Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2024
Abstract
Here, we present, for the first time, the Ion TorrentⓇ next-generation sequencing (NGS) data for five houndsharks (Chondrichthyes: Triakidae), which include Galeorhinus galeus (number of bases pairs (bp) 17,487; GenBank accession number ON652874), Mustelus asterias (16,708; ON652873), Mustelus mosis (16,755; ON075077), Mustelus palumbes (16,708; ON075076), and Triakis megalopterus (16,746; ON075075). All assembled mitogenomes encode 13 protein-coding genes (PCGs), two ribosomal (r)RNA genes, and 22 transfer (t)RNA genes (tRNALeu and tRNASer are duplicated), except for G. galeus which contains 23 tRNA genes where tRNAThr is duplicated. The data presented in this paper can assist other researchers in further elucidating the diversification of triakid species and the phylogenetic relationships within Carcharhiniformes (groundsharks) as mitogenomes accumulate in public repositories.
Abstract
River Otter (Lontra canadensis) was extirpated from Prince Edward Island (PEI) in the early 1900s as a result of habitat loss and overexploitation. Although there were isolated and sporadic occurrences in PEI coastal and inland waters pre-1975, only anecdotal reports of tracks or sightings of the species had been documented in the 21st century, until an adult male otter was captured in a beaver trap in 2016. Since then, seven additional individuals have been collected opportunistically or as by-catch of beaver trapping, including an adult female and a kit (juvenile). Camera traps have also revealed what appears to be a family group in central PEI. A growing body of evidence strongly suggests a resident River Otter population on PEI. The island is separated from the mainland by the Northumberland Strait, which has a minimum width of 13 km of salt water. River Otters have naturally recolonized PEI by dispersing across the Northumberland Strait.
Abstract
No abstract has been registered
Authors
Angelina Lo Giudice Maria Papale Carmen Rizzo Stefania Giannarelli Gabriella Caruso Paul Eric Aspholm Giovanna Maimone Maurizio AzzaroAbstract
This explorative study was aimed at first characterizing the sponge Spongilla lacustris (Linnaeus, 1759) from the sub-Arctic Pasvik River (Northern Fennoscandia), in terms of associated microbial communities and pollutant accumulation. Persistent organic pollutants were determined in sponge mesohyl tissues, along with the estimation of the microbial enzymatic activity rates, prokaryotic abundance and morphometric traits, and the analysis of the taxonomic bacterial diversity by next-generation sequencing techniques. The main bacterial groups associated with S. lacustris were Alphaproteobacteria and Gammaproteobacteria, followed by Chloroflexi and Acidobacteria. The structure of the S. lacustris-associated bacterial communities was in sharp contrast to those of the bacterioplankton, being statistically close to those found in sediments. Dieldrin was measured at higher concentrations in the sponge tissues (3.1 ± 0.4 ng/g) compared to sediment of the same site (0.04 ± 0.03 ng/g). Some taxonomic groups were possibly related to the occurrence of certain contaminants, as was the case of Patescibacteria and dieldrin. Obtained results substantially contribute to the still scarce knowledge of bacterial community diversity, activities, and ecology in freshwater sponges. Practitioner Points * Microbial community associated with Spongilla lacustris is probably shaped by the occurrence of certain contaminants, mainly dieldrin and heavy metals. * A higher accumulation of dieldrin in the sponge mesohyl tissues than in sediment was determined. * S. lacustris is suggested as sponge species to be used as a sentinel of pesticide pollution in the Pasvik River. * S. lacustris, living in tight contact with soft substrates, harbored communities more similar to sediment than water communities.
Abstract
Old plant communities are of utmost importance for nature conservation, carbon sequestration, as well as gene pool maintenance. Shrub populations occurring in extreme environments beyond abiotic tree-lines provide diverse ecosystem services and have potential as proxy archives because they often inhabit areas with scarce and short instrumental records. We provide dendrochronological insight into one such population made up of prostrate Juniperus communis shrubs in the northern Scandinavian tundra (Norway), growing on a competition-free boulder field. We dated and provided a growth chronology of the oldest living shrub population (190 ± 148 years) from Scandinavia with the oldest individual being 683 years old. This is a conservative estimate, as shrubs in extreme environments do not form even a single row of cells in some years. The cross-dating issues of poorly growing shrubs do not fully allow to rely on climate sensitivity of the juniper population studied, although the species' potential for dendroclimatological reconstructions is generally considered high, also because the common juniper is an abundant woody species distributed globally. Old populations present an important gene source in plant recruitment, particularly in the context of the present environmental change.
Authors
Junbin Zhao Mikhail Mastepanov Carla Stadler Cornelya Klutsch Erling Fjelldal David Kniha Runar KjærAbstract
No abstract has been registered
Abstract
Background The order Lepidoptera has an abundance of species, including both agriculturally beneficial and detrimental insects. Molecular data has been used to investigate the phylogenetic relationships of major subdivisions in Lepidoptera, which has enhanced our understanding of the evolutionary relationships at the family and superfamily levels. However, the phylogenetic placement of many superfamilies and/or families in this order is still unknown. In this study, we determine the systematic status of the family Argyresthiidae within Lepidoptera and explore its phylogenetic affinities and implications for the evolution of the order. We describe the first mitochondrial (mt) genome from a member of Argyresthiidae, the apple fruit moth Argyresthia conjugella. The insect is an important pest on apples in Fennoscandia, as it switches hosts when the main host fails to produce crops. Results The mt genome of A. conjugella contains 16,044 bp and encodes all 37 genes commonly found in insect mt genomes, including 13 protein-coding genes (PCGs), two ribosomal RNAs, 22 transfer RNAs, and a large control region (1101 bp). The nucleotide composition was extremely AT-rich (82%). All detected PCGs (13) began with an ATN codon and terminated with a TAA stop codon, except the start codon in cox1 is ATT. All 22 tRNAs had cloverleaf secondary structures, except trnS1, where one of the dihydrouridine (DHU) arms is missing, reflecting potential differences in gene expression. When compared to the mt genomes of 507 other Lepidoptera representing 18 superfamilies and 42 families, phylogenomic analyses found that A. conjugella had the closest relationship with the Plutellidae family (Yponomeutoidea-super family). We also detected a sister relationship between Yponomeutoidea and the superfamily Tineidae. Conclusions Our results underline the potential importance of mt genomes in comparative genomic analyses of Lepidoptera species and provide valuable evolutionary insight across the tree of Lepidoptera species. Keywords Argyresthia conjugella, Illumina HiSeq, Lepidoptera, Mitochondrial genome, Yponomeutoidea
Authors
Galina Gusarova Hedvig Elisabeth Mjøen Magali Corti Frédéric Mahé Pernille Meyer Lilja Steinthorsdottir Marie Kristine Føreid Merkel Stefaniya Kamenova Kamenova Gabriela Wagner Monica Alterskjær Sundset Lars Folkow Tove Hilde Ågnes Utsi Tommi Nyman Cornelya Klutsch Torkild Tveraa Anne Krag Brysting Sylvain Monteux Youri Lammers Eric Coissac Pierre Robert Michel Taberlet Roberto Cazzolla Gatti Inger Greve AlsosAbstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
No abstract has been registered