Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2019
Forfattere
Anja Karine Ruud Jon Arne Dieseth Andrea Ficke Eiko Furuki Huyen T. T. Phan Richard P. Oliver Kar-Chun Tan Morten LillemoSammendrag
No abstract has been registered
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Jan Magnusson Stephanie Eisner Shaochun Huang Cristian Lussana Giulia Mazzotti Richard Essery Tuomo Saloranta Stein BeldringSammendrag
No abstract has been registered
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Dario Isidro Ojeda Alayon Tiina M. Mattila Tom Ruttink Sonja T. Kujala Katri Kärkkäinen Jukka-Pekka Verta Tanja PyhäjärviSammendrag
Compared to angiosperms, gymnosperms lag behind in the availability of assembled and annotated genomes. Most genomic analyses in gymnosperms, especially conifer tree species, rely on the use of de novo assembled transcriptomes. However, the level of allelic redundancy and transcript fragmentation in these assembled transcriptomes, and their effect on downstream applications have not been fully investigated. Here, we assessed three assembly strategies for short-reads data, including the utility of haploid megagametophyte tissue during de novo assembly as single-allele guides, for six individuals and five different tissues in Pinus sylvestris. We then contrasted haploid and diploid tissue genotype calls obtained from the assembled transcriptomes to evaluate the extent of paralog mapping. The use of the haploid tissue during assembly increased its completeness without reducing the number of assembled transcripts. Our results suggest that current strategies that rely on available genomic resources as guidance to minimize allelic redundancy are less effective than the application of strategies that cluster redundant assembled transcripts. The strategy yielding the lowest levels of allelic redundancy among the assembled transcriptomes assessed here was the generation of SuperTranscripts with Lace followed by CD-HIT clustering. However, we still observed some levels of heterozygosity (multiple gene fragments per transcript reflecting allelic redundancy) in this assembled transcriptome on the haploid tissue, indicating that further filtering is required before using these assemblies for downstream applications. We discuss the influence of allelic redundancy when these reference transcriptomes are used to select regions for probe design of exome capture baits and for estimation of population genetic diversity.
Forfattere
Atle Wehn HegnesSammendrag
Purpose An important requirement when producers apply for protected designation of origin (PDO) or protected geographical indications (PGIs) is to adapt and agree on a concise definition of the geographical boundaries and area of the product. Whereas PDO products must be both strongly ecologically and culturally embedded in the specific area, PGI products are allowed a weaker degree of embeddedness. The research question of this paper is: How are geographical boundaries becoming PDOs and PGIs? The paper aims to discuss these issues. Design/methodology/approach The analysis is based on diverse forms of empirical material. Document studies of laws, policy documents, etc. have been analyzed to uncover what kind of measures and concepts that have been important for implementation of the scheme in Norway. Interviews with producer organizations have involved the persons responsible for working out product regulations in producer organizations. Interviews have also been conducted with key informants representing public administrative bodies administering the regulation. All interviews have been semi-structured. Findings The analysis identifies a set of important conditions for the boundary work of PDO-PGI in Norway. The conditions can generally be said to be characterized by a weak understanding of the food-people-places nexus and a strong reliance on instrumentalised system logic in how to deal with the map-nature dimension in boundary work. The short answer to the research question is that geographical boundaries are becoming PDO and PGI through controversies. Originality/value The controversies are characterized by what is defined as cultural adaptation work. The actors overall adaptation work is understood as the sum of the practices that takes place in the interplay between people’s translations of language and knowledge, reorganization of social relationships and transformation of materiality. The interplay is embedded in the tension between the global and the local, the old and the new and results in both intended and unintended consequences.
Sammendrag
No abstract has been registered
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Habtamu AlemSammendrag
No abstract has been registered
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No abstract has been registered
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Karin Westlund Petrus Jönsson Dag Fjeld Peter Rauch Christoph KoglerSammendrag
Seasonal variations in wood supply are linked to the regional operating environment. This study constitutes the Norwegian contribution to Era-Net MultiStrat (Multimodal strategies for more resilient wood supply) covering oceanic, sub-arctic and continental climate zones. The oceanic zone is characterized by considerable seasonal variation in both temperature and precipitation. The goal of the study was to seek solutions for more resilient wood supply under these conditions. The study started with a general mapping of wood supply management processes including common demand and supply risks (WP1). The work continued with analysis of three years of production and transport reports (2014-2016) with tracking of roadside stocks and transport lead times (WP2). Daily temperature, precipitation, and snowpack were tracked with data from 65 surrounding weather stations. A simple multimodal transport problem with a rolling selection of planning horizons was then used to find the efficient multimodal solutions for the core, adjacent and peripheral supply regions through 12 balance periods per year (WP3). The transport analysis covers 65 supply districts feeding 6 assortment groups to 10 mills via 11 shipping terminals. The transport analysis varied both vessel cargo capacity and cargo collection practices. The results demonstrated a wide range of solutions to ensure roundwood availability with limited increases in system costs. While the transport analysis demonstrated the contribution of the multimodal solutions to structural flexibility, it also revealed a bottleneck for resilience of the wood supply system; seasonal variation in truck transport output (m3km/week). The geographical distribution of seasonality showed the main source to be one particular supply region. A subsequent wood supply planning workshop with production managers indicated that a bottleneck for improved production planning was short wood purchase and planning horizons. A simple optimization experiment was therefore set up to quantify the feasibility of more specific site-type selection according to actual soil and seasonal weather conditions for the selected region. On-line grid-based groundwater modeling was used to monitor weekly geographical variations in bearing capacity and the experiment provided a plausible re-scheduling of flows to reduce variation in delivery volumes and transport output.
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Milica Fotiric Akšic Dragana Dabic Zagorac Milica Sredojevic Jasminka Milivojevic Uros Gasic Mekjell Meland Maja NaticSammendrag
No abstract has been registered
Sammendrag
No abstract has been registered