Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2019
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Simeon Rossmann Merete Wiken Dees Torfinn Torp Vinh Hong Le Monica Skogen Borghild Glorvigen Jan van der Wolf May Bente BrurbergAbstract
Potato soft rot Pectobacteriaceae (SRP) cause large yield losses and are persistent in seed lots once established. In Norway, different Pectobacterium species are the predominant cause of soft rot and blackleg disease. This work aimed to evaluate the potential of real-time PCR for quantification of SRP in seed tubers, as well as investigating the status of potato seed health with respect to SRP in Norway. A total of 34 seed potato lots, including certified seeds, was grown and monitored over three consecutive years. All seed lots contained a quantifiable amount of SRP after enrichment, with very few subsamples being free of the pathogens. A high SRP prevalence based on a qPCR assay, as well as a high symptom incidence in certified seeds were observed, suggesting that current criteria for seed certification are insufficient to determine tuber health and predict field outcomes. Pectobacterium atrosepticum was the most abundant species in the examined seed lots and present in all lots. Consistently good performance of first generation seed lots with respect to blackleg and soft rot incidence, as well as low quantity of SRP in these seed lots demonstrated the importance of clean seed potatoes. Weather conditions during the growing season seemed to govern disease incidence and SRP prevalence more than seed grade. The impact of temperature, potato cultivar and Pectobacterium species on tuber soft rot development were further examined in tuber infection experiments, which showed that temperature was the most important factor in nearly all cultivars. Large-scale quantification of latent infection and predictive models that include contributing factors like weather, infecting bacterial species and cultivar are needed to reduce soft rot and blackleg.
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Invasive alien species and new plant pests are introduced into new regions at an accelerating rate, due to increasing international trade with soil, plants and plant products. Exotic, plant pathogenic oomycetes in soil from the root zone of imported plants pose a great threat to endemic ecosystems and horticultural production. Detecting them via baiting and isolation, with subsequent identification of the isolated cultures by Sanger sequencing, is labour intensive and may introduce bias due to the selective baiting process. We used metabarcoding to detect and identify oomycetes present in soil samples from imported plants from six different countries. We compared metabarcoding directly from soil both before and after baiting to a traditional approach using Sanger-based barcoding of cultures after baiting. For this, we developed a standardized analysis workflow for Illumina paired-end oomycete ITS metabarcodes that is applicable to future surveillance efforts. In total, 73 soil samples from the rhizosphere of woody plants from 33 genera, in addition to three samples from transport debris, were analysed by metabarcoding the ITS1 region with primers optimized for oomycetes. We detected various Phytophthora and Pythium species, with Pythium spp. being highly abundant in all samples. We also found that the baiting procedure, which included submerging the soil samples in water, resulted in the enrichment of organisms other than oomycetes, compared to non-baited soil samples.
Authors
Hong Yang Lisa Paruch Xunji Chen Andre van Eerde Hanne Skomedal Yanliang Wang Di Liu Jihong Liu ClarkeAbstract
To meet increasing demand for animal protein, swine have been raised in large Chinese farms widely, using antibiotics as growth promoter. However, improper use of antibiotics has caused serious environmental and health risks, in particular Antimicrobial resistance (AMR). This paper reviews the consumption of antibiotics in swine production as well as AMR and the development of novel antibiotics or alternatives in China. The estimated application of antibiotics in animal production in China accounted for about 84240 tons in 2013. Overuse and abuse of antibiotics pose a great health risk to people through food-borne antibiotic residues and selection for antibiotic resistance. China unveiled a national plan to tackle antibiotic resistance in August 2016, but more support is needed for the development of new antibiotics or alternatives like plant extracts. Antibiotic resistance has been a major global challenge, so international collaboration between China and Europe is needed.
