Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2020
Abstract
Understanding how populations are structured in space and time is a central question in evolutionary biology. Parasites and their hosts are assumed to evolve together, however, detailed understanding of mechanisms leading to genetic structuring of parasites and their hosts are lacking. As a parasite depends on its host, studying the genetic structure of both parasite and host can reveal important insights into these mechanisms. Here, genetic structure of the monogenean parasite Gyrodactylus thymalli and its host the European grayling (Thymallus thymallus) was investigated in 10 tributaries draining into the large Lake Mjøsa in Norway. The population genetic structure of spawning grayling was studied using microsatellite genotyping, while G. thymalli was studied by sequencing a mitochondrial DNA gene (dehydrogenase subunit 5). Two main genetic clusters were revealed in grayling, one cluster comprising grayling from the largest spawning population, while the remaining tributaries formed the second cluster. For both taxa, some genetic differentiation was observed among tributaries, but there was no clear isolation-by-distance signature. The structuring was stronger for the host than for the parasite. These results imply that moderate to high levels of gene flow occur among the sub-populations of both taxa. The high parasite exchange among tributaries could result from a lack of strong homing behavior in grayling as well as interactions among individual fish outside of the spawning season, leading to frequent mixing of both host and parasite.
Abstract
The necrotrophic fungal pathogen Parastagonospora nodorum causes Septoria nodorum blotch (SNB), which is one of the dominating leaf blotch diseases of wheat in Norway. A total of 165 P. nodorum isolates were collected from three wheat growing regions in Norway from 2015 to 2017. These isolates, as well as nine isolates from other countries, were analyzed for genetic variation using 20 simple sequence repeat (SSR) markers. Genetic analysis of the isolate collection indicated that the P. nodorum pathogen population infecting Norwegian spring and winter wheat underwent regular sexual reproduction and exhibited a high level of genetic diversity, with no genetic subdivisions between sampled locations, years or host cultivars. A high frequency of the presence of necrotrophic effector (NE) gene SnToxA was found in Norwegian P. nodorum isolates compared to other parts of Europe, and we hypothesize that the SnToxA gene is the major virulence factor among the three known P. nodorum NE genes (SnToxA, SnTox1, and SnTox3) in the Norwegian pathogen population. While the importance of SNB has declined in much of Europe, Norway has remained as a P. nodorum hotspot, likely due at least in part to local adaptation of the pathogen population to ToxA sensitive Norwegian spring wheat cultivars.
Authors
Cornelya KlutschAbstract
No abstract has been registered
Authors
Simo Maduna Adam Vivian-Smith Ólöf Dóra Bartels Jónsdóttir Albert Imsland Cornelya Klutsch Tommi Nyman Hans Geir Eiken Snorre HagenAbstract
The lumpfish Cyclopterus lumpus is commercially exploited in numerous areas of its range in the North Atlantic Ocean, and is important in salmonid aquaculture as a biological agent for controlling sea lice. Despite the economic importance, few genetic resources for downstream applications, such as linkage mapping, parentage analysis, marker-assisted selection (MAS), quantitative trait loci (QTL) analysis, and assessing adaptive genetic diversity are currently available for the species. Here, we identify both genome- and transcriptome-derived microsatellites loci from C. lumpus to facilitate such applications. Across 2,346 genomic contigs, we detected a total of 3,067 microsatellite loci, of which 723 were the most suitable ones for primer design. From 116,555 transcriptomic unigenes, we identified a total of 231,556 microsatellite loci, which may indicate a high coverage of the available STRs. Out of these, primer pairs could only be designed for 6,203 loci. Dinucleotide repeats accounted for 89 percent and 52 percent of the genome- and transcriptome-derived microsatellites, respectively. The genetic composition of the dominant repeat motif types showed differences from other investigated fish species. In the genome-derived microsatellites AC/GT (67.8 percent), followed by AG/CT (15.1 percent) and AT/AT (5.6 percent) were the major motifs. Transcriptome-derived microsatellites showed also most dominantly the AC/GT repeat motif (33 percent), followed by A/T (26.6 percent) and AG/CT (11 percent). Functional annotation of microsatellite-containing transcriptomic sequences showed that the majority of the expressed sequence tags encode proteins involved in cellular and metabolic processes, binding activity and catalytic reactions. Importantly, STRs linked to genes involved in immune system process, growth, locomotion and reproduction were discovered in the present study. The extensive genomic marker information reported here will facilitate molecular ecology studies, conservation initiatives and will benefit many aspects of the breeding programmes of C. lumpus.
