Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2010
Authors
Jens Rohloff Per Winge Jahn Davik May Bente Brurberg Keithanne Mockaitis Vladimir Shulaev Stephen K, Randall Atle M. Bones Muath AlsheikhAbstract
In order to support functional genomics research in octoploid (Fragaria x ananassa Duch.) and diploid (F. vesca) strawberry, a customized Fragaria microarray chip was developed as a joint collaboration between Graminor Breeding Ltd. and NTNU. F. vesca cDNA sequences were provided by The Center for Genomics and Bioinformatics, Indiana University (an assembly of >3 million reads from GS-FLX Titanium - Roche/454 Life Sciences sequencing), and about 59,000 publicly available Fragaria EST sequences were uploaded from NCBI. In addition, ~190 Mb of preliminary draft genome sequences from F. vesca were provided by the Strawberry Genome Sequencing Consortium (courtesy to V. Shulaev). cDNAs used as templates for probe design were validated by BlastN against the F. vesca draft genome excluding cDNAs of microbial origin. Genes not represented in the cDNA collection were identified by screening F. vesca draft genome against protein sequences from Arabidopsis thaliana, Vitis vinifera, Ricinus communis and Populus trichocarpa. Exon sequences from genes not found in the cDNAs were included. In total, 43723 unique 60-mer probes were designed and the Agilent eARRAY tool was used to produce a 4x44k format microarray chip. Fragaria chip applicability and feasibility for transcriptional profiling was investigated using either abiotic (low temperature) or biotic (pathogenic fungi) stress treatment. Microarray data will be subsequently integrated with other omics data to address gene-regulatory networks and biological functions. Cold acclimation experiments were focused on short- and long-term effects in meristematic tissue, and revealed the up-regulation of ~100 cold-responsive genes (transcription factors, dehydrins, enzymes), and transcripts involved in starch breakdown and raffinose biosynthesis. Beside central metabolism, secondary metabolism was also strongly modulated as seen by changes in the expression of flavonoid biosynthesis-related genes. Time-course studies of transcriptional responses in F. vesca accessions showing contrasting resistance toward the pathogen Phytophthora cactorum are in progress, and will be presented in-depth.
Abstract
Isolates of Colletotrichum sublineolum were collected from different sorghum-producing regions of Ethiopia and divided into five groups based on their geographic origin. The growth rate of 50 isolates showed considerable variation: 1·7?5·8 mm day?1, mean 3·3 mm day?1. However, the isolates displayed little variation in colony colour and colony margin, except for isolates from the north, which were different from the others. Amplified fragment length polymorphism analysis of 102 isolates revealed much greater variations among the different groups. Dice similarity coefficients ranged from 0·32 to 0·96 (mean 0·78). Cluster analysis and principal coordinate analysis revealed a differentiation of the isolates according to their geographic origin, and both methods clearly indicated a genetic separation between the southern, the eastern and the other isolates. Analysis of molecular variance (amova) indicated a high level of genetic variation both among (42%) and within (58%) the C. sublineolum sampling sites in Ethiopia. The amova also indicated a high level of genetic differentiation (FST = 0·42) and limited gene flow (Nm = 0·343). The results of this study confirmed the presence of a highly diverse pathogen, which is in agreement with the existence of diverse host genotypes and widely ranging environmental conditions in sorghum-producing regions of the country. Such diversity should be taken into account in future breeding programmes to achieve an effective and sustainable disease management strategy.
Abstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
Today the spruce bark beetle Ips typographus is always univoltine in Northern Europe including Norway and completes development from egg to adult between May and August. Further south in Europe, development is bivoltine with the completion of two generations in most years. A temperature-driven developmental model suggests that by 2070-2100 the voltinism of I. typographus will change dramatically in Norway. If summers become only 2.5°C warmer than today bivoltinism can be expected every single year in the major spruce growing areas in S-Norway. This is likely to have dramatic effects on forestry since two generations per year will give two, instead of one, attack periods each summer. In addition to increasing the number of attacked trees the effect of the attacks may also be more severe, as Norway spruce is more susceptible to beetle attacks later in the summer. However, climate change will probably also change the phenology of Norway spruce and thus its susceptibility to attack by I. typographus and its phytopathogenic fungal associates. We are currently modelling how tree resistance varies with temperature and tree phenology in order to provide more well-founded advice to forest managers on the interaction between bark beetles and tree in a future climate.
Abstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
We have recently found that Norway spruce (Picea abies (L.) Karst.) can rapidly adjust its adaptive performance, probably through an epigenetic mechanism. This appears to employ a kind of long-term memory of temperature sum and (probably) photoperiod from the time of its embryo development. In our research we made identical controlled crosses and produced seed lots under controlled temperature and day-length conditions and later observed phenology, growth and hardiness traits in the progenies. It was repeatedly found that temperature conditions during seed set, in particular, influence the phenotypes of the offspring; seedlings from seeds produced under warm conditions have later terminal bud set and reduced autumn frost hardiness than those from seed produced under colder conditions, and thus perform like a more southern provenance. When embryonic clones were derived from mature zygotic embryos and were cultured at different temperatures, the plants cultured under warm in vitro temperature were the last to set bud and grew taller than those cultured at lower temperatures. Progenies produced in Norway by Central European mother trees had a bud set curve skewed towards that of the local Norwegian performance. A comparison of the performance of seedlings from seeds collected in the same provenance regions in 1970 and 2006 shows that the more recent seed lots consistently produce taller seedlings with a later bud set, probably due to higher temperatures during seed production in 2006. The effect of reproductive environment has been shown to persist for years. It mimics the variation between provenances from different latitudes and altitudes and may explain much of the observed variability in bud set and early height growth between natural populations of Norway spruce. The observed phenomenon suggests an epigenetic mechanism in the developing embryo, either zygotic or somatic, that senses environmental signals such as temperature and influences adaptive traits. Research is underway to understand the molecular basis of this mechanism. We will discuss the implications of this epigenetic phenomenon for the interpretation of provenance differences, for tree breeding and for its possible role in adaptation to climate change.
Abstract
We monitored the effects of the drought stress on 20-year old clones of Norway spruce (Picea abies) by using a range of instrumental methods. On two experimental plots (Hoxmark, Norway, 59°40\"14`N, 10°47\"36`E) the drought was induced in a period between May and October 2009 by removing the throughfall using the rain shelters and trenching. We collected data on soil moisture, stem and branch sap flow, xylem diameter, anatomical and calorimetric analysis of the needles, fine root biomass and dynamics and resistance to pathogens. Standard meteorological data were collected locally throughout the whole period. Here we present the preliminary analysis of sap flow and xylem diameter in a period 1-17 august 2009. The sap flow was measured on stems in the breast height by using the method of stem tissue heat balance (THB, EMS Brno). The values were measured once in 2 minutes and saved as the average of 10 minutes. The fluctuations in xylem diameter was monitored by using the automatic dendrometers DR26 (EMS Brno). We evaluated both diurnal and seasonal dynamics. Preliminary results show a significant difference in shape of diurnal curves of transpiration as well as different time lag among the sap flow and the potential evapo-transpiration. Also the differences in diurnal dynamics of the stem circumference suggested different xylem water potential in stressed and control trees. In the drought-stressed trees the diurnal fluctuation in stem diameter was about 4 times higher and the total stem increment one third lower, com-pared to the control trees.