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Heidi Udnes Aamot Katherine Ann Gredvig Nielsen Shiori Koga Anne Kjersti Uhlen Ulrike Böcker Erik Lysøe Guro Brodal Ruth Dill-Macky Ingerd Skow HofgaardAbstract
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Authors
Roman Gebauer Daniel Volařík Josef Urban Isabella Børja Nina Elisabeth Nagy Toril Drabløs Eldhuset Paal KrokeneAbstract
Several studies have looked at how individual environmental factors influence needle morphology in conifer trees, but interacting effects between drought and canopy position have received little attention. In this study, we characterized morphological responses to experimentally induced drought stress in sun exposed and shaded current-year Norway spruce needles. In the drought plot trees were suffering mild drought stress, with an average soil water potential at 50 cm depth of -0.4 MPa. In general, morphological needle traits had greater values in sun needles in the upper canopy than in shaded needles in the lower canopy. Needle morphology 15 months after the onset of drought was determined by canopy position, as only sun needle morphology was affected by drought. Thus, canopy position was a stronger morphogenic factor determining needle structure than was water availability. The largest influence of mild drought was observed for needle length, projected needle area and total needle area, which all were reduced by ~27% relative to control trees. Needle thickness and needle width showed contrasting sensitivity to drought, as drought only affected needle thickness (10% reduction). Needle dry mass, leaf mass per area and needle density were not affected 15 months after the onset of mild drought. Our results highlight the importance of considering canopy position as well as water availability when comparing needle structure or function between conifer species. More knowledge about how different canopy parts of Norway spruce adapt to drought is important to understand forest productivity under changing environmental conditions.
Authors
Ingerd Skow Hofgaard Heidi Udnes Aamot Morten Lillemo Guro Brodal Erik Lysøe Marit Almvik Anne-Grete Roer Hjelkrem Mauritz Åssveen Aina Lundon Russenes Einar Strand Åsmund Bjørnstad Helge Skinnes Selamawit Tekle Espen Sannes Sørensen Trond Buraas Alf Ceplitis Birgitte Henriksen Bernd Rodemann Simon G. EdwardsAbstract
Occasionally, high mycotoxin levels are observed in Norwegian oat grain lots. The development of moderate resistant oat cultivars is therefore highly valued in order to increase the share of high quality grain into the food and feed industry. The Norwegian SafeOats project (2016-2020) aims to develop resistance screening methods to facilitate the phase-out of Fusarium-susceptible oat germplasm. Furthermore, SafeOats will give new insight into the biology of F. langsethiae and HT2+T2 accumulation in oats. The relative ranking of oat varieties according to F. graminearum/DON versus F. langsethiae/HT2+T2 content has been explored in naturally infested as well as in inoculated field trials. Routine testing of the resistance to F. graminearum in oat cultivars and breeding lines has been conducted in Norway since 2007. We are currently working on ways to scale up the inoculum production and fine tune the methodology of F. langsethiae inoculation of field trials to be routinely applied in breeding programs. Through greenhouse studies, we have analysed the content of Fusarium DNA and mycotoxins in grains of selected oat varieties inoculated at different development stages. Furthermore, we are studying the transcriptome during F. langsethiae and F. graminearum infestation of oats. The project also focus on the occurrence of F. langsethiae in oat seeds and possible influence of the fungus on seedling development in a selection of oat varieties. On average, the fungus was observed on 5% of the kernels in 168 seed lots tested during 2016-2018. No indication of transmission of F. langsethiae from germinating seed to seedlings was found in a study with germination of naturally infected seeds. So far, the studies have shown that the ranking of oat varieties according to HT2+T2 content in non-inoculated field trials resembles the ranking observed in inoculated field trials. The ranking of oat varieties according to DON content is similar in non-inoculated and F. graminearum inoculated field trials. However, the ranking of oat varieties according to DON content does not resemble the ranking for HT2+T2. The results from SafeOats will benefit consumers nationally and internationally by providing tools to increase the share of high quality grain into the food and feed industry. The project is financed by The Foundation for Research Levy on Agricultural Products/Agricultural Agreement Research Fund/Research Council of Norway with support from the industry partners Graminor, Lantmännen, Felleskjøpet Agri, Felleskjøpet Rogaland & Agder, Fiskå Mølle Moss, Norgesmøllene, Strand Unikorn/Norgesfôr and Kimen Seed Laboratory.