Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2009
Authors
Carl Gunnar Fossdal Igor A. Yakovlev Ari M. Hietala Halvor SolheimAbstract
To identify differentially expressed genes of the white-rot fungus Heterobasidion parviporum subtractive cDNA libraries were constructed using suppressive subtraction hybridization (SSH) technique with RNA extracted from an advanced stage of decay area and from colonization front next to the reaction zone of the stem of a mature Norway spruce trees. Besides cytochrome P450s and proteins with unknown function, the SSH libraries constructed contained genes involved in basic cellular processes, andcell wall degradation. To examine the role of selected candidate genes three trees, showing a variable degree of wood decay, were used for real-time RT-PCR profiling of candidate genes. In the decay transition areas the study revealed activity centers that showed remarkable similarity in the transcript profiles of monitored genes.
Authors
Nadeem Yaqoob Carl Gunnar Fossdal Jan Karlsson Benedicte Riber Albrectsen Halvor SolheimAbstract
Due to the great economic losses caused by the root and butt-rot pathogen Heterobasidion annosum, development of efficient control measures is warranted. H. annosum a necrotroph colonize the Norway spruce from inside and is responsible for 100s of millions of Euros losses annually. Considerable clonal variation has been recorded for Norway spruce in resistance towards H. annosum, but the defence mechanisms contributing to host resistance against both necrotrophic and biotrophic fungi remain poorly understood. The recent genome sequencing of Populus has made the genus a model to facilitate tree genetics. Genome-wide transcript profiling of Populus tremula upon pathogen attack will now be used, and homologues of Norway spruce genes to defence genes up-regulated in Populus will be identified. Two aspen clones (23 and 72) from the SwAsp collection (Luquez 2007) were used in the present study. Plants were propagated from tissue culture and kept in greenhouse under un-manipulated conditions. To study the host defence mechanisms, the rust (Melampsora magnusiana Wagner) and a bluestain fungus were used as a biotrophic and necrotrophic fungus respectively. Melampsora spores solution was applied to the underside of the leaf. To control for sectoriality six leaves were infected on each plant. To ensure high humidity and avoid cross contamination, plastic bags were wrapped around infected leaves. Leaves above infected leaves (10, 9, and 8) were harvested respectively 1, 3 and 14 days after inoculation. Initial results from microarray data indicate a clear separation between two Aspen clone (23 and 72) lines. For line 23 the response to biotroph and necrotroph seems to be similar. Whereas the response for line 72 is divergent for the treatments as they go in opposite direction. The controls show that there is an initial difference in the 2 lines (controls are separated). What are the genes that make biotrohic and necrotrophic treatment of 72 look so different will be worked out from microarray data. Differential expression of defense genes in biotrohic and necrotrophic treatment will be verified further with quantitative real time PCR. Chemical analysis of Aspen leaves gave less phenolic compounds as plants were kept in greenhouse. HPLC will be carried out after reaching some conclusion from microarray data analysis.
Authors
Åke Olson Mikael Brandström Kajsa Himmelstrand Mårten Lind Magnus Karlsson K. Lunden Kerstin Dalman Heriberto Vélëz Björn Canbäck Francis Martin Halvor Solheim Carl Gunnar Fossdal Pierre Rouzé Yao-Cheng Lin Matteo Garbelotto Ursula Kües Igor V. Grigoriev Andrea Aerts Erika Lindquist Jeremy Schmutz Jan StenlidAbstract
The genome sequence of the conifer rot root pathogen Heterobasidion annosum was generated at JGI with 8.23 X coverage. The nuclear genome assembles in 39 scaffolds of total 33.7 Mbp estimated to cover 98.1% of the complete genome. We predicted 12,270 genes with an average length of 1,617 bp and exon number and length of 5.54 and 250 bp respectively. About 50% (5999) of the predicted genes could be validated by EST support with the 40,807 EST´s generated with in the project. The genome has a GC content of 52.0% and very little repetitive sequences with 2,895 SSR per mega base. The physical genome is congruent with the genetic linkage map, and most of the linkage groups have been possible to anchor to the 18 largest scaffolds.
