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Publications

NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.

2019

Abstract

New projects in England and Norway addresses threats to traditional collaborative management by using a collaborative and multi-partner approach to improving the goods and services from commons. These goods and services include water quality and flood protection, biodiversity, cultural landscape, access, carbon storage and archaeology. The projects will increase understanding of the heritage of commons and their role in ecosystems service provision between visitors, local communities, policy makers and farmers. Overall the aim is to seek ways that improve the dialogue with and support the contribution of commoners and commons to the delivery of public goods and services. A key aim is to address the lack of understanding of commoning and commons amongst decision makers and other organisations who influence the management of the land. A pilot project in England produced a set of ‘attributes of successful management for multiple outcomes’ and these are central to the "Our Common Cause" project, which started in England in 2017. The co-production approach will be outlined regarding the best practice in the commoning community. Given the limited opportunities to build capacity and increase capability it is essential to promote and examine good case studies to ensure that knowledge and skills exchange is viable. The trans-regional approach is essential due to the fragmented nature of commons across England and justified by the themes that arose from the regions in the pilot. The richness of experience across the country will benefit commons, commoning communities and the range of organisations (public and private) that engage with them. The FUTGRAZE project in Norway seeks to tackle the issue of 'how do formal and informal institutions concerning common grazing adapt to environmental, political and economic change over time how do these changes influence different users cooperative strategies? It examine: - current arrangements for governance, management and operation in Norwegian grazing areas; - how grazing and cooperation are affected by change in land use pressure and structural changes causing reduced number of pasture farmers in some areas and asymmetry in herd sizes in other; - how grazing areas that are organized differently solve different challenges. The paper consider three broad areas. 1. The most fundamental threat is that the role of commoners and commons is neither understood nor valued; 2. The increasing number of external pressures on commoners threatens to undermine the systems and cultural landscapes of commons; 3. The decline in commoning threatens the heritage of commons and the public goods and services they It also diminishes the resilience of commons in the face of external pressures.

Abstract

The objective of this study was to assess the use of unmanned aerial vehicle (UAV) data for modelling tree density and canopy height in young boreal forests stands. The use of UAV data for such tasks can be beneficial thanks to the high resolution and reduction of the time spent in the field. This study included 29 forest stands, within which 580 clustered plots were measured in the field. An area-based approach was adopted to which random forest models were fitted using the plot data and the corresponding UAV data and then applied and validated at plot and stand level. The results were compared to those of models based on airborne laser scanning (ALS) data and those from a traditional field-assessment. The models based on UAV data showed the smallest stand-level RMSE values for mean height (0.56 m) and tree density (1175 trees ha−1 ). The RMSE of the tree density using UAV data was 50% smaller than what was obtained using ALS data (2355 trees ha−1 ). Overall, this study highlighted that the use of UAVs for the inventory of forest stands under regeneration can be beneficial both because of the high accuracy of the derived data analytics and the time saving compared to traditional field assessments.

To document

Abstract

Compared to angiosperms, gymnosperms lag behind in the availability of assembled and annotated genomes. Most genomic analyses in gymnosperms, especially conifer tree species, rely on the use of de novo assembled transcriptomes. However, the level of allelic redundancy and transcript fragmentation in these assembled transcriptomes, and their effect on downstream applications have not been fully investigated. Here, we assessed three assembly strategies for short-reads data, including the utility of haploid megagametophyte tissue during de novo assembly as single-allele guides, for six individuals and five different tissues in Pinus sylvestris. We then contrasted haploid and diploid tissue genotype calls obtained from the assembled transcriptomes to evaluate the extent of paralog mapping. The use of the haploid tissue during assembly increased its completeness without reducing the number of assembled transcripts. Our results suggest that current strategies that rely on available genomic resources as guidance to minimize allelic redundancy are less effective than the application of strategies that cluster redundant assembled transcripts. The strategy yielding the lowest levels of allelic redundancy among the assembled transcriptomes assessed here was the generation of SuperTranscripts with Lace followed by CD-HIT clustering. However, we still observed some levels of heterozygosity (multiple gene fragments per transcript reflecting allelic redundancy) in this assembled transcriptome on the haploid tissue, indicating that further filtering is required before using these assemblies for downstream applications. We discuss the influence of allelic redundancy when these reference transcriptomes are used to select regions for probe design of exome capture baits and for estimation of population genetic diversity.

To document See dataset

Abstract

There is a large potential in Europe for valorization in the vegetable food supply chain. For example, there is occasionally overproduction of tomatoes for fresh consumption, and a fraction of the production is unsuited for fresh consumption sale (unacceptable color, shape, maturity, lesions, etc.). In countries where the facilities and infrastructure for tomato processing is lacking, these tomatoes are normally destroyed, used as landfilling or animal feed, and represent an economic loss for producers and negative environmental impact. Likewise, there is also a potential in the tomato processing industry to valorize side streams and reduce waste. The present paper provides an overview of tomato production in Europe and the strategies employed for processing and valorization of tomato side streams and waste fractions. Special emphasis is put on the four tomato-producing countries Norway, Belgium, Poland, and Turkey. These countries are very different regards for example their climatic preconditions for tomato production and volumes produced, and represent the extremes among European tomato producing countries. Postharvest treatments and applications for optimized harvest time and improved storage for premium raw material quality are discussed, as well as novel, sustainable processing technologies for minimum waste and side stream valorization. Preservation and enrichment of lycopene, the primary health promoting agent and sales argument, is reviewed in detail. The European volume of tomato postharvest wastage is estimated at >3 million metric tons per year. Together, the optimization of harvesting time and preprocessing storage conditions and sustainable food processing technologies, coupled with stabilization and valorization of processing by-products and side streams, can significantly contribute to the valorization of this underutilized biomass.