sequencing of two soft-rot-causing bacterial strains (NIBIO1006T and NIBIO1392), initially identified as P. carotovorum strains by fatty acid analysis and sequencing of three housekeeping genes (dnaX, icdA and mdh). Their taxonomic relationship to other Pectobacterium species was determined and the distance from any described species within the genus Pectobacterium was less than 94% average nucleotide identity (ANI). Based on ANI, phylogenetic data and genome-to-genome distance, strains NIBIO1006T, NIBIO1392 and NCPPB3395 are suggested to represent a novel species of the genus Pectobacterium, for which the name Pectobacterium polaris sp. nov. is proposed. The type strain is NIBIO1006T (=DSM 105255T=NCPPB 4611T).