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Authors
Belachew Asalf Tadesse Håvard Eikemo Andrew Dobson Anne-Marte Tronsmo Cecilie Hagen David M. Gadoury Robert C Seem Arne StensvandAbstract
Several non-chemical control agents are now registered and available for control of powdery mildews. However, there is little or no information about their efficacy against strawberry powdery mildew, caused by Podosphera aphanis. Trials were conducted to compare the performance of non-chemical control agents to chemical fungicides under laboratory, greenhouse and high plastic tunnel conditions. The treatments included: AQ10 (active ingredient is Ampelomyces quisqualis, a hyperparasite on powdery mildew), AQ10 + Silwet Gold (organosilicon adjuvant, enhances distribution and wetting), Vacciplant (active ingredient is laminarin, an extract from brown algae), JMS Stylet oil (mineral oil), Rape seed oil + detergent, Thiovit (wettable sulphur), Topas 100 EC (penconazole) + Candit (kresoximmethyl) and water as control. In the greenhouse, one quarter of the recommended dose was used either daily in one experiment or three times per week in another. In the field, half of recommended rates were applied twice weekly. Both in the greenhouse and tunnel experiments, the chemical control Topas + Candit and AQ10 + Silwet Gold significantly reduced disease severity. AQ10,Vacciplant and Thiovit were moderately effective when applied daily in the greenhouse trial, but not significantly different from the water control when applied three time per week in the greenhouse and twice a week in the tunnel experiment. In the plastic tunnel, the JMS stylet oil and Rape seed oil + detergent treatments caused severe phytotoxic reaction (necrosis). AQ10 used alone had the poorest performance in the tunnel. This indicated that the spreader either enhances the effect of AQ10 and/or the spreader itself had an effect. In laboratory experiments with powdery mildew grown on strawberry leaflets in Petri dishes, spore germination after treatments with water, Stylet oil, Candit and Thiovit were 74, 53, 8 and 7%, respectively. The effect of Thiovit found in the laboratory was not reflected in the greenhouse and plastic tunnel trials. We will further explore the protectant, curative and eradicative effects of the compounds included here.
Authors
Holger Lange Nicholas Clarke O. Janne Kjønaas Wenche Aas Kjell Andreassen Isabella Børja Harald Bratli Susanne Eich-Greatorex Toril Drabløs Eldhuset Kjersti Holt Hansen Tonje Økland Ingvald Røsberg Trine Aulstad Sogn Volkmar TimmermannAbstract
No abstract has been registered
Abstract
The most important and widespread disease on golf courses is Microdochium nivale. It is a psycrotrophic fungal plant pathogen that is the main cause of biotic winter injury in grasses in the temperate and sub-arctic climates, both with and without snow cover. It is an opportunistic pathogen, with the ability to attack plants under a wide range of environmental conditions. A large variation in both host preference and aggressiveness among isolates has been documented. It is speculated that these traits as well as competition between isolates may be dependent on temperature. The fungus is spread by infected seeds and from infected plants or debris. Besides seed transmitted inoculum, it is not clear whether the primary inoculum source is wind dispersed ascospores or soilborne/plant debris borne inoculum. Wind borne ascospores has been claimed to be the main inoculum source, but perithecia are hardly observed on grasses on Norway. The aim of the present project was obtain better understanding of what is the source of primary inoculum for snow mould caused by M. nivale; to understand how inoculum of M. nivale survives from spring to fall, and from year to year, to understand how climatic conditions affects the potential inoculum by monitoring symptoms on plants, occurrence of the fungus and growth characteristics in vitro of strains sampled from snow melt and through summer and autumn. To obtain such knowledge, surveys and sampling on selected golf courses was conducted. Snow mould symptoms and the occurrence of M. nivale in leaves and stems of grasses sampled from golf greens and foregreens was reduced during the growth season. We also found that M. nivale could be isolated from locations without visible symptoms. Despite a lower isolation rate in autumn, M. nivale was again isolated in some of the originally locations, the following spring. The M. nivale isolation rate was similar from sites located on greens compared to foregreens, and from greens located at more sunny sites compared to more shadowy located greens. We conclude that this fungus seem to survive from year to year within the same locations on greens and foregreens.
Authors
Belachew Asalf Tadesse Arne Stensvand David M. Gadoury Robert C Seem Andrew Dobson Anne-Marte TronsmoAbstract
No abstract has been registered