Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2022
Abstract
In total, 154 wild raspberry samples were collected from 26 localities representing a large area in Norway (21 localities) and a narrowly defined region of the Giant Mountains in the northern parts of the Czech Republic (5 localities). The samples were characterized for genetic diversity and population differentiation as well as for their potential use in crop breeding. Choice of plant material was based on the biogeographical similarity between the Giant Mountains and relevant areas in Norway, where plant communities may have evolved in parallel since the ice ages. The overall level of genetic diversity ĥ = 0.786, I = 2.153 was high. Numerous rare alleles were found for raspberries originating especially from the East Giant Mountains populations Jeleni louky and Krakonosuv lom. The overall degree of population subdivision measured by Wright’s fixation index (FST) was of a moderate level of 0.28. The highest level 0.33 was found between populations in Northern Norway and 0.31 between populations in the Giant Mountains. The genetic structure was evaluated using Bayesian analyses as implemented using STRUCTURE software. According to the ΔK value, eight clusters (K8) were identified among all the analysed samples. The results of the analysis of molecular variance (AMOVA) indicated that 79.7% of the total variation could be attributed to differences among individuals within populations, 15.3% was credited to differences among populations within regions, and only 5.0% was attributed to differences among regions. We concluded based on the results that Czech and Norwegian raspberry (R. idaeus) populations growing in natural high altitude and northern ecosystems are important genetic resources and represent a valuable source of genes and unique allele compositions for in situ and ex situ conservation and future raspberry breeding programmes.
Authors
Cornelya Klutsch Simo Maduna Natalia Polikarpova Kristin Forfang Benedicte Beddari Karl Øystein Gjelland Paul Eric Aspholm Per-Arne Amundsen Snorre HagenAbstract
No abstract has been registered
Authors
Mekjell Meland Milica Fotiric Aksic Oddmund Frøynes Almira Konjic Lejla Lasic Naris Pojskic Fuad GasiAbstract
In order to best conserve, as well as utilize, traditional apple germplasm in Norway, an apple heritage cultivar collection was established in Ullensvang, western Norway, which aims to become the National Clonal Germplasm Repository. The establishment of the apple heritage cultivar collection was preceded by a molecular study that aimed to genotype a large number of apple accessions maintained in various ex situ sites in western and south-eastern Norway, using a rather small set of eight SSR markers. However limited, the marker set managed to identify synonyms, homonyms, and duplicates within and among the investigated collections. In this study, 171 apple accessions from the Ullensvang apple heritage cultivar collection were genotyped using a set of 20 different SSR markers. Approximately half of the accessions have been previously genotyped using eight SSR markers, enabling an assessment of whether the use of a larger marker set would yield a more accurate characterization. Based on the obtained molecular data, the apple heritage cultivar collection was determined to hold a key part of the overall genetic diversity of the Norwegian apple germplasm. Furthermore, the twelve additional SSR markers were able to differentiate several accessions groups originally thought to be synonyms, as well as to provide a more detailed insight into the genetic structure of this germplasm.
Authors
Simo MadunaAbstract
Continued anthropogenic environmental change is wreaking havoc on natural populations, with the stresses and pulses of induced ecological processes affecting a species' local habitat, resulting in inadvertent distribution shifts, hybridization events, and eventual biodiversity loss. It is more critical than ever to monitor the unintended consequences of human activity on not only natural populations, but also community structures and ecosystems. DNA-based (genetic and genomic) monitoring is a critical component of biodiversity monitoring because it allows for the tracking and quantification of temporal changes in population genetic metrics or other population data. Genetic/genomic monitoring enables the estimation of a variety of biological parameters, including demographic parameters (abundance, occupancy, hybridization, and disease status), population genetic parameters (genetic diversity, structure, and effective population size), and responses to anthropogenic selective pressures (exploitation, biological invasions, and climate change). This keynote address will highlight the practical implications of integrating genetic data into management, conservation objectives, and policymaking, as well as capacity building through international partnerships, using case studies from the Norwegian Barents Region.
