Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Ana-Maria Madalina Pantazica Andre van Eerde Mihaela-Olivia Dobrica Iuliana Caras Irina Ionescu Adriana Costache Catalin Tucureanu Hege Særvold Steen Catalin Lazar Inger Heldal Sissel Haugslien Adrian Onu Crina Stavaru Norica Branza-Nichita Jihong Liu ClarkeAbstract
The recent SARS-CoV-2 pandemic has taught the world a costly lesson about the devastating consequences of viral disease outbreaks but also, the remarkable impact of vaccination in limiting life and economic losses. Vaccination against human Hepatitis B Virus (HBV), a major human pathogen affecting 290 million people worldwide, remains a key action towards viral hepatitis elimination by 2030. To meet this goal, the development of improved HBV antigens is critical to overcome non-responsiveness to standard vaccines based on the yeast-produced, small (S) envelope protein. We have recently shown that combining relevant immunogenic determinants of S and large (L) HBV proteins in chimeric antigens markedly enhances the anti-HBV immune response. However, the demand for cost-efficient, high-quality antigens remains challenging. This issue could be addressed by using plants as versatile and rapidly scalable protein production platforms. Moreover, the recent generation of plants lacking β-1,2-xylosyltransferase and α-1,3-fucosyltransferase activities (FX-KO), by CRISPR/Cas9 genome editing, enables production of proteins with “humanized” N-glycosylation. In this study, we investigated the impact of plant N-glycosylation on the immunogenic properties of a chimeric HBV S/L vaccine candidate produced in wild-type and FX-KO Nicotiana benthamiana. Prevention of β-1,2-xylose and α-1,3-fucose attachment to the HBV antigen significantly increased the immune response in mice, as compared with the wild-type plant-produced counterpart. Notably, the antibodies triggered by the FX-KO-made antigen neutralized more efficiently both wild-type HBV and a clinically relevant vaccine escape mutant. Our study validates in premiere the glyco-engineered Nicotiana benthamiana as a substantially improved host for plant production of glycoprotein vaccines.
Abstract
No abstract has been registered
Authors
Ruben Erik Roos Johan Asplund Tone Birkemoe Aud Helen Halbritter Rechsteiner Siri Lie Olsen Linn Vassvik Kristel van Zuijlen Kari KlanderudAbstract
No abstract has been registered
Abstract
No abstract has been registered
Authors
Daniel Beat Müller Miguel Las Heras Hernandez Avijit Vinayak Pandit Anne Falk Øgaard Kjell Inge ReitanAbstract
Phosphorus is a building block for all life and therefore plays an essential role in food production. Currently, large amounts of phosphorus enter the Norwegian food system from abroad in the form of mineral fertilizer, feedstuff, food, as well as micro-ingredients for animal feed, mainly in salmon farming. However, only a small fraction of this phosphorus ends up as food for humans, while the largest part accumulates in soil and water systems. This inefficiency entails two challenges: 1. Phosphorus supply is critical. Phosphate rock, the primary source of phosphorus for fertilizer and micro-ingredient production, is a limited resource that is highly concentrated in a few countries. Over 80% of global phosphate rock reserves are found in only 5 countries, and ~70% are located in Morocco and Morocco-occupied Western Sahara. The high concentration renders many countries vulnerable to geopolitical and economic instabilities and threatens food safety. The EU has therefore included phosphate rock on its list of Critical Raw Materials. 2. The accumulation of phosphorus in water systems can lead to eutrophication and dead zones, threatening fish stocks and other aquatic life. The high phosphorus concentration in soils due to overfertilization over long periods of time increases the danger of losses to water systems by runoff, further exacerbating the eutrophication risk. A more circular use of phosphorus could simultaneously reduce supply and pollution risks. This is particularly relevant in Norway, where the government has an ambition to increase salmon and trout production from currently 1,5 to 5 million tons by 2050. Achieving a circular phosphorus economy is a complex task: (i) The land- and the sea-based food systems are increasingly interlinked, for example through agricultural production of fish feed or the application of fish sludge on agricultural land. (ii) The Norwegian phosphorus cycle is increasingly interlinked with that of other countries as trade flows along the entire food supply chain are growing. (iii) Phosphorus fertilizers, both primary and recycled, are often contaminated with heavy metals such as cadmium, uranium, and zinc, which tend to accumulate in soils. Cleaning the phosphorus cycle is therefore vital for soil fertility and human health. This report is based on the MIND-P project, which studied the Norwegian phosphorus cycle for both agriculture and aquaculture at a farm-by-farm basis and explored options for increasing circularity. The project identified farm-level and structural barriers to managing phosphorus resources more effectively. We propose four fundamental strategies to overcome these barriers: 1. Develop and maintain a national nutrient accounting. 2. Minimize phosphorus losses and accumulations at farm level. 3. Establish infrastructures for capturing, processing, trade, and use of manure and fish sludge to produce high-quality recycled fertilizers that are tailored to the needs of the users in Norway and abroad. 4. Adopt a regulatory framework to promote a market for recycled fertilizer. The strategies proposed here were developed with the support of an Advisory Panel consisting of representatives from government, industry, industry associations, and NGOs in an online and two physical workshops conducted in 2022.