Authors
Gillian Butler Carsten Malisch Elisabet Nadeau Anna Woodhouse Bjørn Egil Flø Tomasz Sakowski Flaviana Gottardo Giorgia Riuzzi Hannah Davis Håvard SteinshamnAbstract
No abstract has been registered
Authors
Gillian Butler Carsten Malisch Elisabet Nadeau Anna Woodhouse Bjørn Egil Flø Tomasz Sakowski Flaviana Gottardo Giorgia Riuzzi Hannah Davis Håvard SteinshamnAbstract
The SusCatt project investigates alternative systems to improve sustainability in European cattle production, taking different approaches in Norway, Sweden, Germany, Poland, UK and Italy – all making greater use of pasture and forage, reducing damaging or external inputs. Rather than us deciding on how we tell everybody about findings, one project task is to ask potential audiences about their sources of information – how they gain knowledge? Ideally, this will offer guidance on an effective dissemination strategy. Project messages are relevant to multiple sectors: farmers, extension workers, consumers and policy makers. Attempts were made to survey these multiple stakeholders. We collected 236 opinions and found considerable variation, not only between groups but also between the same sectors in different countries. The most popular and highest-ranking sources overall were traditional press formats of newspapers and magazines. On the other hand, accessing information from social media was very polarised; almost non-existent for German and Polish stakeholders but widely used by UK farmers (possibly skewed by the dominance of face-to-face rather than on-line data collection). Findings suggest that each message from research projects needs a customized approach in dissemination, depending on the target audience and their regular habits of sourcing information
Authors
Rein Drenkhan Beccy Ganley Jorge Martín-García Petr Vahalík Kalev Adamson Katarína Adamčíková Rodrigo Ahumada Lior Blank Helena Bragança Paolo Capretti Michelle Cleary Carolina Cornejo Kateryna Davydenko Julio J. Diez Hatice Tugba Doğmuş Lehtijärvi Miloň Dvořák Rasmus Enderle Gerda Fourie Margarita Georgieva Luisa Ghelardini Jarkko Hantula Renaud Ioos Eugenia Iturritxa Loukas Kanetis Natalia N. Karpun András Koltay Elena Landeras Svetlana Markovskaja Nebai Mesanza Ivan Milenković Dmitry L. Musolin Konstantinos Nikolaou Justyna A. Nowakowska Nikica Ogris Funda Oskay Tomasz Oszako Irena Papazova-Anakieva Marius Paraschiv Matias Pasquali Francesco Pecori Trond Rafoss Kristina Raitelaityte Rosa Raposo Cecile Robin Carlos A. Rodas Alberto Santini Antonio V. Sanz-Ros Andrey V. Selikhovkin Alejandro Solla Mirkka Soukainen Nikoleta Soulioti Emma T. Steenkamp Panaghiotis Tsopelas Aleksandar Vemic Anna Maria Vettraino Michael J. Wingfield Stephen Woodward Cristina Zamora-Ballesteros Martin S. MullettAbstract
Fusarium circinatum, the causal agent of pine pitch canker (PPC), is currently one of the most important threats of Pinus spp. globally. This pathogen is known in many pine-growing regions, including natural and planted forests, and can affect all life stages of trees, from emerging seedlings to mature trees. Despite the importance of PPC, the global distribution of F. circinatum is poorly documented, and this problem is also true of the hosts within countries that are affected. The aim of this study was to review the global distribution of F. circinatum, with a particular focus on Europe. We considered (1) the current and historical pathogen records, both positive and negative, based on confirmed reports from Europe and globally; (2) the genetic diversity and population structure of the pathogen; (3) the current distribution of PPC in Europe, comparing published models of predicted disease distribution; and (4) host susceptibility by reviewing literature and generating a comprehensive list of known hosts for the fungus. These data were collated from 41 countries and used to compile