Authors
Rodney N. Nagoshi Georg Goergen Djima Koffi Komi Agboka Anani Kossi Mawuko Adjevi Hannalene Du Plessis Johnnie Van den Berg Ghislain T. Tepa-Yotto Jeannette K. Winsou Robert L. Meagher Thierry BrévaultAbstract
The fall armyworm, Spodoptera frugiperda (J.E. Smith) is native to the Americas and a major pest of corn and several other crops of economic importance. The species has characteristics that make it of particular concern as an invasive pest, including broad host range, long-distance migration behavior, and a propensity for field-evolved pesticide resistance. The discovery of fall armyworm in western Africa in 2016 was followed by what was apparently a remarkably rapid spread throughout sub-Saharan Africa by 2018, causing economic damage estimated in the tens of billions USD and threatening the food security of the continent. Understanding the history of the fall armyworm invasion of Africa and the genetic composition of the African populations is critical to assessing the risk posed to different crop types, the development of effective mitigation strategies, and to make Africa less vulnerable to future invasions of migratory moth pests. This paper tested and expanded on previous studies by combining data from 22 sub-Saharan nations during the period from 2016 to 2019. The results support initial descriptions of the fall armyworm invasion, including the near absence of the strain that prefers rice, millet, and pasture grasses, while providing additional evidence that the magnitude and extent of FAW natural migration on the continent is more limited than expected. The results also show that a second entry of fall armyworm likely occurred in western Africa from a source different than that of the original introduction. These findings indicate that western Africa continues to be at high risk of future introductions of FAW, which could complicate mitigation efforts.
Authors
Katja Karppinen Charlotte Bour Muhammad Furqan Ashraf Hilary Edema Amos Samkumar Rajan Premkumar Teemu H. Teeri Kirsten Krause Laura JaakolaAbstract
No abstract has been registered
Abstract
Septoria nodorum blotch (SNB), caused by the necrotrophic fungal pathogen Parastagonospora nodorum, is the dominant leaf blotch pathogen of wheat in Norway. Resistance/susceptibility to SNB is a quantitatively inherited trait, which can be partly explained by the interactions between wheat sensitivity loci (Snn) and corresponding P. nodorum necrotrophic effectors (NEs). Two Nordic wheat association mapping panels were assessed for SNB resistance in the field over three to four years: a spring wheat and a winter wheat panel (n = 296 and 102, respectively). Genome-wide association studies found consistent SNB resistance associated with quantitative trait loci (QTL) on eleven wheat chromosomes, and ten of those QTL were common in the spring and winter wheat panels. One robust QTL on the short arm of chromosome 2A, QSnb.nmbu-2AS, was significantly detected in both the winter and spring wheat panels. For winter wheat, using the four years of SNB field severity data in combination with five years of historical data, the effect of QSnb.nmbu-2AS was confirmed in seven of the nine years, while for spring wheat, the effect was confirmed for all tested years including the historical data from 2014 to 2015. However, lines containing the resistant haplotype are rare in both Nordic spring (4.0%) and winter wheat cultivars (15.7%), indicating the potential of integrating this QTL in SNB resistance breeding programs. In addition, clear and significant additive effects were observed by stacking resistant alleles of the detected QTL, suggesting that marker-assisted selection can greatly facilitate SNB resistance breeding.
Authors
Junbin ZhaoAbstract
No abstract has been registered
Abstract
Global land use change has resulted in more pasture and cropland, largely at the expense of woodlands, over the last 300 years. How this change affects soil hydraulic function with regard to feedbacks to the hydrological cycle is unclear for earth system modelling (ESM). Pedotransfer functions (PTFs) used to predict soil hydraulic conductivity (K) take no account of land use. Here, we synthesize >800 measurements from around the globe from sites that measured near-saturated soil hydraulic conductivity, or infiltration, at the soil surface, on the same soil type at each location, but with differing land use, woodland (W), grassland (G) and cropland (C). We found that texture based PTFs predict K reasonably well for cropland giving unbiased results, but increasingly underestimate K in grassland and woodland. In native woodland and grassland differences in K can usually be accounted for by differences in bulk density. However, heavy grazing K responses can be much lower indicating compaction likely reduces connectivity. We show that the K response ratios (RR) between land uses vary with cropland (C/W = 0.45 [W/C = 2.2]) and grassland (G/W = 0.63 [W/G = 1.6]) having about half the K of woodland.