Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2011
Abstract – Crop losses at the farm level: A multidimensional approach
Andrea Ficke, David M. Gadoury
Abstract
No abstract has been registered
Abstract
Twenty cypress accessions were tested for freezing tolerance. After freezing to −15°C, differences among cypress accessions were tested by measuring electrolyte leakage and chlorophyll fluorescence. Based on these data, cypress accessions showing contrasting freezing tolerance were subjected to transcript profiling of candidate genes upon the development of cold hardening, with the ultimate goal of providing a scientific basis for selecting/breeding cypress genotypes with higher tolerance to low temperature. Nine different cypress genes were selected: a heat shock protein, a putative chaperonin, a chlorophyll-binding protein, a serine/threonine protein kinase, a putative exonuclease, a dehydrin, and three senescenceassociated proteins. Transcript levels of these genes were profiled during cold hardening under controlled conditions using real-time reverse-transcription-polymerase chain reaction. While the genes showed regulation patterns common to both cypress accessions, in the case of chaperonin, exonuclease, and some senescence-associated proteins, clonal differences in gene regulation were found. The potential relationship of these differences with cold tolerance is discussed.
Abstract
Fungal hyphae in soil, although crucial in the C-dynamics, are difficult to quantify. Here we present a simple method for fungal biomass assessment and possibility for up-scaling. Originally we used root nets to quantify fine roots in drought-stressed Picea abies stand as described by Lukac and Godbold (2010).Root nets (7 cm wide, mesh size 1 mm) were inserted vertically to 20 cm depth, twice during the course of one year. When root nets were extracted from the soil, large amounts of hyphae were growing on and through the nets in the control plot, whereas little or no hyphae were growing in nets from the drought-stressed plot.This observation led us to consider root nets as a promising tool to quantify hyphae as well. The inert net material together with its regular geometric pattern is well suited for obtaining fungal biomass estimates and provide a material for further molecular analysis of fungal species. We will describe a proposal how to scan the hyphae, calculate the biomass and upscale to the soil volume unit.
Abstract
The osmotic method has been used for many years in Norway and Sweden as a routine method for detection of Pyrenophora teres (anamorph Drechslera teres) and P. graminea (anamorph D. graminea) on barley. The method is based on the ability of Pyrenophora spp. to produce red pigments. However, it cannot distinguish between P. teres and P. graminea because they produce the same pigment. A validation study has been carried out with the aim to provide the necessary documentation for including the method in the International Rules for Seed Testing (ISTA Rules). Seven laboratories participated and each tested 3 x 300 seeds of three barley seed lots. Analyses of the results demonstrate that the method gives sufficient repeatability and there is no particular problem with this test at a laboratory level. Furthermore, in previous studies with the osmotic method organized by a Nordic working group, it has been shown that the osmotic method easily gives reproducible results for Pyrenophora teres/P. graminea in barley when used by experienced laboratories. Moreover, the osmotic method is well suited for routine analyses because it is quick and easy to carry out. The study showed, that if used correctly and with proper equipment the osmotic method for detection of Pyrenophora teres/P. graminea is easy to perform and it showed good conformity amongst laboratories.
Abstract
The occurence of Armillaria species was assessed in Norway, enabling the northern-most distribution of this genus to be determined in Europe. Four Armillaria species were found in Norway. Armillaria borealis was the most common species occurring on woody vegetation to the permafrost zone (ca. 69°N). Armillaria cepistipes was present in southern and central Norway, but was not found further than 66°N. Armillaria solidipes and Armillaria gallica were rare, found at only one locality each; 59°40′ and 59°32′, respectively. Armillaria species were found on 14 hosts, but there was no significant difference between occurrence of A. borealis and A. cepistipes on declining and dead trees. Phylogenetic analyses separated each species into separate clades. All isolates of A. borealis, except one, and most isolates of A. solidipes were in separate clades. However, a subclade within the A. borealis clade was formed of two A. ostoyae and one A. borealis isolates. Two small A. cepistipes genets were found in a declining oak stand.