a specially constructed geo-database. A review of 6297 observation records showed that F. circinatum and the symptoms it causes on conifers occurred in 14 countries, including four in Europe, and is absent in 28 countries. Field observations and experimental data from 138 host species revealed 106 susceptible host species including 85 Pinus species, 6 non-pine tree species and 15 grass and herb species. Our data confirm that susceptibility to F. circinatum varies between different host species, tree ages and environmental characteristics. Knowledge on the geographic distribution, host range and the relative susceptibility of different hosts is essential for disease management, mitigation and containment strategies. The findings reported in this review will support countries that are currently free of F. circinatum in implementing effective procedures and restrictions and prevent further spread of the pathogen.
Authors
Auvikki de Boon Camilla Sandström Ugo Arbieu Inger Hansen Lisa Lehnen Agnese Marino Mari Pohja-Mykrä Camilla Risvoll Geir-Harald Strand Katrina RønningenAbstract
Policy mixes (i.e. the total structure of policy processes, strategies, and instruments) are complex constructs that can quickly become incoherent, inconsistent, and incomprehensive. This is amplified when the policy mix strives to meet multiple objectives simultaneously, such as in the case of large carnivore policy mixes. Building on Rogge and Reichardt's analytical framework for the analysis of policy mixes, we compare the policy mixes of Norway, Sweden, Finland, the Netherlands, Germany (specifically Saxony and Bavaria), and Spain (specifically Castilla y León). The study shows that the large carnivore policy mixes in the case countries show signs of lacking vertical and horizontal coherence in the design of policy processes, weak consistency between objectives and designated policy instruments, and, as a consequence, lacking comprehensiveness. We conclude that creating consistent, coherent, and comprehensive policy mixes that build on multiple objectives requires stepping away from sectorized policy development, toward a holistic, systemic approach, strong collaborative structures across policy boundaries and regions, the inclusion of diverse stakeholders, and constant care and attention to address all objectives simultaneously rather than in isolation.
Abstract
Diseases caused by viruses threaten the production industry and food safety of aquaculture which is a great animal protein source. Grass carp reovirus (GCRV) has caused tremendous loss, and the molecular function of viral proteins during infection needs further research, as for most aquatic viruses. In this study, interaction between GCRV major outer capsid protein VP4 and RIG-I, a critical viral RNA sensor, was screened out by GST pull-down, endogenous immunoprecipitation and subsequent LC-MS/MS, and then verified by co-IP and an advanced farred fluorescence complementation system. VP4 was proved to bind to the CARD and RD domains of RIG-I and promoted K48-linked ubiquitination of RIG-I to degrade RIG-I. VP4 reduced mRNA and promoter activities of key genes of RLR pathway and sequential IFN production. As a consequence, antiviral effectors were suppressed and GCRV replication increased, resulting in intensified cytopathic effect. Furthermore, results of transcriptome sequencing of VP4 stably expressed CIK (C. idella kidney) cells indicated that VP4 activated the MyD88-dependent TLR pathway. Knockdown of VP4 obtained opposite effects. These results collectively revealed that VP4 interacts with RIG-I to restrain interferon response and assist GCRV invasion. This study lays the foundation for anti-dsRNA virus molecular function research in teleost and provides a novel insight into the strategy of immune evasion for aquatic virus.
Abstract
No abstract has been registered