Authors
Sandra Rojas-Botero Simon Dietzel Johannes Kollmann Leonardo H. TeixeiraAbstract
Urbanization causes ecosystem degradation and losses of biodiversity. Still, urban landscapes favor organisms, depending on how well they fit the anthropogenic conditions. Creating urban green spaces of high ecological quality, such as pollinator-friendly road verges, promotes biodiversity in cities. We sowed a seed mixture consisting of 26 native plant species with diverse functional traits in 46 road verge patches along four urban roads in Munich (South Germany) in 2019/20 and monitored in 2020/21. Control were pre-existing turfgrass patches with conventional management. We assessed species richness, Shannon diversity, and Pielou's evenness, whereas functional composition was evaluated via functional richness, evenness, and divergence, based on 13 plant traits. To study urbanization effects on species and functional composition, we analyzed soil characteristics and tree shading at the local level, as well as distance to city center, imperviousness, and edge density at the landscape level. We used linear models and ordination analysis to assess treatment, local and landscape effects, and the influence of planting year on taxonomic and functional composition. Rehabilitation treatment explained most differences in species and functional composition. Species richness was lower in the city center and at sites with high soil organic matter; Pielou's evenness increased with soil pH. Trait composition differed between rehabilitated and control patches, and varied according to planting year. Soil bulk density negatively affected functional richness for all traits combined, and edge density reduced functional evenness of establishment traits. We conclude that urban filtering, in combination with planting year, shapes species and trait composition of rehabilitated road verges. Hence, local and landscape-level trait–environment interactions affect the assembly of road verge grasslands. Finally, our findings suggest that establishment traits have a pivotal role in the development of rehabilitated road verges, while the predictability of rehabilitation outcomes may be hindered even when seeding specifically designed seed mixtures.
Authors
Binbin Xiang Torben Peters Theodora Kontogianni Frawa Vetterli Stefano Puliti Rasmus Astrup Konrad SchindlerAbstract
Panoptic segmentation is the combination of semantic and instance segmentation: assign the points in a 3D point cloud to semantic categories and partition them into distinct object instances. It has many obvious applications for outdoor scene understanding, from city mapping to forest management. Existing methods struggle to segment nearby instances of the same semantic category, like adjacent pieces of street furniture or neighbouring trees, which limits their usability for inventory- or management-type applications that rely on object instances. This study explores the steps of the panoptic segmentation pipeline concerned with clustering points into object instances, with the goal to alleviate that bottleneck. We find that a carefully designed clustering strategy, which leverages multiple types of learned point embeddings, significantly improves instance segmentation. Experiments on the NPM3D urban mobile mapping dataset and the FOR-instance forest dataset demonstrate the effectiveness and versatility of the proposed strategy.
Authors
Albert Kjartan Dagbjartarson Imsland Patrick Reynolds Lauri Teemu Kapari Simo Maduna Snorre Hagen Anna Hanssen Ólöf Dóra Bartels JónsdóttirAbstract
The aim of this study was to evaluate whether sea lice grazing efficiency, behaviour, size variation and cataract development can be improved through selective breeding of lumpfish. A series of studies was conducted over a four-year period where distinctive lumpfish families were established initially from wild caught mature fish and latterly from established breeding lines. Four subsequent trials (called: Phase I-IV) with ten families of lumpfish (N = 480) with a mean (± SD) weight of 46.4 ± 9.4 g (Phase I), 54.8 ± 9.2 g (Phase II), 42.0 ± 7.4 g (Phase III) and 31.3 ± 2.4 g (Phase IV) were distributed among ten sea cages (5 × 5 × 5 m) during autumn 2018 to spring 2022, each stocked with 400–404 Atlantic salmon with an average initial mean (± SD) of 387 ± 9 g (Phase I), 621 ± 15 g (Phase II), 280 ± 16 g (Phase III) and 480 ± 66 g (Phase IV). All the ten cages were stocked with 48 lumpfish (12% stocking density). In all phases there was a large inter-family variation of lice grazing of lumpfish of both L. salmonis and C. elongatus. When sea lice grazing was scaled in relation to sea lice infestation numbers on the salmon the highest sea lice grazing activity was found in Phase IV and in particular in families sired from farmed parents. There was a general trend for mean start weights and standard deviations to decrease as the phases continued. A significant increase was found in frequency of behaviour associated with feeding on natural food sources and grazing sea lice from salmon during each subsequent phase. The increase in incidence of cataracts from start to end of each trial phase was significantly reduced from Phase I (16%) to Phase IV (2%). Overall, present findings showed that sea lice grazing of both L. salmonis and C. elongatus, size variation, cataract prevalence and behaviour types can be enhanced through selection and targeted breeding programs.
Authors
Jian Liu Faruk Djodjic Barbro Ulen Helena Aronsson Robert Barneveld Marianne Bechmann Lars Bergström Tore Krogstad Sigrun Hjalmarsdottir Kværnø Katarina Kyllmar Anne Falk Øgaard Lillian Øygarden Eva SkarbøvikAbstract
No abstract has been registered
Authors
Vicente Guallart Michael Salka Daniel Ibañez Fabio Salbitano Silvano Fares Arne Sæbø Stefano Boeri Livia Shamir Lucrezia De Marco Sofia Paoli Maria Chiara Pastore Jerylee Wilkes-Allemann Evelyn Coleman Brantschen Ivana ŽivojinovićAbstract
This introductory chapter will evaluate how we have reached the current point in the history of world urbanity, its relationship with nature, and why a fusion between the two is now necessary. In order to define BioCities as cities which follow the principles of natural ecosystems to promote life, we will refer to the extensive knowledge of the history of urban science, the need for cities to be reinvented based on ecological principles, and new methods of analysing and measuring reality through digital systems. This vision of the main functions and traits of BioCities will also serve as a thread and reference for the subsequent chapters which will highlight and elaborate on the different properties of the BioCity vision. The final chapter will draw from this vision the constituting principles of the BioCity and will outline possible pathways of transition towards BioCities.