Abstract
During a survey conducted in August 2009 in northern Norway, symptoms typical for red band needle blight (1) were observed in four young Scots pine (Pinus sylvestris) stands. The stands, less than 15 years old, were located in humid sites near rivers in Bardu and Målselv municipalities, Troms County. Many of the oldest needles (2- to 3- years-old) in the lower part of young trees were partially or completely brown, but still attached, and red bands could be observed. Aggregations of conidial stromata were often seen in the red bands. Conidia were hyaline, smooth, thin walled, and filiform, 1.9 to 2.6 μm wide and 12 to 36 μm long....
Authors
Igor A. Yakovlev Ari M. Hietala Pierre-Emmanuel Courty Taina Lundell Jan Stenlid Halvor Solheim Carl Gunnar FossdalAbstract
In forest soils, saprotrophic, necrotrophic and ectomycorrhizal fungi are involved in carbon cycling. Heterobasidion annosum, white rot necrotrophic fungi, is known to decompose wood lignocellulose by secreting a broad range of oxidative enzymes. The genome H. annosum s.l. was sequenced by JGI to a 8.23X coverage and assembled into 39 scaffolds with a total size of 33.7 Mb covering more than 98% of the whole genome. Based on the genome sequence we have characterized gene families coding for enzymes known to participate in conversion of wood lignin: multicopper oxidases (MCOs, 18 genes) as laccases (Lcc), class II peroxidases (8 genes) as manganese peroxidases (MnP), glyoxal oxidases (5 genes, GLOX), quinone-reducing oxidoreductases (19 genes, QOR) and GMC oxidoreductases (12 genes) as aryl alcohol oxidases (AAO). We studied the genomic organisation and phylogeny of these genes as well as their expression using qRT-PCR. Comparative and phylogenetic analyses of genes coding for enzymes involved in wood lignin conversion and decomposition (i.e. lignin-modifying class II peroxidases) reveal differences between white- and brown-rot, necrotrophic and saprotrophic wood-decaying basidiomycetes. Transcript profiling using qRT-PCR revealed that some transcripts were very abundant in lignin-rich media, in cellulose-rich media, in wood or in the free-living mycelium grown liquid culture, suggesting specific functions of these genes, which need to be studied further.
Abstract
Introduction: Windstorm is one of the most destructive environmental disturbance factors on forests, but its influence on conifer defense chemistry and susceptibility to insects and diseases is not well understood. Materials and methods: We selected groups of 10 Norway spruce trees with short leaders, leaning stems, or no apparent damage 17 months after the largest storm ever recorded in Sweden. Trees were mass-inoculated with Ceratocystis polonica, a virulent blue stain fungus associated with the spruce bark beetle (Ips typographus) to estimate tree resistance. Terpene and phenolic composition in the bark was analyzed by gas chromatography–mass spectrometry, two-dimensional gas chromatography, and liquid chromatography. Results: In contrast to our hypothesis, the results showed that trees with no apparent damage were more susceptible to C. polonica inoculation than short-leader and leaningstem trees. Chemical composition also differed between trees in different damage classes. (+)-3-carene and two unidentified stilbenes were higher, and taxifolin glycoside was lower in trees without apparent damage than in the others. The relative amount of (−)-α-pinene was negatively correlated, whereas (+)-3-carene, sabinene, (−)-germacrene D, thunbergol and two unidentified stilbenes were positively correlated with fungal performance. Conclusions: These results suggested that wind damage had increased resistance level of short-leader and leaning trees to C. polonica inoculation, and that change in terpene and phenolic composition in the bark could be at least partly responsible for the induced resistance. Different possible explanations for this unexpected finding are discussed.
Abstract
No abstract has been registered
Authors
Arne StensvandAbstract
The following diseases of roots, stem or shoots of apple are more or less troublesome, but they all seem to be easily spread by planting material. Twig blight and canker caused by Diplodia sp. and Phomopsis sp. are new to Norway, but are thus far not widely distributed. Apple proliferation is widely distributed in the fruit growing areas, while fire blight has not been observed in the fruit areas, although it is widely spread along the western coast of the country. European canker, silver leaf and crown- and collar rot are endemic in the country.